RNA–Protein interactions for RNA: ENST00000638454.1

PRAMEF13-202, Transcript of PRAME family member 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRAMEF13, Length 1,331 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF13-202ENST00000638454 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
PRAMEF13-202ENST00000638454 AEBP2Q6ZN18 517 aaPredicted RBP24.76■■□□□ 1.55
PRAMEF13-202ENST00000638454 NISCHQ9Y2I1 1504 aa24.03■■□□□ 1.44
PRAMEF13-202ENST00000638454 PHF23Q9BUL5 403 aaPredicted RBP22.36■■□□□ 1.17
PRAMEF13-202ENST00000638454 CCDC180Q9P1Z9 1646 aa21.09■□□□□ 0.97
PRAMEF13-202ENST00000638454 PLPPR3Q6T4P5 718 aa20.95■□□□□ 0.94
PRAMEF13-202ENST00000638454 SENP3Q9H4L4 574 aaPredicted RBP20.73■□□□□ 0.91
PRAMEF13-202ENST00000638454 ZCCHC6Q5VYS8 1495 aaKnown RBP20.17■□□□□ 0.82
PRAMEF13-202ENST00000638454 DCAF1Q9Y4B6 1507 aa19.95■□□□□ 0.78
PRAMEF13-202ENST00000638454 ABCC9O60706 1549 aa19.92■□□□□ 0.78
PRAMEF13-202ENST00000638454 DCAF8L2P0C7V8 631 aa19.88■□□□□ 0.77
PRAMEF13-202ENST00000638454 MYO15BQ96JP2 1530 aa19.78■□□□□ 0.76
PRAMEF13-202ENST00000638454 ADRA2BP18089 450 aa19.69■□□□□ 0.74
PRAMEF13-202ENST00000638454 NACADO15069 1562 aa19.68■□□□□ 0.74
PRAMEF13-202ENST00000638454 EHMT2Q96KQ7 1210 aa19.58■□□□□ 0.73
PRAMEF13-202ENST00000638454 RB1CC1Q8TDY2 1594 aa19.54■□□□□ 0.72
PRAMEF13-202ENST00000638454 KCNA4P22459 653 aa19.53■□□□□ 0.72
PRAMEF13-202ENST00000638454 SHROOM4Q9ULL8 1493 aa19.43■□□□□ 0.7
PRAMEF13-202ENST00000638454 PPP6R1Q9UPN7 881 aa19.37■□□□□ 0.69
PRAMEF13-202ENST00000638454 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
PRAMEF13-202ENST00000638454 FOXD1Q16676 465 aa19.17■□□□□ 0.66
PRAMEF13-202ENST00000638454 UNC13AQ9UPW8 1703 aa18.97■□□□□ 0.63
PRAMEF13-202ENST00000638454 CSRNP3Q8WYN3 585 aa18.82■□□□□ 0.6
PRAMEF13-202ENST00000638454 BICRAQ9NZM4 1560 aa18.78■□□□□ 0.6
PRAMEF13-202ENST00000638454 SLC4A1APQ9BWU0 796 aaKnown RBP18.76■□□□□ 0.59
PRAMEF13-202ENST00000638454 PABPN1Q86U42 306 aaKnown RBP eCLIP18.72■□□□□ 0.59
PRAMEF13-202ENST00000638454 SUPT5HO00267 1087 aaKnown RBP18.71■□□□□ 0.59
PRAMEF13-202ENST00000638454 BAZ1AQ9NRL2 1556 aaPredicted RBP18.64■□□□□ 0.57
PRAMEF13-202ENST00000638454 PPP4R3CPQ6ZMV5 832 aa18.64■□□□□ 0.57
PRAMEF13-202ENST00000638454 CECR2Q9BXF3 1484 aa18.57■□□□□ 0.56
PRAMEF13-202ENST00000638454 RSF1Q96T23 1441 aaPredicted RBP18.56■□□□□ 0.56
PRAMEF13-202ENST00000638454 SMARCA4P51532 1647 aa18.51■□□□□ 0.55
PRAMEF13-202ENST00000638454 MROH2BQ7Z745 1585 aa18.49■□□□□ 0.55
PRAMEF13-202ENST00000638454 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
PRAMEF13-202ENST00000638454 WIZO95785 1651 aa18.33■□□□□ 0.53
PRAMEF13-202ENST00000638454 PIAS4Q8N2W9 510 aaPredicted RBP18.33■□□□□ 0.53
PRAMEF13-202ENST00000638454 SMARCA2P51531 1590 aa18.31■□□□□ 0.52
PRAMEF13-202ENST00000638454 EIF4G1Q04637 1599 aaKnown RBP18.31■□□□□ 0.52
PRAMEF13-202ENST00000638454 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
PRAMEF13-202ENST00000638454 TOP2AP11388 1531 aaKnown RBP18.25■□□□□ 0.51
PRAMEF13-202ENST00000638454 NPM3O75607 178 aaKnown RBP18.23■□□□□ 0.51
PRAMEF13-202ENST00000638454 ATAD2BQ9ULI0 1458 aa18.22■□□□□ 0.51
PRAMEF13-202ENST00000638454 BAZ1BQ9UIG0 1483 aaKnown RBP18.17■□□□□ 0.5
PRAMEF13-202ENST00000638454 HMGXB3Q12766 1538 aa18.12■□□□□ 0.49
PRAMEF13-202ENST00000638454 NCAPD3P42695 1498 aa18.11■□□□□ 0.49
PRAMEF13-202ENST00000638454 CC2D2AQ9P2K1 1620 aa18.04■□□□□ 0.48
PRAMEF13-202ENST00000638454 ZBTB22O15209 634 aa18.02■□□□□ 0.48
PRAMEF13-202ENST00000638454 CCDC88BA6NC98 1476 aa17.99■□□□□ 0.47
PRAMEF13-202ENST00000638454 CNKSR2Q8WXI2 1034 aa17.83■□□□□ 0.44
PRAMEF13-202ENST00000638454 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
PRAMEF13-202ENST00000638454 CFTRP13569 1480 aa17.67■□□□□ 0.42
PRAMEF13-202ENST00000638454 CADPSQ9ULU8 1353 aa17.64■□□□□ 0.41
PRAMEF13-202ENST00000638454 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
PRAMEF13-202ENST00000638454 PRDM2Q13029 1718 aa17.61■□□□□ 0.41
PRAMEF13-202ENST00000638454 FOXD4L1Q9NU39 408 aa17.6■□□□□ 0.41
PRAMEF13-202ENST00000638454 SLC24A1O60721 1099 aa17.57■□□□□ 0.4
PRAMEF13-202ENST00000638454 LAMC3Q9Y6N6 1575 aa17.56■□□□□ 0.4
PRAMEF13-202ENST00000638454 WRNQ14191 1432 aaPredicted RBP eCLIP17.56■□□□□ 0.4
PRAMEF13-202ENST00000638454 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
PRAMEF13-202ENST00000638454 DNAJC5BQ9UF47 199 aa17.5■□□□□ 0.39
PRAMEF13-202ENST00000638454 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
PRAMEF13-202ENST00000638454 RTN4Q9NQC3 1192 aaKnown RBP17.46■□□□□ 0.38
PRAMEF13-202ENST00000638454 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
PRAMEF13-202ENST00000638454 TOP2BQ02880 1626 aa17.4■□□□□ 0.38
PRAMEF13-202ENST00000638454 NESP48681 1621 aa17.4■□□□□ 0.38
PRAMEF13-202ENST00000638454 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.37
PRAMEF13-202ENST00000638454 SYNJ1O43426 1573 aa17.39■□□□□ 0.37
PRAMEF13-202ENST00000638454 CEP164Q9UPV0 1460 aa17.38■□□□□ 0.37
PRAMEF13-202ENST00000638454 AMER1Q5JTC6 1135 aaPredicted RBP17.37■□□□□ 0.37
PRAMEF13-202ENST00000638454 EEA1Q15075 1411 aa17.35■□□□□ 0.37
PRAMEF13-202ENST00000638454 CUX1P39880 1505 aa17.32■□□□□ 0.36
PRAMEF13-202ENST00000638454 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
PRAMEF13-202ENST00000638454 MAPK8IP2Q13387 824 aaPredicted RBP17.28■□□□□ 0.36
PRAMEF13-202ENST00000638454 FAM9AQ8IZU1 332 aaPredicted RBP17.24■□□□□ 0.35
PRAMEF13-202ENST00000638454 KIF21AQ7Z4S6 1674 aa17.24■□□□□ 0.35
PRAMEF13-202ENST00000638454 TOPBP1Q92547 1522 aa17.22■□□□□ 0.35
PRAMEF13-202ENST00000638454 ERCC6Q03468 1493 aa17.21■□□□□ 0.35
PRAMEF13-202ENST00000638454 RNF216Q9NWF9 866 aaPredicted RBP17.21■□□□□ 0.34
PRAMEF13-202ENST00000638454 FGD5Q6ZNL6 1462 aa17.19■□□□□ 0.34
PRAMEF13-202ENST00000638454 MRC2Q9UBG0 1479 aa17.19■□□□□ 0.34
PRAMEF13-202ENST00000638454 SOGA1O94964 1423 aa17.19■□□□□ 0.34
PRAMEF13-202ENST00000638454 KIF27Q86VH2 1401 aa17.17■□□□□ 0.34
PRAMEF13-202ENST00000638454 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
PRAMEF13-202ENST00000638454 MSH5O43196 834 aa17.15■□□□□ 0.34
PRAMEF13-202ENST00000638454 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
PRAMEF13-202ENST00000638454 CUX2O14529 1486 aa17.08■□□□□ 0.33
PRAMEF13-202ENST00000638454 WDR62O43379 1518 aa17.08■□□□□ 0.32
PRAMEF13-202ENST00000638454 ABCA10Q8WWZ4 1543 aa17.07■□□□□ 0.32
PRAMEF13-202ENST00000638454 RUSC2Q8N2Y8 1516 aa17.06■□□□□ 0.32
PRAMEF13-202ENST00000638454 LOC105371045A0A1W2PR82 267 aa17.06■□□□□ 0.32
PRAMEF13-202ENST00000638454 GOLGA3Q08378 1498 aa17.04■□□□□ 0.32
PRAMEF13-202ENST00000638454 KIF21BO75037 1637 aa17.04■□□□□ 0.32
PRAMEF13-202ENST00000638454 RAD54L2Q9Y4B4 1467 aa17.01■□□□□ 0.31
PRAMEF13-202ENST00000638454 THOC2Q8NI27 1593 aaKnown RBP17.01■□□□□ 0.31
PRAMEF13-202ENST00000638454 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
PRAMEF13-202ENST00000638454 ERICH3Q5RHP9 1530 aa16.98■□□□□ 0.31
PRAMEF13-202ENST00000638454 WDR97A6NE52 1622 aa16.97■□□□□ 0.31
PRAMEF13-202ENST00000638454 SLC4A2P04920 1241 aa16.96■□□□□ 0.3
PRAMEF13-202ENST00000638454 UBTFP17480 764 aaKnown RBP16.96■□□□□ 0.3
PRAMEF13-202ENST00000638454 FKBP8Q14318 412 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms