Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRCA1P38398 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.65■■■□□ 2.66
BRCA1P38398 AC131212.1-201ENST00000613771 668 ntBASIC31.65■■■□□ 2.66
BRCA1P38398 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.64■■■□□ 2.66
BRCA1P38398 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.64■■■□□ 2.66
BRCA1P38398 DUX4L18-201ENST00000553347 1267 ntBASIC31.64■■■□□ 2.66
BRCA1P38398 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.63■■■□□ 2.65
BRCA1P38398 DUX4L9-201ENST00000449051 1259 ntBASIC31.63■■■□□ 2.65
BRCA1P38398 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.63■■■□□ 2.65
BRCA1P38398 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
BRCA1P38398 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.62■■■□□ 2.65
BRCA1P38398 AC126177.7-201ENST00000547904 679 ntBASIC31.62■■■□□ 2.65
BRCA1P38398 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
BRCA1P38398 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
BRCA1P38398 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
BRCA1P38398 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
BRCA1P38398 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
BRCA1P38398 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRCA1P38398 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRCA1P38398 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
BRCA1P38398 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.59■■■□□ 2.65
BRCA1P38398 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
BRCA1P38398 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
BRCA1P38398 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.57■■■□□ 2.65
BRCA1P38398 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
BRCA1P38398 GUSBP5-201ENST00000418136 578 ntBASIC31.57■■■□□ 2.64
BRCA1P38398 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.57■■■□□ 2.64
BRCA1P38398 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.56■■■□□ 2.64
BRCA1P38398 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.56■■■□□ 2.64
BRCA1P38398 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.56■■■□□ 2.64
BRCA1P38398 AC025884.2-201ENST00000553429 711 ntBASIC31.55■■■□□ 2.64
BRCA1P38398 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
BRCA1P38398 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.54■■■□□ 2.64
BRCA1P38398 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
BRCA1P38398 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.53■■■□□ 2.64
BRCA1P38398 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
BRCA1P38398 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
BRCA1P38398 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.52■■■□□ 2.64
BRCA1P38398 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.52■■■□□ 2.64
BRCA1P38398 SPCS2P3-201ENST00000500401 656 ntBASIC31.52■■■□□ 2.64
BRCA1P38398 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.51■■■□□ 2.63
BRCA1P38398 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.5■■■□□ 2.63
BRCA1P38398 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
BRCA1P38398 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.49■■■□□ 2.63
BRCA1P38398 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.49■■■□□ 2.63
BRCA1P38398 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
BRCA1P38398 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
BRCA1P38398 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
BRCA1P38398 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.48■■■□□ 2.63
BRCA1P38398 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
BRCA1P38398 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
BRCA1P38398 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
BRCA1P38398 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
BRCA1P38398 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.47■■■□□ 2.63
BRCA1P38398 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.47■■■□□ 2.63
BRCA1P38398 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
BRCA1P38398 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
BRCA1P38398 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
BRCA1P38398 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
BRCA1P38398 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
BRCA1P38398 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
BRCA1P38398 RAP2CP1-202ENST00000605179 643 ntBASIC31.45■■■□□ 2.63
BRCA1P38398 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 KRT8P33-201ENST00000508125 1423 ntBASIC31.44■■■□□ 2.62
BRCA1P38398 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.44■■■□□ 2.62
BRCA1P38398 THA1P-201ENST00000590384 1145 ntBASIC31.44■■■□□ 2.62
BRCA1P38398 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
BRCA1P38398 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 AC026202.3-201ENST00000600805 1127 ntBASIC31.43■■■□□ 2.62
BRCA1P38398 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
BRCA1P38398 AC010980.1-201ENST00000587192 1142 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 PVT1_1.1-201ENST00000615125 194 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
BRCA1P38398 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.42■■■□□ 2.62
BRCA1P38398 AC093536.1-201ENST00000569153 554 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 MIR4508-201ENST00000584178 70 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.42■■■□□ 2.62
BRCA1P38398 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.41■■■□□ 2.62
BRCA1P38398 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
BRCA1P38398 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
BRCA1P38398 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
BRCA1P38398 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
BRCA1P38398 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
BRCA1P38398 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
BRCA1P38398 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
BRCA1P38398 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
BRCA1P38398 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
BRCA1P38398 MEST-211ENST00000437945 1455 ntTSL 5 BASIC31.39■■■□□ 2.62
BRCA1P38398 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.39■■■□□ 2.62
BRCA1P38398 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
BRCA1P38398 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
BRCA1P38398 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
BRCA1P38398 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.37■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms