Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL1A1P02452 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.8■■■□□ 2.52
COL1A1P02452 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.79■■■□□ 2.52
COL1A1P02452 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.79■■■□□ 2.52
COL1A1P02452 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL1A1P02452 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.78■■■□□ 2.52
COL1A1P02452 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL1A1P02452 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL1A1P02452 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL1A1P02452 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.78■■■□□ 2.52
COL1A1P02452 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.78■■■□□ 2.52
COL1A1P02452 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL1A1P02452 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.77■■■□□ 2.52
COL1A1P02452 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL1A1P02452 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
COL1A1P02452 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
COL1A1P02452 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.76■■■□□ 2.51
COL1A1P02452 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL1A1P02452 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.75■■■□□ 2.51
COL1A1P02452 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL1A1P02452 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.75■■■□□ 2.51
COL1A1P02452 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
COL1A1P02452 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL1A1P02452 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.71■■■□□ 2.51
COL1A1P02452 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL1A1P02452 AC092296.2-201ENST00000589470 999 ntBASIC30.7■■■□□ 2.51
COL1A1P02452 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
COL1A1P02452 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.7■■■□□ 2.5
COL1A1P02452 AL157400.5-201ENST00000507624 621 ntBASIC30.7■■■□□ 2.5
COL1A1P02452 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL1A1P02452 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
COL1A1P02452 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
COL1A1P02452 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL1A1P02452 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL1A1P02452 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL1A1P02452 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
COL1A1P02452 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.68■■■□□ 2.5
COL1A1P02452 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.68■■■□□ 2.5
COL1A1P02452 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
COL1A1P02452 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL1A1P02452 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.68■■■□□ 2.5
COL1A1P02452 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC30.68■■■□□ 2.5
COL1A1P02452 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
COL1A1P02452 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL1A1P02452 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
COL1A1P02452 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
COL1A1P02452 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL1A1P02452 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL1A1P02452 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
COL1A1P02452 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL1A1P02452 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL1A1P02452 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.63■■■□□ 2.49
COL1A1P02452 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.63■■■□□ 2.49
COL1A1P02452 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL1A1P02452 AC018358.1-201ENST00000631079 1402 ntBASIC30.63■■■□□ 2.49
COL1A1P02452 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.63■■■□□ 2.49
COL1A1P02452 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL1A1P02452 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.63■■■□□ 2.49
COL1A1P02452 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL1A1P02452 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
COL1A1P02452 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30.61■■■□□ 2.49
COL1A1P02452 MOB2-207ENST00000614710 705 ntTSL 5 BASIC30.61■■■□□ 2.49
COL1A1P02452 U85056.1-201ENST00000616429 682 ntBASIC30.61■■■□□ 2.49
COL1A1P02452 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.61■■■□□ 2.49
COL1A1P02452 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
COL1A1P02452 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
COL1A1P02452 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL1A1P02452 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL1A1P02452 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL1A1P02452 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL1A1P02452 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL1A1P02452 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL1A1P02452 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL1A1P02452 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC30.58■■■□□ 2.49
COL1A1P02452 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL1A1P02452 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL1A1P02452 AP002414.2-202ENST00000590929 1450 ntBASIC30.58■■■□□ 2.49
COL1A1P02452 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.57■■■□□ 2.48
COL1A1P02452 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL1A1P02452 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.57■■■□□ 2.48
COL1A1P02452 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL1A1P02452 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC30.57■■■□□ 2.48
COL1A1P02452 AL033527.3-201ENST00000566366 1196 ntBASIC30.57■■■□□ 2.48
COL1A1P02452 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL1A1P02452 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL1A1P02452 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
COL1A1P02452 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.56■■■□□ 2.48
COL1A1P02452 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL1A1P02452 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.55■■■□□ 2.48
COL1A1P02452 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL1A1P02452 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL1A1P02452 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
COL1A1P02452 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
COL1A1P02452 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
COL1A1P02452 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
COL1A1P02452 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.52■■■□□ 2.48
COL1A1P02452 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
COL1A1P02452 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
COL1A1P02452 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
COL1A1P02452 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.51■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms