Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC016575.1-201ENST00000607026 382 ntBASIC24.56■■□□□ 1.52
VPS4BO75351 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.56■■□□□ 1.52
VPS4BO75351 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
VPS4BO75351 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
VPS4BO75351 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS4BO75351 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
VPS4BO75351 MIR3648-2-201ENST00000581792 180 ntBASIC24.55■■□□□ 1.52
VPS4BO75351 MIR3648-1-201ENST00000615959 180 ntBASIC24.55■■□□□ 1.52
VPS4BO75351 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.55■■□□□ 1.52
VPS4BO75351 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.55■■□□□ 1.52
VPS4BO75351 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS4BO75351 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS4BO75351 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.54■■□□□ 1.52
VPS4BO75351 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.54■■□□□ 1.52
VPS4BO75351 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS4BO75351 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS4BO75351 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS4BO75351 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS4BO75351 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
VPS4BO75351 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS4BO75351 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
VPS4BO75351 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
VPS4BO75351 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS4BO75351 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.51■■□□□ 1.51
VPS4BO75351 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.51■■□□□ 1.51
VPS4BO75351 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.51■■□□□ 1.51
VPS4BO75351 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.5■■□□□ 1.51
VPS4BO75351 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.5■■□□□ 1.51
VPS4BO75351 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.5■■□□□ 1.51
VPS4BO75351 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.5■■□□□ 1.51
VPS4BO75351 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS4BO75351 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
VPS4BO75351 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS4BO75351 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.48■■□□□ 1.51
VPS4BO75351 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.48■■□□□ 1.51
VPS4BO75351 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.48■■□□□ 1.51
VPS4BO75351 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS4BO75351 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.47■■□□□ 1.51
VPS4BO75351 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS4BO75351 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS4BO75351 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
VPS4BO75351 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.47■■□□□ 1.51
VPS4BO75351 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.47■■□□□ 1.51
VPS4BO75351 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.47■■□□□ 1.51
VPS4BO75351 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
VPS4BO75351 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.46■■□□□ 1.51
VPS4BO75351 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.46■■□□□ 1.51
VPS4BO75351 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
VPS4BO75351 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
VPS4BO75351 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
VPS4BO75351 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
VPS4BO75351 AC108673.1-201ENST00000510422 1159 ntBASIC24.44■■□□□ 1.5
VPS4BO75351 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.44■■□□□ 1.5
VPS4BO75351 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
VPS4BO75351 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS4BO75351 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
VPS4BO75351 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS4BO75351 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS4BO75351 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.43■■□□□ 1.5
VPS4BO75351 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.43■■□□□ 1.5
VPS4BO75351 AC018358.1-201ENST00000631079 1402 ntBASIC24.43■■□□□ 1.5
VPS4BO75351 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS4BO75351 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
VPS4BO75351 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
VPS4BO75351 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS4BO75351 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.41■■□□□ 1.5
VPS4BO75351 DUX4L11-201ENST00000611504 1267 ntBASIC24.41■■□□□ 1.5
VPS4BO75351 DUX4L12-201ENST00000614593 1267 ntBASIC24.41■■□□□ 1.5
VPS4BO75351 DUX4L14-201ENST00000621227 1267 ntBASIC24.41■■□□□ 1.5
VPS4BO75351 AC135983.2-203ENST00000454486 1613 ntBASIC24.4■■□□□ 1.5
VPS4BO75351 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
VPS4BO75351 LINC01971-201ENST00000617888 1048 ntBASIC24.39■■□□□ 1.49
VPS4BO75351 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.39■■□□□ 1.49
VPS4BO75351 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
VPS4BO75351 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
VPS4BO75351 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
VPS4BO75351 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS4BO75351 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS4BO75351 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS4BO75351 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
VPS4BO75351 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.37■■□□□ 1.49
VPS4BO75351 CR559946.2-201ENST00000623684 991 ntBASIC24.37■■□□□ 1.49
VPS4BO75351 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS4BO75351 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.37■■□□□ 1.49
VPS4BO75351 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS4BO75351 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
VPS4BO75351 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS4BO75351 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
VPS4BO75351 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.35■■□□□ 1.49
VPS4BO75351 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS4BO75351 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
VPS4BO75351 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.35■■□□□ 1.49
VPS4BO75351 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.35■■□□□ 1.49
VPS4BO75351 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.35■■□□□ 1.49
VPS4BO75351 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS4BO75351 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS4BO75351 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VPS4BO75351 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
VPS4BO75351 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
VPS4BO75351 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms