Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
TRIM13O60858 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM13O60858 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.73■■□□□ 1.55
TRIM13O60858 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TRIM13O60858 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TRIM13O60858 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TRIM13O60858 AC091060.1-201ENST00000623524 1766 ntBASIC24.72■■□□□ 1.55
TRIM13O60858 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.72■■□□□ 1.55
TRIM13O60858 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
TRIM13O60858 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TRIM13O60858 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.71■■□□□ 1.55
TRIM13O60858 AC108673.1-201ENST00000510422 1159 ntBASIC24.71■■□□□ 1.55
TRIM13O60858 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.7■■□□□ 1.55
TRIM13O60858 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.7■■□□□ 1.55
TRIM13O60858 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.7■■□□□ 1.54
TRIM13O60858 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.7■■□□□ 1.54
TRIM13O60858 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TRIM13O60858 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
TRIM13O60858 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
TRIM13O60858 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.69■■□□□ 1.54
TRIM13O60858 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TRIM13O60858 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TRIM13O60858 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
TRIM13O60858 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
TRIM13O60858 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
TRIM13O60858 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TRIM13O60858 LINC00273-201ENST00000539813 1452 ntBASIC24.67■■□□□ 1.54
TRIM13O60858 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.67■■□□□ 1.54
TRIM13O60858 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.67■■□□□ 1.54
TRIM13O60858 AC135731.1-201ENST00000569415 2548 ntBASIC24.66■■□□□ 1.54
TRIM13O60858 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM13O60858 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.66■■□□□ 1.54
TRIM13O60858 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM13O60858 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM13O60858 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.66■■□□□ 1.54
TRIM13O60858 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM13O60858 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
TRIM13O60858 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TRIM13O60858 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
TRIM13O60858 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
TRIM13O60858 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
TRIM13O60858 MIR6090-201ENST00000622481 60 ntBASIC24.64■■□□□ 1.54
TRIM13O60858 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
TRIM13O60858 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
TRIM13O60858 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
TRIM13O60858 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
TRIM13O60858 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
TRIM13O60858 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
TRIM13O60858 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
TRIM13O60858 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
TRIM13O60858 SUZ12P1-203ENST00000578195 985 ntBASIC24.62■■□□□ 1.53
TRIM13O60858 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.62■■□□□ 1.53
TRIM13O60858 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TRIM13O60858 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TRIM13O60858 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TRIM13O60858 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TRIM13O60858 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TRIM13O60858 AC145676.1-201ENST00000514988 2004 ntBASIC24.58■■□□□ 1.53
TRIM13O60858 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.58■■□□□ 1.52
TRIM13O60858 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.57■■□□□ 1.52
TRIM13O60858 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM13O60858 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.57■■□□□ 1.52
TRIM13O60858 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM13O60858 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM13O60858 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM13O60858 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM13O60858 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM13O60858 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.56■■□□□ 1.52
TRIM13O60858 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.56■■□□□ 1.52
TRIM13O60858 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.55■■□□□ 1.52
TRIM13O60858 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TRIM13O60858 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.55■■□□□ 1.52
TRIM13O60858 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
TRIM13O60858 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TRIM13O60858 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM13O60858 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM13O60858 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
TRIM13O60858 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM13O60858 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM13O60858 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
TRIM13O60858 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.53■■□□□ 1.52
TRIM13O60858 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
TRIM13O60858 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.53■■□□□ 1.52
TRIM13O60858 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM13O60858 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM13O60858 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.53■■□□□ 1.52
TRIM13O60858 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.53■■□□□ 1.52
TRIM13O60858 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM13O60858 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM13O60858 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.52■■□□□ 1.52
TRIM13O60858 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM13O60858 DUX4L28-201ENST00000623687 678 ntBASIC24.52■■□□□ 1.52
TRIM13O60858 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM13O60858 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.51■■□□□ 1.51
TRIM13O60858 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM13O60858 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.51■■□□□ 1.51
TRIM13O60858 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM13O60858 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.51■■□□□ 1.51
TRIM13O60858 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM13O60858 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms