Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC28AQ8IWP9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC28AQ8IWP9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC28AQ8IWP9 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC28AQ8IWP9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC28AQ8IWP9 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC28AQ8IWP9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28AQ8IWP9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CCDC28AQ8IWP9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28AQ8IWP9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28AQ8IWP9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28AQ8IWP9 BX255925.1-201ENST00000566954 1854 ntBASIC20.91■□□□□ 0.94
CCDC28AQ8IWP9 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28AQ8IWP9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28AQ8IWP9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC28AQ8IWP9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC28AQ8IWP9 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CCDC28AQ8IWP9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28AQ8IWP9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28AQ8IWP9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC28AQ8IWP9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28AQ8IWP9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28AQ8IWP9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28AQ8IWP9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28AQ8IWP9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28AQ8IWP9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CCDC28AQ8IWP9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28AQ8IWP9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28AQ8IWP9 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CCDC28AQ8IWP9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28AQ8IWP9 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28AQ8IWP9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC28AQ8IWP9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC28AQ8IWP9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC28AQ8IWP9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC28AQ8IWP9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC28AQ8IWP9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC28AQ8IWP9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC28AQ8IWP9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 AC145676.1-201ENST00000514988 2004 ntBASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC28AQ8IWP9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC28AQ8IWP9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28AQ8IWP9 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28AQ8IWP9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC28AQ8IWP9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28AQ8IWP9 AC068473.5-201ENST00000616428 2072 ntBASIC20.79■□□□□ 0.92
CCDC28AQ8IWP9 ZNRF2P1-201ENST00000441407 443 ntBASIC20.79■□□□□ 0.92
CCDC28AQ8IWP9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28AQ8IWP9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC28AQ8IWP9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28AQ8IWP9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28AQ8IWP9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28AQ8IWP9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28AQ8IWP9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28AQ8IWP9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28AQ8IWP9 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28AQ8IWP9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.91
CCDC28AQ8IWP9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC28AQ8IWP9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC28AQ8IWP9 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC28AQ8IWP9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC28AQ8IWP9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28AQ8IWP9 AL024507.2-201ENST00000606070 2574 ntBASIC20.75■□□□□ 0.91
CCDC28AQ8IWP9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC28AQ8IWP9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28AQ8IWP9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28AQ8IWP9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28AQ8IWP9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28AQ8IWP9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28AQ8IWP9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28AQ8IWP9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC28AQ8IWP9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28AQ8IWP9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28AQ8IWP9 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28AQ8IWP9 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28AQ8IWP9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28AQ8IWP9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28AQ8IWP9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28AQ8IWP9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28AQ8IWP9 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28AQ8IWP9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms