RNA–Protein interactions for RNA: ENST00000640931.1

RTTN-223, Transcript of rotatin, human

TSL 5

Gene RTTN, Length 2,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-223	ENST00000640931	AEBP2	Q6ZN18	517 aa	Predicted RBP	17.91	■□□□□ 0.46
RTTN-223	ENST00000640931	CHIC1	Q5VXU3	224 aa		16.93	■□□□□ 0.3
RTTN-223	ENST00000640931	NISCH	Q9Y2I1	1504 aa		16.38	■□□□□ 0.21
RTTN-223	ENST00000640931	SENP3	Q9H4L4	574 aa	Predicted RBP	15.53	■□□□□ 0.08
RTTN-223	ENST00000640931	PHF23	Q9BUL5	403 aa	Predicted RBP	15.18	■□□□□ 0.02
RTTN-223	ENST00000640931	FOXD1	Q16676	465 aa		14.38	□□□□□ -0.11
RTTN-223	ENST00000640931	PELP1	Q8IZL8	1130 aa	Known RBP	14.35	□□□□□ -0.11
RTTN-223	ENST00000640931	MYT1	Q01538	1121 aa		14.2	□□□□□ -0.14
RTTN-223	ENST00000640931	CCDC180	Q9P1Z9	1646 aa		13.99	□□□□□ -0.17
RTTN-223	ENST00000640931	SHROOM4	Q9ULL8	1493 aa		13.9	□□□□□ -0.18
RTTN-223	ENST00000640931	POTED	Q86YR6	584 aa		13.88	□□□□□ -0.19
RTTN-223	ENST00000640931	DCAF8L2	P0C7V8	631 aa		13.81	□□□□□ -0.2
RTTN-223	ENST00000640931	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.78	□□□□□ -0.2
RTTN-223	ENST00000640931	MSH5	O43196	834 aa		13.76	□□□□□ -0.21
RTTN-223	ENST00000640931	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.71	□□□□□ -0.21
RTTN-223	ENST00000640931	ABCC9	O60706	1549 aa		13.43	□□□□□ -0.26
RTTN-223	ENST00000640931	SUPT5H	O00267	1087 aa	Known RBP	13.43	□□□□□ -0.26
RTTN-223	ENST00000640931	DNAJC5B	Q9UF47	199 aa		13.38	□□□□□ -0.27
RTTN-223	ENST00000640931	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.36	□□□□□ -0.27
RTTN-223	ENST00000640931	DCAF1	Q9Y4B6	1507 aa		13.34	□□□□□ -0.27
RTTN-223	ENST00000640931	PLPPR3	Q6T4P5	718 aa		13.31	□□□□□ -0.28
RTTN-223	ENST00000640931	SCRIB	Q14160	1630 aa		13.21	□□□□□ -0.29
RTTN-223	ENST00000640931	DNAJC5	Q9H3Z4	198 aa		13.14	□□□□□ -0.31
RTTN-223	ENST00000640931	PRKCSH	P14314	528 aa	Predicted RBP	13.09	□□□□□ -0.31
RTTN-223	ENST00000640931	PPP6R1	Q9UPN7	881 aa		13.09	□□□□□ -0.31
RTTN-223	ENST00000640931	HRC	P23327	699 aa		13.08	□□□□□ -0.32
RTTN-223	ENST00000640931	MYO15B	Q96JP2	1530 aa		13.05	□□□□□ -0.32
RTTN-223	ENST00000640931	ADRA2B	P18089	450 aa		13.04	□□□□□ -0.32
RTTN-223	ENST00000640931	NACAD	O15069	1562 aa		13.03	□□□□□ -0.32
RTTN-223	ENST00000640931	ERICH6	Q7L0X2	663 aa		13.01	□□□□□ -0.33
RTTN-223	ENST00000640931	APLP2	Q06481	763 aa		12.93	□□□□□ -0.34
RTTN-223	ENST00000640931	RB1CC1	Q8TDY2	1594 aa		12.91	□□□□□ -0.34
RTTN-223	ENST00000640931	CECR2	Q9BXF3	1484 aa		12.9	□□□□□ -0.34
RTTN-223	ENST00000640931	RSF1	Q96T23	1441 aa	Predicted RBP	12.88	□□□□□ -0.35
RTTN-223	ENST00000640931	SLC24A1	O60721	1099 aa		12.87	□□□□□ -0.35
RTTN-223	ENST00000640931	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
RTTN-223	ENST00000640931	SCAF1	Q9H7N4	1312 aa	Known RBP	12.81	□□□□□ -0.36
RTTN-223	ENST00000640931	MROH2B	Q7Z745	1585 aa		12.78	□□□□□ -0.36
RTTN-223	ENST00000640931	BCL11A	Q9H165	835 aa		12.78	□□□□□ -0.36
RTTN-223	ENST00000640931	UNC13A	Q9UPW8	1703 aa		12.78	□□□□□ -0.36
RTTN-223	ENST00000640931	WIZ	O95785	1651 aa		12.7	□□□□□ -0.38
RTTN-223	ENST00000640931	BICRA	Q9NZM4	1560 aa		12.66	□□□□□ -0.38
RTTN-223	ENST00000640931	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.58	□□□□□ -0.4
RTTN-223	ENST00000640931	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.55	□□□□□ -0.4
RTTN-223	ENST00000640931	SMARCA4	P51532	1647 aa		12.54	□□□□□ -0.4
RTTN-223	ENST00000640931	LOC105371045	A0A1W2PR82	267 aa		12.54	□□□□□ -0.4
RTTN-223	ENST00000640931	CENPB	P07199	599 aa	Predicted RBP	12.49	□□□□□ -0.41
RTTN-223	ENST00000640931	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.48	□□□□□ -0.41
RTTN-223	ENST00000640931	TRIM41	Q8WV44	630 aa		12.45	□□□□□ -0.42
RTTN-223	ENST00000640931	EHMT2	Q96KQ7	1210 aa		12.45	□□□□□ -0.42
RTTN-223	ENST00000640931	CCDC88B	A6NC98	1476 aa		12.42	□□□□□ -0.42
RTTN-223	ENST00000640931	TOP2A	P11388	1531 aa	Known RBP	12.42	□□□□□ -0.42
RTTN-223	ENST00000640931	DAXX	Q9UER7	740 aa	Predicted RBP	12.41	□□□□□ -0.42
RTTN-223	ENST00000640931	SMARCA2	P51531	1590 aa		12.38	□□□□□ -0.43
RTTN-223	ENST00000640931	EIF4G1	Q04637	1599 aa	Known RBP	12.34	□□□□□ -0.43
RTTN-223	ENST00000640931	ATAD2B	Q9ULI0	1458 aa		12.32	□□□□□ -0.44
RTTN-223	ENST00000640931	ABCC8	Q09428	1581 aa		12.32	□□□□□ -0.44
RTTN-223	ENST00000640931	ACIN1	Q9UKV3	1341 aa	Known RBP	12.3	□□□□□ -0.44
RTTN-223	ENST00000640931	PEG3	Q9GZU2	1588 aa		12.26	□□□□□ -0.45
RTTN-223	ENST00000640931	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.25	□□□□□ -0.45
RTTN-223	ENST00000640931	DMRT2	Q9Y5R5	561 aa		12.23	□□□□□ -0.45
RTTN-223	ENST00000640931	ANP32E	Q9BTT0	268 aa		12.19	□□□□□ -0.46
RTTN-223	ENST00000640931	ZEB1	P37275	1124 aa	Predicted RBP	12.15	□□□□□ -0.46
RTTN-223	ENST00000640931	GTF3C3	Q9Y5Q9	886 aa		12.14	□□□□□ -0.47
RTTN-223	ENST00000640931	RUSC2	Q8N2Y8	1516 aa		12.14	□□□□□ -0.47
RTTN-223	ENST00000640931	SOGA1	O94964	1423 aa		12.14	□□□□□ -0.47
RTTN-223	ENST00000640931	PCGF6	Q9BYE7	350 aa		12.14	□□□□□ -0.47
RTTN-223	ENST00000640931	CUX2	O14529	1486 aa		12.13	□□□□□ -0.47
RTTN-223	ENST00000640931	EIF5B	O60841	1220 aa	Known RBP	12.13	□□□□□ -0.47
RTTN-223	ENST00000640931	CC2D2A	Q9P2K1	1620 aa		12.12	□□□□□ -0.47
RTTN-223	ENST00000640931	NCAPD3	P42695	1498 aa		12.1	□□□□□ -0.47
RTTN-223	ENST00000640931	NEUROD1	Q13562	356 aa		12.09	□□□□□ -0.47
RTTN-223	ENST00000640931	SYNJ1	O43426	1573 aa		12.08	□□□□□ -0.48
RTTN-223	ENST00000640931	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.07	□□□□□ -0.48
RTTN-223	ENST00000640931	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.06	□□□□□ -0.48
RTTN-223	ENST00000640931	HMGXB3	Q12766	1538 aa		12.04	□□□□□ -0.48
RTTN-223	ENST00000640931	CSRNP3	Q8WYN3	585 aa		11.97	□□□□□ -0.49
RTTN-223	ENST00000640931	UBE2Q2	Q8WVN8	375 aa		11.96	□□□□□ -0.5
RTTN-223	ENST00000640931	CACNB1	Q02641	598 aa	Predicted RBP	11.93	□□□□□ -0.5
RTTN-223	ENST00000640931	CFTR	P13569	1480 aa		11.92	□□□□□ -0.5
RTTN-223	ENST00000640931	UBTF	P17480	764 aa	Known RBP	11.92	□□□□□ -0.5
RTTN-223	ENST00000640931	CUX1	P39880	1505 aa		11.91	□□□□□ -0.5
RTTN-223	ENST00000640931	RANGAP1	P46060	587 aa	Predicted RBP	11.91	□□□□□ -0.5
RTTN-223	ENST00000640931	NES	P48681	1621 aa		11.89	□□□□□ -0.51
RTTN-223	ENST00000640931	TOP2B	Q02880	1626 aa		11.88	□□□□□ -0.51
RTTN-223	ENST00000640931	TRIM26	Q12899	539 aa	Predicted RBP	11.87	□□□□□ -0.51
RTTN-223	ENST00000640931	CADPS	Q9ULU8	1353 aa		11.87	□□□□□ -0.51
RTTN-223	ENST00000640931	CEP162	Q5TB80	1403 aa		11.86	□□□□□ -0.51
RTTN-223	ENST00000640931	BIVM-ERCC5	R4GMW8	1640 aa		11.84	□□□□□ -0.51
RTTN-223	ENST00000640931	RAPGEF2	Q9Y4G8	1499 aa		11.83	□□□□□ -0.52
RTTN-223	ENST00000640931	EEA1	Q15075	1411 aa		11.83	□□□□□ -0.52
RTTN-223	ENST00000640931	TNIK	Q9UKE5	1360 aa		11.82	□□□□□ -0.52
RTTN-223	ENST00000640931	GOLGA3	Q08378	1498 aa		11.82	□□□□□ -0.52
RTTN-223	ENST00000640931	FANCD2	Q9BXW9	1451 aa		11.77	□□□□□ -0.53
RTTN-223	ENST00000640931	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.77	□□□□□ -0.53
RTTN-223	ENST00000640931	CEP164	Q9UPV0	1460 aa		11.76	□□□□□ -0.53
RTTN-223	ENST00000640931	KIF21B	O75037	1637 aa		11.74	□□□□□ -0.53
RTTN-223	ENST00000640931	FGD5	Q6ZNL6	1462 aa		11.74	□□□□□ -0.53
RTTN-223	ENST00000640931	PRDM2	Q13029	1718 aa		11.74	□□□□□ -0.53
RTTN-223	ENST00000640931	ERCC6	Q03468	1493 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms