RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 NISCHQ9Y2I1 1504 aa10.87□□□□□ -0.67
SCN3A-210ENST00000640652 CCDC180Q9P1Z9 1646 aa9.55□□□□□ -0.88
SCN3A-210ENST00000640652 SHROOM4Q9ULL8 1493 aa9.33□□□□□ -0.92
SCN3A-210ENST00000640652 SUPT5HO00267 1087 aaKnown RBP9.25□□□□□ -0.93
SCN3A-210ENST00000640652 DCAF8L2P0C7V8 631 aa9.21□□□□□ -0.93
SCN3A-210ENST00000640652 ZCCHC6Q5VYS8 1495 aaKnown RBP9.18□□□□□ -0.94
SCN3A-210ENST00000640652 DCAF1Q9Y4B6 1507 aa8.95□□□□□ -0.98
SCN3A-210ENST00000640652 PCGF6Q9BYE7 350 aa8.83□□□□□ -1
SCN3A-210ENST00000640652 ABCC9O60706 1549 aa8.82□□□□□ -1
SCN3A-210ENST00000640652 SCRIBQ14160 1630 aa8.82□□□□□ -1
SCN3A-210ENST00000640652 CHIC1Q5VXU3 224 aa8.81□□□□□ -1
SCN3A-210ENST00000640652 HRCP23327 699 aa8.78□□□□□ -1
SCN3A-210ENST00000640652 ZEB1P37275 1124 aaPredicted RBP8.77□□□□□ -1.01
SCN3A-210ENST00000640652 NACADO15069 1562 aa8.71□□□□□ -1.02
SCN3A-210ENST00000640652 TRIM41Q8WV44 630 aa8.7□□□□□ -1.02
SCN3A-210ENST00000640652 MYO15BQ96JP2 1530 aa8.7□□□□□ -1.02
SCN3A-210ENST00000640652 TRIM26Q12899 539 aaPredicted RBP8.69□□□□□ -1.02
SCN3A-210ENST00000640652 RB1CC1Q8TDY2 1594 aa8.66□□□□□ -1.02
SCN3A-210ENST00000640652 PELP1Q8IZL8 1130 aaKnown RBP8.56□□□□□ -1.04
SCN3A-210ENST00000640652 UNC13AQ9UPW8 1703 aa8.55□□□□□ -1.04
SCN3A-210ENST00000640652 FAM9AQ8IZU1 332 aaPredicted RBP8.54□□□□□ -1.04
SCN3A-210ENST00000640652 LOC105371045A0A1W2PR82 267 aa8.53□□□□□ -1.04
SCN3A-210ENST00000640652 BAZ1AQ9NRL2 1556 aaPredicted RBP8.51□□□□□ -1.05
SCN3A-210ENST00000640652 RSF1Q96T23 1441 aaPredicted RBP8.5□□□□□ -1.05
SCN3A-210ENST00000640652 WIZO95785 1651 aa8.49□□□□□ -1.05
SCN3A-210ENST00000640652 EHMT2Q96KQ7 1210 aa8.48□□□□□ -1.05
SCN3A-210ENST00000640652 APLP2Q06481 763 aa8.46□□□□□ -1.05
SCN3A-210ENST00000640652 CCER1Q8TC90 406 aaPredicted RBP8.46□□□□□ -1.06
SCN3A-210ENST00000640652 CENPBP07199 599 aaPredicted RBP8.45□□□□□ -1.06
SCN3A-210ENST00000640652 SMARCA4P51532 1647 aa8.41□□□□□ -1.06
SCN3A-210ENST00000640652 PPARGC1BQ86YN6 1023 aaKnown RBP8.4□□□□□ -1.06
SCN3A-210ENST00000640652 TOP2AP11388 1531 aaKnown RBP8.39□□□□□ -1.07
SCN3A-210ENST00000640652 UBTFP17480 764 aaKnown RBP8.37□□□□□ -1.07
SCN3A-210ENST00000640652 MROH2BQ7Z745 1585 aa8.36□□□□□ -1.07
SCN3A-210ENST00000640652 EEA1Q15075 1411 aa8.35□□□□□ -1.07
SCN3A-210ENST00000640652 MYT1Q01538 1121 aa8.31□□□□□ -1.08
SCN3A-210ENST00000640652 PRDM2Q13029 1718 aa8.3□□□□□ -1.08
SCN3A-210ENST00000640652 CECR2Q9BXF3 1484 aa8.3□□□□□ -1.08
SCN3A-210ENST00000640652 TTBK1Q5TCY1 1321 aaPredicted RBP8.28□□□□□ -1.08
SCN3A-210ENST00000640652 ABCC8Q09428 1581 aa8.27□□□□□ -1.09
SCN3A-210ENST00000640652 GOLGA3Q08378 1498 aa8.26□□□□□ -1.09
SCN3A-210ENST00000640652 SMARCA2P51531 1590 aa8.26□□□□□ -1.09
SCN3A-210ENST00000640652 CEP162Q5TB80 1403 aa8.24□□□□□ -1.09
SCN3A-210ENST00000640652 DIEXFQ68CQ4 756 aaKnown RBP8.24□□□□□ -1.09
SCN3A-210ENST00000640652 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.24□□□□□ -1.09
SCN3A-210ENST00000640652 CEP164Q9UPV0 1460 aa8.22□□□□□ -1.09
SCN3A-210ENST00000640652 KIF21BO75037 1637 aa8.21□□□□□ -1.1
SCN3A-210ENST00000640652 BAZ1BQ9UIG0 1483 aaKnown RBP8.21□□□□□ -1.1
SCN3A-210ENST00000640652 CCDC88BA6NC98 1476 aa8.2□□□□□ -1.1
SCN3A-210ENST00000640652 EIF4G1Q04637 1599 aaKnown RBP8.2□□□□□ -1.1
SCN3A-210ENST00000640652 TNIKQ9UKE5 1360 aa8.18□□□□□ -1.1
SCN3A-210ENST00000640652 WRNQ14191 1432 aaPredicted RBP eCLIP8.18□□□□□ -1.1
SCN3A-210ENST00000640652 CSRNP3Q8WYN3 585 aa8.16□□□□□ -1.1
SCN3A-210ENST00000640652 CLIP1P30622 1438 aa8.16□□□□□ -1.1
SCN3A-210ENST00000640652 PEG3Q9GZU2 1588 aa8.14□□□□□ -1.11
SCN3A-210ENST00000640652 RANGAP1P46060 587 aaPredicted RBP8.12□□□□□ -1.11
SCN3A-210ENST00000640652 CLSPNQ9HAW4 1339 aa8.11□□□□□ -1.11
SCN3A-210ENST00000640652 ACIN1Q9UKV3 1341 aaKnown RBP8.11□□□□□ -1.11
SCN3A-210ENST00000640652 ZNF316A6NFI3 1004 aaPredicted RBP8.1□□□□□ -1.11
SCN3A-210ENST00000640652 YTHDC1Q96MU7 727 aaKnown RBP8.1□□□□□ -1.11
SCN3A-210ENST00000640652 HNRNPUL2Q1KMD3 747 aaKnown RBP8.09□□□□□ -1.11
SCN3A-210ENST00000640652 TOP2BQ02880 1626 aa8.09□□□□□ -1.11
SCN3A-210ENST00000640652 PABPN1Q86U42 306 aaKnown RBP eCLIP8.08□□□□□ -1.12
SCN3A-210ENST00000640652 SYNJ1O43426 1573 aa8.07□□□□□ -1.12
SCN3A-210ENST00000640652 BIVM-ERCC5R4GMW8 1640 aa8.07□□□□□ -1.12
SCN3A-210ENST00000640652 VPS8Q8N3P4 1428 aa8.07□□□□□ -1.12
SCN3A-210ENST00000640652 SOGA1O94964 1423 aa8.07□□□□□ -1.12
SCN3A-210ENST00000640652 ERICH3Q5RHP9 1530 aa8.06□□□□□ -1.12
SCN3A-210ENST00000640652 GTF3C3Q9Y5Q9 886 aa8.04□□□□□ -1.12
SCN3A-210ENST00000640652 BICRAQ9NZM4 1560 aa8.03□□□□□ -1.12
SCN3A-210ENST00000640652 KIF27Q86VH2 1401 aa8.03□□□□□ -1.12
SCN3A-210ENST00000640652 SCAF1Q9H7N4 1312 aaKnown RBP8.03□□□□□ -1.12
SCN3A-210ENST00000640652 NEFLP07196 543 aa8.02□□□□□ -1.13
SCN3A-210ENST00000640652 HMGXB3Q12766 1538 aa8.01□□□□□ -1.13
SCN3A-210ENST00000640652 CTTNBP2Q8WZ74 1663 aa7.99□□□□□ -1.13
SCN3A-210ENST00000640652 ATAD2BQ9ULI0 1458 aa7.99□□□□□ -1.13
SCN3A-210ENST00000640652 RAPGEF2Q9Y4G8 1499 aa7.97□□□□□ -1.13
SCN3A-210ENST00000640652 NEUROD1Q13562 356 aa7.95□□□□□ -1.14
SCN3A-210ENST00000640652 ATP1B4Q9UN42 357 aaPredicted RBP7.95□□□□□ -1.14
SCN3A-210ENST00000640652 FHAD1B1AJZ9 1412 aa7.95□□□□□ -1.14
SCN3A-210ENST00000640652 KIF21AQ7Z4S6 1674 aa7.94□□□□□ -1.14
SCN3A-210ENST00000640652 CFAP43Q8NDM7 1665 aa7.93□□□□□ -1.14
SCN3A-210ENST00000640652 ITGAEP38570 1179 aa7.92□□□□□ -1.14
SCN3A-210ENST00000640652 RUSC2Q8N2Y8 1516 aa7.92□□□□□ -1.14
SCN3A-210ENST00000640652 CUL7Q14999 1698 aa7.92□□□□□ -1.14
SCN3A-210ENST00000640652 CCNB3Q8WWL7 1395 aa7.9□□□□□ -1.15
SCN3A-210ENST00000640652 FAM50AQ14320 339 aaKnown RBP7.89□□□□□ -1.15
SCN3A-210ENST00000640652 CC2D2AQ9P2K1 1620 aa7.88□□□□□ -1.15
SCN3A-210ENST00000640652 SUPT6HQ7KZ85 1726 aaKnown RBP7.88□□□□□ -1.15
SCN3A-210ENST00000640652 TIAM1Q13009 1591 aa7.86□□□□□ -1.15
SCN3A-210ENST00000640652 ARHGAP35Q9NRY4 1499 aa7.86□□□□□ -1.15
SCN3A-210ENST00000640652 CUX2O14529 1486 aa7.85□□□□□ -1.15
SCN3A-210ENST00000640652 EFCAB5A4FU69 1503 aa7.85□□□□□ -1.15
SCN3A-210ENST00000640652 CUX1P39880 1505 aa7.84□□□□□ -1.15
SCN3A-210ENST00000640652 MIER1Q8N108 512 aa7.84□□□□□ -1.15
SCN3A-210ENST00000640652 ANP32CO43423 234 aa7.84□□□□□ -1.15
SCN3A-210ENST00000640652 NCAPD3P42695 1498 aa7.83□□□□□ -1.16
SCN3A-210ENST00000640652 ERICH6Q7L0X2 663 aa7.83□□□□□ -1.16
SCN3A-210ENST00000640652 TONSLQ96HA7 1378 aa7.83□□□□□ -1.16
SCN3A-210ENST00000640652 ARAP1Q96P48 1450 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms