Protein–RNA interactions for Protein: O43295

SRGAP3, SLIT-ROBO Rho GTPase-activating protein 3, humanhuman

Predictions only

Length 1,099 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3O43295 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
SRGAP3O43295 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SRGAP3O43295 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
SRGAP3O43295 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SRGAP3O43295 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
SRGAP3O43295 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.46■■■□□ 2.63
SRGAP3O43295 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
SRGAP3O43295 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
SRGAP3O43295 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
SRGAP3O43295 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
SRGAP3O43295 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.45■■■□□ 2.63
SRGAP3O43295 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SRGAP3O43295 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
SRGAP3O43295 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
SRGAP3O43295 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SRGAP3O43295 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.42■■■□□ 2.62
SRGAP3O43295 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
SRGAP3O43295 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
SRGAP3O43295 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
SRGAP3O43295 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.41■■■□□ 2.62
SRGAP3O43295 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SRGAP3O43295 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.41■■■□□ 2.62
SRGAP3O43295 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC31.4■■■□□ 2.62
SRGAP3O43295 AC148477.6-201ENST00000623746 465 ntBASIC31.4■■■□□ 2.62
SRGAP3O43295 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SRGAP3O43295 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.39■■■□□ 2.62
SRGAP3O43295 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.39■■■□□ 2.62
SRGAP3O43295 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SRGAP3O43295 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.39■■■□□ 2.62
SRGAP3O43295 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
SRGAP3O43295 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SRGAP3O43295 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
SRGAP3O43295 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.38■■■□□ 2.61
SRGAP3O43295 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
SRGAP3O43295 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
SRGAP3O43295 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
SRGAP3O43295 MIR219A2-201ENST00000608502 1504 ntBASIC31.37■■■□□ 2.61
SRGAP3O43295 AC018358.1-201ENST00000631079 1402 ntBASIC31.36■■■□□ 2.61
SRGAP3O43295 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SRGAP3O43295 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SRGAP3O43295 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.34■■■□□ 2.61
SRGAP3O43295 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.34■■■□□ 2.61
SRGAP3O43295 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.34■■■□□ 2.61
SRGAP3O43295 AC142086.6-201ENST00000621154 1765 ntBASIC31.34■■■□□ 2.61
SRGAP3O43295 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SRGAP3O43295 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SRGAP3O43295 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
SRGAP3O43295 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.33■■■□□ 2.61
SRGAP3O43295 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SRGAP3O43295 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SRGAP3O43295 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SRGAP3O43295 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SRGAP3O43295 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SRGAP3O43295 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SRGAP3O43295 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SRGAP3O43295 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.31■■■□□ 2.6
SRGAP3O43295 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.31■■■□□ 2.6
SRGAP3O43295 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SRGAP3O43295 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SRGAP3O43295 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.3■■■□□ 2.6
SRGAP3O43295 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
SRGAP3O43295 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
SRGAP3O43295 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.29■■■□□ 2.6
SRGAP3O43295 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.28■■■□□ 2.6
SRGAP3O43295 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
SRGAP3O43295 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SRGAP3O43295 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC31.27■■■□□ 2.6
SRGAP3O43295 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.27■■■□□ 2.6
SRGAP3O43295 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.27■■■□□ 2.6
SRGAP3O43295 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SRGAP3O43295 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
SRGAP3O43295 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SRGAP3O43295 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.26■■■□□ 2.59
SRGAP3O43295 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
SRGAP3O43295 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
SRGAP3O43295 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SRGAP3O43295 LINC01003-201ENST00000564834 1764 ntBASIC31.25■■■□□ 2.59
SRGAP3O43295 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SRGAP3O43295 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SRGAP3O43295 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.24■■■□□ 2.59
SRGAP3O43295 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SRGAP3O43295 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.23■■■□□ 2.59
SRGAP3O43295 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
SRGAP3O43295 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SRGAP3O43295 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SRGAP3O43295 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SRGAP3O43295 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.22■■■□□ 2.59
SRGAP3O43295 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SRGAP3O43295 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.22■■■□□ 2.59
SRGAP3O43295 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
SRGAP3O43295 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SRGAP3O43295 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms