RNA–Protein interactions for RNA: ENST00000640552.1

GFAP-237, Transcript of glial fibrillary acidic protein, humanhuman

TSL 5

Gene GFAP, Length 3,573 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GFAP-237ENST00000640552 NISCHQ9Y2I1 1504 aa28.65■■■□□ 2.18
GFAP-237ENST00000640552 SHROOM4Q9ULL8 1493 aa25.32■■□□□ 1.64
GFAP-237ENST00000640552 DCAF8L2P0C7V8 631 aa25.28■■□□□ 1.64
GFAP-237ENST00000640552 SUPT5HO00267 1087 aaKnown RBP24.83■■□□□ 1.56
GFAP-237ENST00000640552 ZCCHC6Q5VYS8 1495 aaKnown RBP24.06■■□□□ 1.44
GFAP-237ENST00000640552 CCDC180Q9P1Z9 1646 aa24.01■■□□□ 1.43
GFAP-237ENST00000640552 CHIC1Q5VXU3 224 aa23.48■■□□□ 1.35
GFAP-237ENST00000640552 ABCC9O60706 1549 aa23.47■■□□□ 1.35
GFAP-237ENST00000640552 EHMT2Q96KQ7 1210 aa23.29■■□□□ 1.32
GFAP-237ENST00000640552 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
GFAP-237ENST00000640552 LOC105371045A0A1W2PR82 267 aa23.14■■□□□ 1.3
GFAP-237ENST00000640552 FAM9AQ8IZU1 332 aaPredicted RBP23.12■■□□□ 1.29
GFAP-237ENST00000640552 MYO15BQ96JP2 1530 aa23.1■■□□□ 1.29
GFAP-237ENST00000640552 DCAF1Q9Y4B6 1507 aa23.06■■□□□ 1.28
GFAP-237ENST00000640552 PCGF6Q9BYE7 350 aa22.98■■□□□ 1.27
GFAP-237ENST00000640552 TRIM41Q8WV44 630 aa22.9■■□□□ 1.26
GFAP-237ENST00000640552 RSF1Q96T23 1441 aaPredicted RBP22.76■■□□□ 1.23
GFAP-237ENST00000640552 PABPN1Q86U42 306 aaKnown RBP eCLIP22.73■■□□□ 1.23
GFAP-237ENST00000640552 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
GFAP-237ENST00000640552 NACADO15069 1562 aa22.53■■□□□ 1.2
GFAP-237ENST00000640552 PPARGC1BQ86YN6 1023 aaKnown RBP22.5■■□□□ 1.19
GFAP-237ENST00000640552 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
GFAP-237ENST00000640552 MROH2BQ7Z745 1585 aa22.42■■□□□ 1.18
GFAP-237ENST00000640552 TTBK1Q5TCY1 1321 aaPredicted RBP22.4■■□□□ 1.18
GFAP-237ENST00000640552 HRCP23327 699 aa22.35■■□□□ 1.17
GFAP-237ENST00000640552 WIZO95785 1651 aa22.26■■□□□ 1.15
GFAP-237ENST00000640552 TRIM26Q12899 539 aaPredicted RBP22.19■■□□□ 1.14
GFAP-237ENST00000640552 RANGAP1P46060 587 aaPredicted RBP22.12■■□□□ 1.13
GFAP-237ENST00000640552 UBTFP17480 764 aaKnown RBP22.04■■□□□ 1.12
GFAP-237ENST00000640552 BAZ1AQ9NRL2 1556 aaPredicted RBP22.02■■□□□ 1.12
GFAP-237ENST00000640552 ABCC8Q09428 1581 aa21.89■■□□□ 1.1
GFAP-237ENST00000640552 CCDC88BA6NC98 1476 aa21.88■■□□□ 1.09
GFAP-237ENST00000640552 SMARCA4P51532 1647 aa21.81■■□□□ 1.08
GFAP-237ENST00000640552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.73■■□□□ 1.07
GFAP-237ENST00000640552 UNC13AQ9UPW8 1703 aa21.73■■□□□ 1.07
GFAP-237ENST00000640552 SOGA1O94964 1423 aa21.72■■□□□ 1.07
GFAP-237ENST00000640552 CSRNP3Q8WYN3 585 aa21.72■■□□□ 1.07
GFAP-237ENST00000640552 TOP2AP11388 1531 aaKnown RBP21.71■■□□□ 1.07
GFAP-237ENST00000640552 CCER1Q8TC90 406 aaPredicted RBP21.68■■□□□ 1.06
GFAP-237ENST00000640552 SMARCA2P51531 1590 aa21.62■■□□□ 1.05
GFAP-237ENST00000640552 BICRAQ9NZM4 1560 aa21.6■■□□□ 1.05
GFAP-237ENST00000640552 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
GFAP-237ENST00000640552 BAZ1BQ9UIG0 1483 aaKnown RBP21.56■■□□□ 1.04
GFAP-237ENST00000640552 WRNQ14191 1432 aaPredicted RBP eCLIP21.53■■□□□ 1.04
GFAP-237ENST00000640552 APLP2Q06481 763 aa21.52■■□□□ 1.03
GFAP-237ENST00000640552 ZEB1P37275 1124 aaPredicted RBP21.51■■□□□ 1.03
GFAP-237ENST00000640552 ATAD2BQ9ULI0 1458 aa21.47■■□□□ 1.03
GFAP-237ENST00000640552 HNRNPUL2Q1KMD3 747 aaKnown RBP21.47■■□□□ 1.03
GFAP-237ENST00000640552 CEP162Q5TB80 1403 aa21.46■■□□□ 1.03
GFAP-237ENST00000640552 EIF4G1Q04637 1599 aaKnown RBP21.32■■□□□ 1
GFAP-237ENST00000640552 TNIKQ9UKE5 1360 aa21.29■■□□□ 1
GFAP-237ENST00000640552 ATP1B4Q9UN42 357 aaPredicted RBP21.27■□□□□ 0.99
GFAP-237ENST00000640552 GOLGA3Q08378 1498 aa21.24■□□□□ 0.99
GFAP-237ENST00000640552 ITGAEP38570 1179 aa21.2■□□□□ 0.98
GFAP-237ENST00000640552 SYNJ1O43426 1573 aa21.2■□□□□ 0.98
GFAP-237ENST00000640552 EEA1Q15075 1411 aa21.19■□□□□ 0.98
GFAP-237ENST00000640552 CLIP1P30622 1438 aa21.18■□□□□ 0.98
GFAP-237ENST00000640552 RAPGEF2Q9Y4G8 1499 aa21.11■□□□□ 0.97
GFAP-237ENST00000640552 P3H3Q8IVL6 736 aa21.11■□□□□ 0.97
GFAP-237ENST00000640552 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
GFAP-237ENST00000640552 PEG3Q9GZU2 1588 aa21.05■□□□□ 0.96
GFAP-237ENST00000640552 NCAPD3P42695 1498 aa20.96■□□□□ 0.95
GFAP-237ENST00000640552 DIEXFQ68CQ4 756 aaKnown RBP20.93■□□□□ 0.94
GFAP-237ENST00000640552 KANK4Q5T7N3 995 aaPredicted RBP20.91■□□□□ 0.94
GFAP-237ENST00000640552 KIF27Q86VH2 1401 aa20.9■□□□□ 0.94
GFAP-237ENST00000640552 YTHDC1Q96MU7 727 aaKnown RBP20.9■□□□□ 0.94
GFAP-237ENST00000640552 VPS8Q8N3P4 1428 aa20.86■□□□□ 0.93
GFAP-237ENST00000640552 CUX2O14529 1486 aa20.86■□□□□ 0.93
GFAP-237ENST00000640552 DNAJC5BQ9UF47 199 aa20.84■□□□□ 0.93
GFAP-237ENST00000640552 CUX1P39880 1505 aa20.82■□□□□ 0.92
GFAP-237ENST00000640552 CADPSQ9ULU8 1353 aa20.81■□□□□ 0.92
GFAP-237ENST00000640552 TOP2BQ02880 1626 aa20.8■□□□□ 0.92
GFAP-237ENST00000640552 FAM50AQ14320 339 aaKnown RBP20.78■□□□□ 0.92
GFAP-237ENST00000640552 CFTRP13569 1480 aa20.77■□□□□ 0.92
GFAP-237ENST00000640552 HMGXB3Q12766 1538 aa20.75■□□□□ 0.91
GFAP-237ENST00000640552 KIF21BO75037 1637 aa20.74■□□□□ 0.91
GFAP-237ENST00000640552 ARID3CA6NKF2 412 aa20.72■□□□□ 0.91
GFAP-237ENST00000640552 CARMIL1Q5VZK9 1371 aa20.71■□□□□ 0.91
GFAP-237ENST00000640552 ZNF316A6NFI3 1004 aaPredicted RBP20.7■□□□□ 0.9
GFAP-237ENST00000640552 NESP48681 1621 aa20.7■□□□□ 0.9
GFAP-237ENST00000640552 CC2D2AQ9P2K1 1620 aa20.69■□□□□ 0.9
GFAP-237ENST00000640552 IGF1RP08069 1367 aa20.66■□□□□ 0.9
GFAP-237ENST00000640552 PRXQ9BXM0 1461 aa20.65■□□□□ 0.9
GFAP-237ENST00000640552 FGD5Q6ZNL6 1462 aa20.64■□□□□ 0.9
GFAP-237ENST00000640552 ARAP1Q96P48 1450 aa20.64■□□□□ 0.89
GFAP-237ENST00000640552 RAD54L2Q9Y4B4 1467 aa20.63■□□□□ 0.89
GFAP-237ENST00000640552 FANCD2Q9BXW9 1451 aa20.62■□□□□ 0.89
GFAP-237ENST00000640552 TDRD9Q8NDG6 1382 aaKnown RBP20.6■□□□□ 0.89
GFAP-237ENST00000640552 NEUROD1Q13562 356 aa20.59■□□□□ 0.89
GFAP-237ENST00000640552 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
GFAP-237ENST00000640552 BIVM-ERCC5R4GMW8 1640 aa20.56■□□□□ 0.88
GFAP-237ENST00000640552 CENPBP07199 599 aaPredicted RBP20.54■□□□□ 0.88
GFAP-237ENST00000640552 ARHGAP35Q9NRY4 1499 aa20.5■□□□□ 0.87
GFAP-237ENST00000640552 MIER1Q8N108 512 aa20.5■□□□□ 0.87
GFAP-237ENST00000640552 ERICH3Q5RHP9 1530 aa20.47■□□□□ 0.87
GFAP-237ENST00000640552 FHOD3Q2V2M9 1422 aa20.47■□□□□ 0.87
GFAP-237ENST00000640552 CCNB3Q8WWL7 1395 aa20.45■□□□□ 0.86
GFAP-237ENST00000640552 FBLN2P98095 1184 aa20.44■□□□□ 0.86
GFAP-237ENST00000640552 ACIN1Q9UKV3 1341 aaKnown RBP20.43■□□□□ 0.86
GFAP-237ENST00000640552 GTF3C3Q9Y5Q9 886 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms