Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC27.48■■□□□ 1.99
TPM1P09493 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
TPM1P09493 AC136428.2-201ENST00000563187 214 ntBASIC27.48■■□□□ 1.99
TPM1P09493 AC018358.1-201ENST00000631079 1402 ntBASIC27.48■■□□□ 1.99
TPM1P09493 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
TPM1P09493 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
TPM1P09493 AL449106.1-201ENST00000608517 1980 ntBASIC27.48■■□□□ 1.99
TPM1P09493 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
TPM1P09493 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
TPM1P09493 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
TPM1P09493 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
TPM1P09493 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
TPM1P09493 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.47■■□□□ 1.99
TPM1P09493 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
TPM1P09493 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
TPM1P09493 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC27.46■■□□□ 1.99
TPM1P09493 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.46■■□□□ 1.99
TPM1P09493 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
TPM1P09493 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC27.45■■□□□ 1.99
TPM1P09493 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.98
TPM1P09493 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
TPM1P09493 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
TPM1P09493 MIR762-201ENST00000390236 83 ntBASIC27.44■■□□□ 1.98
TPM1P09493 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.43■■□□□ 1.98
TPM1P09493 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC27.43■■□□□ 1.98
TPM1P09493 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC27.43■■□□□ 1.98
TPM1P09493 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
TPM1P09493 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.42■■□□□ 1.98
TPM1P09493 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
TPM1P09493 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
TPM1P09493 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TPM1P09493 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.41■■□□□ 1.98
TPM1P09493 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
TPM1P09493 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TPM1P09493 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
TPM1P09493 AC135983.2-203ENST00000454486 1613 ntBASIC27.41■■□□□ 1.98
TPM1P09493 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TPM1P09493 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TPM1P09493 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
TPM1P09493 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC27.4■■□□□ 1.98
TPM1P09493 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
TPM1P09493 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.4■■□□□ 1.98
TPM1P09493 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
TPM1P09493 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
TPM1P09493 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
TPM1P09493 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC27.39■■□□□ 1.98
TPM1P09493 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC27.39■■□□□ 1.98
TPM1P09493 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
TPM1P09493 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
TPM1P09493 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
TPM1P09493 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
TPM1P09493 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
TPM1P09493 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TPM1P09493 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TPM1P09493 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.37■■□□□ 1.97
TPM1P09493 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.37■■□□□ 1.97
TPM1P09493 AC091060.1-201ENST00000623524 1766 ntBASIC27.37■■□□□ 1.97
TPM1P09493 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.37■■□□□ 1.97
TPM1P09493 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
TPM1P09493 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
TPM1P09493 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC27.36■■□□□ 1.97
TPM1P09493 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
TPM1P09493 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
TPM1P09493 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC27.35■■□□□ 1.97
TPM1P09493 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
TPM1P09493 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC27.34■■□□□ 1.97
TPM1P09493 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.34■■□□□ 1.97
TPM1P09493 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
TPM1P09493 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
TPM1P09493 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
TPM1P09493 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.96
TPM1P09493 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
TPM1P09493 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TPM1P09493 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.32■■□□□ 1.96
TPM1P09493 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC27.32■■□□□ 1.96
TPM1P09493 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TPM1P09493 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TPM1P09493 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.31■■□□□ 1.96
TPM1P09493 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
TPM1P09493 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
TPM1P09493 WHAMMP2-203ENST00000563942 1603 ntBASIC27.31■■□□□ 1.96
TPM1P09493 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
TPM1P09493 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
TPM1P09493 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.31■■□□□ 1.96
TPM1P09493 EI24-212ENST00000615917 1407 ntTSL 2 BASIC27.31■■□□□ 1.96
TPM1P09493 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
TPM1P09493 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
TPM1P09493 AC108673.1-201ENST00000510422 1159 ntBASIC27.3■■□□□ 1.96
TPM1P09493 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC27.3■■□□□ 1.96
TPM1P09493 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC27.3■■□□□ 1.96
TPM1P09493 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.3■■□□□ 1.96
TPM1P09493 AC005559.1-201ENST00000589661 871 ntBASIC27.29■■□□□ 1.96
TPM1P09493 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TPM1P09493 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TPM1P09493 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TPM1P09493 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TPM1P09493 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
TPM1P09493 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
TPM1P09493 AC145676.1-201ENST00000514988 2004 ntBASIC27.28■■□□□ 1.96
TPM1P09493 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms