Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DRD5P2-201ENST00000421395 2012 ntBASIC23.4■■□□□ 1.34
RNF4P78317 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
RNF4P78317 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
RNF4P78317 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
RNF4P78317 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
RNF4P78317 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.39■■□□□ 1.33
RNF4P78317 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
RNF4P78317 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RNF4P78317 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.39■■□□□ 1.33
RNF4P78317 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.39■■□□□ 1.33
RNF4P78317 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RNF4P78317 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RNF4P78317 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
RNF4P78317 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RNF4P78317 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
RNF4P78317 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RNF4P78317 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
RNF4P78317 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
RNF4P78317 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RNF4P78317 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
RNF4P78317 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RNF4P78317 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RNF4P78317 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.36■■□□□ 1.33
RNF4P78317 MIR219A2-201ENST00000608502 1504 ntBASIC23.36■■□□□ 1.33
RNF4P78317 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RNF4P78317 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
RNF4P78317 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RNF4P78317 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RNF4P78317 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RNF4P78317 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.34■■□□□ 1.33
RNF4P78317 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
RNF4P78317 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
RNF4P78317 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
RNF4P78317 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RNF4P78317 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RNF4P78317 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.33■■□□□ 1.33
RNF4P78317 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.33■■□□□ 1.33
RNF4P78317 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
RNF4P78317 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF4P78317 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.32■■□□□ 1.32
RNF4P78317 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.32■■□□□ 1.32
RNF4P78317 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF4P78317 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RNF4P78317 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.31■■□□□ 1.32
RNF4P78317 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.31■■□□□ 1.32
RNF4P78317 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RNF4P78317 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RNF4P78317 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.31■■□□□ 1.32
RNF4P78317 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
RNF4P78317 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RNF4P78317 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.3■■□□□ 1.32
RNF4P78317 AC018358.1-201ENST00000631079 1402 ntBASIC23.3■■□□□ 1.32
RNF4P78317 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RNF4P78317 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RNF4P78317 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RNF4P78317 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.29■■□□□ 1.32
RNF4P78317 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
RNF4P78317 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.28■■□□□ 1.32
RNF4P78317 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.28■■□□□ 1.32
RNF4P78317 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RNF4P78317 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF4P78317 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RNF4P78317 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF4P78317 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF4P78317 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF4P78317 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
RNF4P78317 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF4P78317 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
RNF4P78317 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF4P78317 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.26■■□□□ 1.31
RNF4P78317 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RNF4P78317 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF4P78317 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RNF4P78317 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RNF4P78317 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF4P78317 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF4P78317 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
RNF4P78317 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RNF4P78317 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
RNF4P78317 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.23■■□□□ 1.31
RNF4P78317 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF4P78317 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RNF4P78317 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF4P78317 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
RNF4P78317 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF4P78317 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF4P78317 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
RNF4P78317 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF4P78317 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF4P78317 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF4P78317 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF4P78317 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF4P78317 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.21■■□□□ 1.31
RNF4P78317 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF4P78317 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
RNF4P78317 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
RNF4P78317 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF4P78317 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF4P78317 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF4P78317 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms