Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF43Q68DV7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.27■■□□□ 1.8
RNF43Q68DV7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.27■■□□□ 1.8
RNF43Q68DV7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RNF43Q68DV7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF43Q68DV7 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF43Q68DV7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.26■■□□□ 1.79
RNF43Q68DV7 ABHD17AP5-201ENST00000580133 923 ntBASIC26.26■■□□□ 1.79
RNF43Q68DV7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RNF43Q68DV7 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.26■■□□□ 1.79
RNF43Q68DV7 AC110285.7-201ENST00000624417 1536 ntBASIC26.25■■□□□ 1.79
RNF43Q68DV7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.25■■□□□ 1.79
RNF43Q68DV7 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF43Q68DV7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF43Q68DV7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.24■■□□□ 1.79
RNF43Q68DV7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF43Q68DV7 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF43Q68DV7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF43Q68DV7 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC26.23■■□□□ 1.79
RNF43Q68DV7 AC008813.1-201ENST00000536597 885 ntBASIC26.23■■□□□ 1.79
RNF43Q68DV7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.23■■□□□ 1.79
RNF43Q68DV7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF43Q68DV7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.22■■□□□ 1.79
RNF43Q68DV7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF43Q68DV7 AL139393.2-201ENST00000608721 2025 ntBASIC26.22■■□□□ 1.79
RNF43Q68DV7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF43Q68DV7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF43Q68DV7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
RNF43Q68DV7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.21■■□□□ 1.79
RNF43Q68DV7 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.21■■□□□ 1.79
RNF43Q68DV7 AL121749.1-202ENST00000609313 2153 ntBASIC26.21■■□□□ 1.79
RNF43Q68DV7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF43Q68DV7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RNF43Q68DV7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.2■■□□□ 1.79
RNF43Q68DV7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
RNF43Q68DV7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.2■■□□□ 1.78
RNF43Q68DV7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RNF43Q68DV7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.19■■□□□ 1.78
RNF43Q68DV7 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.18■■□□□ 1.78
RNF43Q68DV7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RNF43Q68DV7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RNF43Q68DV7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RNF43Q68DV7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.18■■□□□ 1.78
RNF43Q68DV7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
RNF43Q68DV7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
RNF43Q68DV7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.18■■□□□ 1.78
RNF43Q68DV7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
RNF43Q68DV7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RNF43Q68DV7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RNF43Q68DV7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
RNF43Q68DV7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RNF43Q68DV7 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.16■■□□□ 1.78
RNF43Q68DV7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RNF43Q68DV7 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
RNF43Q68DV7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
RNF43Q68DV7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RNF43Q68DV7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.15■■□□□ 1.78
RNF43Q68DV7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RNF43Q68DV7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RNF43Q68DV7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
RNF43Q68DV7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RNF43Q68DV7 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RNF43Q68DV7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.14■■□□□ 1.78
RNF43Q68DV7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
RNF43Q68DV7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RNF43Q68DV7 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.14■■□□□ 1.78
RNF43Q68DV7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.13■■□□□ 1.77
RNF43Q68DV7 AC148477.6-201ENST00000623746 465 ntBASIC26.13■■□□□ 1.77
RNF43Q68DV7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
RNF43Q68DV7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RNF43Q68DV7 GPX1-201ENST00000419349 1106 ntBASIC26.12■■□□□ 1.77
RNF43Q68DV7 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.12■■□□□ 1.77
RNF43Q68DV7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
RNF43Q68DV7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
RNF43Q68DV7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
RNF43Q68DV7 AC100797.4-201ENST00000631653 1827 ntBASIC26.11■■□□□ 1.77
RNF43Q68DV7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
RNF43Q68DV7 AC135731.1-201ENST00000569415 2548 ntBASIC26.11■■□□□ 1.77
RNF43Q68DV7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
RNF43Q68DV7 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.11■■□□□ 1.77
RNF43Q68DV7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.11■■□□□ 1.77
RNF43Q68DV7 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
RNF43Q68DV7 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.1■■□□□ 1.77
RNF43Q68DV7 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
RNF43Q68DV7 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
RNF43Q68DV7 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
RNF43Q68DV7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
RNF43Q68DV7 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.08■■□□□ 1.77
RNF43Q68DV7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.08■■□□□ 1.77
RNF43Q68DV7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
RNF43Q68DV7 DRD5P2-201ENST00000421395 2012 ntBASIC26.07■■□□□ 1.76
RNF43Q68DV7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms