Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC35.72■■■■□ 3.31
MSH6P52701 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC35.72■■■■□ 3.31
MSH6P52701 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
MSH6P52701 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC35.71■■■■□ 3.31
MSH6P52701 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
MSH6P52701 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
MSH6P52701 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
MSH6P52701 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC35.7■■■■□ 3.31
MSH6P52701 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
MSH6P52701 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
MSH6P52701 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC35.69■■■■□ 3.3
MSH6P52701 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
MSH6P52701 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC35.68■■■■□ 3.3
MSH6P52701 THA1P-201ENST00000590384 1145 ntBASIC35.68■■■■□ 3.3
MSH6P52701 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC35.68■■■■□ 3.3
MSH6P52701 KRT8P33-201ENST00000508125 1423 ntBASIC35.68■■■■□ 3.3
MSH6P52701 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
MSH6P52701 HES6-204ENST00000409182 863 ntTSL 2 BASIC35.67■■■■□ 3.3
MSH6P52701 AC010980.1-201ENST00000587192 1142 ntBASIC35.67■■■■□ 3.3
MSH6P52701 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
MSH6P52701 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC35.66■■■■□ 3.3
MSH6P52701 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC35.66■■■■□ 3.3
MSH6P52701 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC35.66■■■■□ 3.3
MSH6P52701 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC35.66■■■■□ 3.3
MSH6P52701 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
MSH6P52701 DUX4L9-201ENST00000449051 1259 ntBASIC35.65■■■■□ 3.3
MSH6P52701 RP9P-202ENST00000450133 1212 ntBASIC35.65■■■■□ 3.3
MSH6P52701 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC35.64■■■■□ 3.3
MSH6P52701 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC35.63■■■■□ 3.29
MSH6P52701 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
MSH6P52701 GUSBP5-201ENST00000418136 578 ntBASIC35.63■■■■□ 3.29
MSH6P52701 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC35.63■■■■□ 3.29
MSH6P52701 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC35.62■■■■□ 3.29
MSH6P52701 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC35.62■■■■□ 3.29
MSH6P52701 BHLHE23-202ENST00000612929 1109 ntBASIC35.62■■■■□ 3.29
MSH6P52701 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
MSH6P52701 AC026202.3-201ENST00000600805 1127 ntBASIC35.61■■■■□ 3.29
MSH6P52701 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC35.61■■■■□ 3.29
MSH6P52701 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC35.6■■■■□ 3.29
MSH6P52701 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC35.6■■■■□ 3.29
MSH6P52701 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
MSH6P52701 AC074183.2-201ENST00000623112 922 ntBASIC35.6■■■■□ 3.29
MSH6P52701 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
MSH6P52701 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
MSH6P52701 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC35.58■■■■□ 3.29
MSH6P52701 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC35.58■■■■□ 3.29
MSH6P52701 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
MSH6P52701 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
MSH6P52701 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC35.57■■■■□ 3.28
MSH6P52701 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
MSH6P52701 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC35.57■■■■□ 3.28
MSH6P52701 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
MSH6P52701 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
MSH6P52701 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC35.56■■■■□ 3.28
MSH6P52701 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC35.55■■■■□ 3.28
MSH6P52701 SMPD5-203ENST00000639008 1464 ntBASIC35.55■■■■□ 3.28
MSH6P52701 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
MSH6P52701 OR2A1-AS1-204ENST00000470435 602 ntBASIC35.54■■■■□ 3.28
MSH6P52701 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC35.54■■■■□ 3.28
MSH6P52701 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
MSH6P52701 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
MSH6P52701 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
MSH6P52701 BEX3-202ENST00000372634 753 ntTSL 2 BASIC35.53■■■■□ 3.28
MSH6P52701 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC35.53■■■■□ 3.28
MSH6P52701 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC35.53■■■■□ 3.28
MSH6P52701 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
MSH6P52701 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC35.52■■■■□ 3.28
MSH6P52701 MIR935-201ENST00000401179 91 ntBASIC35.52■■■■□ 3.28
MSH6P52701 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC35.52■■■■□ 3.28
MSH6P52701 YBX1P4-201ENST00000392794 808 ntBASIC35.51■■■■□ 3.28
MSH6P52701 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
MSH6P52701 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.27
MSH6P52701 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
MSH6P52701 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC35.5■■■■□ 3.27
MSH6P52701 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC35.5■■■■□ 3.27
MSH6P52701 AC103834.1-201ENST00000520383 144 ntBASIC35.5■■■■□ 3.27
MSH6P52701 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC35.49■■■■□ 3.27
MSH6P52701 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC35.49■■■■□ 3.27
MSH6P52701 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC35.49■■■■□ 3.27
MSH6P52701 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC35.48■■■■□ 3.27
MSH6P52701 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC35.48■■■■□ 3.27
MSH6P52701 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC35.48■■■■□ 3.27
MSH6P52701 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
MSH6P52701 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC35.47■■■■□ 3.27
MSH6P52701 SPCS2P3-201ENST00000500401 656 ntBASIC35.47■■■■□ 3.27
MSH6P52701 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
MSH6P52701 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC35.46■■■■□ 3.27
MSH6P52701 MEST-211ENST00000437945 1455 ntTSL 5 BASIC35.45■■■■□ 3.27
MSH6P52701 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC35.45■■■■□ 3.27
MSH6P52701 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
MSH6P52701 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
MSH6P52701 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC35.45■■■■□ 3.27
MSH6P52701 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC35.45■■■■□ 3.27
MSH6P52701 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
MSH6P52701 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
MSH6P52701 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC35.44■■■■□ 3.26
MSH6P52701 AC139795.1-202ENST00000500444 432 ntBASIC35.44■■■■□ 3.26
MSH6P52701 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC35.44■■■■□ 3.26
MSH6P52701 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC35.44■■■■□ 3.26
MSH6P52701 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC35.43■■■■□ 3.26
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms