Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.72■■■□□ 2.51
SCN4AP35499 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.71■■■□□ 2.51
SCN4AP35499 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC30.71■■■□□ 2.51
SCN4AP35499 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.7■■■□□ 2.51
SCN4AP35499 DUX4L9-201ENST00000449051 1259 ntBASIC30.7■■■□□ 2.51
SCN4AP35499 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.5
SCN4AP35499 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC30.7■■■□□ 2.5
SCN4AP35499 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SCN4AP35499 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SCN4AP35499 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SCN4AP35499 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.69■■■□□ 2.5
SCN4AP35499 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SCN4AP35499 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SCN4AP35499 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.68■■■□□ 2.5
SCN4AP35499 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.68■■■□□ 2.5
SCN4AP35499 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.68■■■□□ 2.5
SCN4AP35499 GUSBP5-201ENST00000418136 578 ntBASIC30.68■■■□□ 2.5
SCN4AP35499 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SCN4AP35499 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.67■■■□□ 2.5
SCN4AP35499 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SCN4AP35499 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC30.67■■■□□ 2.5
SCN4AP35499 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.66■■■□□ 2.5
SCN4AP35499 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC30.66■■■□□ 2.5
SCN4AP35499 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SCN4AP35499 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SCN4AP35499 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
SCN4AP35499 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
SCN4AP35499 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SCN4AP35499 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.64■■■□□ 2.5
SCN4AP35499 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
SCN4AP35499 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
SCN4AP35499 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SCN4AP35499 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
SCN4AP35499 THA1P-201ENST00000590384 1145 ntBASIC30.63■■■□□ 2.49
SCN4AP35499 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SCN4AP35499 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
SCN4AP35499 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SCN4AP35499 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.61■■■□□ 2.49
SCN4AP35499 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SCN4AP35499 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SCN4AP35499 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
SCN4AP35499 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
SCN4AP35499 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
SCN4AP35499 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
SCN4AP35499 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
SCN4AP35499 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
SCN4AP35499 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SCN4AP35499 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SCN4AP35499 AC025884.2-201ENST00000553429 711 ntBASIC30.59■■■□□ 2.49
SCN4AP35499 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.59■■■□□ 2.49
SCN4AP35499 KRT8P33-201ENST00000508125 1423 ntBASIC30.59■■■□□ 2.49
SCN4AP35499 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC30.58■■■□□ 2.49
SCN4AP35499 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
SCN4AP35499 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.57■■■□□ 2.49
SCN4AP35499 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
SCN4AP35499 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SCN4AP35499 AC074183.2-201ENST00000623112 922 ntBASIC30.57■■■□□ 2.48
SCN4AP35499 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SCN4AP35499 RP9P-202ENST00000450133 1212 ntBASIC30.57■■■□□ 2.48
SCN4AP35499 AC010980.1-201ENST00000587192 1142 ntBASIC30.57■■■□□ 2.48
SCN4AP35499 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SCN4AP35499 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.56■■■□□ 2.48
SCN4AP35499 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.56■■■□□ 2.48
SCN4AP35499 AC026202.3-201ENST00000600805 1127 ntBASIC30.56■■■□□ 2.48
SCN4AP35499 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.56■■■□□ 2.48
SCN4AP35499 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SCN4AP35499 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.55■■■□□ 2.48
SCN4AP35499 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SCN4AP35499 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SCN4AP35499 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
SCN4AP35499 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC30.54■■■□□ 2.48
SCN4AP35499 SPCS2P3-201ENST00000500401 656 ntBASIC30.54■■■□□ 2.48
SCN4AP35499 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
SCN4AP35499 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
SCN4AP35499 MIR4508-201ENST00000584178 70 ntBASIC30.53■■■□□ 2.48
SCN4AP35499 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
SCN4AP35499 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.52■■■□□ 2.48
SCN4AP35499 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.52■■■□□ 2.48
SCN4AP35499 SMPD5-203ENST00000639008 1464 ntBASIC30.52■■■□□ 2.48
SCN4AP35499 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SCN4AP35499 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SCN4AP35499 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.52■■■□□ 2.48
SCN4AP35499 RAP2CP1-202ENST00000605179 643 ntBASIC30.52■■■□□ 2.48
SCN4AP35499 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.51■■■□□ 2.47
SCN4AP35499 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.51■■■□□ 2.47
SCN4AP35499 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.51■■■□□ 2.47
SCN4AP35499 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SCN4AP35499 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
SCN4AP35499 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
SCN4AP35499 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.5■■■□□ 2.47
SCN4AP35499 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
SCN4AP35499 AC093536.1-201ENST00000569153 554 ntBASIC30.5■■■□□ 2.47
SCN4AP35499 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
SCN4AP35499 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SCN4AP35499 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.49■■■□□ 2.47
SCN4AP35499 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SCN4AP35499 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.49■■■□□ 2.47
SCN4AP35499 AC139795.1-202ENST00000500444 432 ntBASIC30.47■■■□□ 2.47
SCN4AP35499 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
SCN4AP35499 BHLHE23-202ENST00000612929 1109 ntBASIC30.47■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms