RNA–Protein interactions for RNA: ENST00000624909.1

PCDHB9-203, Transcript of protocadherin beta 9, humanhuman

TSL 3

Gene PCDHB9, Length 616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB9-203ENST00000624909 AEBP2Q6ZN18 517 aaPredicted RBP22.38■■□□□ 1.17
PCDHB9-203ENST00000624909 CHIC1Q5VXU3 224 aa22.21■■□□□ 1.15
PCDHB9-203ENST00000624909 PHF23Q9BUL5 403 aaPredicted RBP19.52■□□□□ 0.72
PCDHB9-203ENST00000624909 NISCHQ9Y2I1 1504 aa19.25■□□□□ 0.67
PCDHB9-203ENST00000624909 SENP3Q9H4L4 574 aaPredicted RBP19.03■□□□□ 0.64
PCDHB9-203ENST00000624909 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
PCDHB9-203ENST00000624909 FOXD1Q16676 465 aa17.57■□□□□ 0.4
PCDHB9-203ENST00000624909 ADRA2BP18089 450 aa17.13■□□□□ 0.33
PCDHB9-203ENST00000624909 PPP6R1Q9UPN7 881 aa17.11■□□□□ 0.33
PCDHB9-203ENST00000624909 CCDC180Q9P1Z9 1646 aa17.07■□□□□ 0.32
PCDHB9-203ENST00000624909 POTEDQ86YR6 584 aa16.87■□□□□ 0.29
PCDHB9-203ENST00000624909 PIAS4Q8N2W9 510 aaPredicted RBP16.67■□□□□ 0.26
PCDHB9-203ENST00000624909 ABCC9O60706 1549 aa16.45■□□□□ 0.22
PCDHB9-203ENST00000624909 MSH5O43196 834 aa16.14■□□□□ 0.17
PCDHB9-203ENST00000624909 MYO15BQ96JP2 1530 aa16.09■□□□□ 0.17
PCDHB9-203ENST00000624909 ZCCHC6Q5VYS8 1495 aaKnown RBP16.06■□□□□ 0.16
PCDHB9-203ENST00000624909 NACADO15069 1562 aa16.05■□□□□ 0.16
PCDHB9-203ENST00000624909 PPP4R3CPQ6ZMV5 832 aa16.05■□□□□ 0.16
PCDHB9-203ENST00000624909 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
PCDHB9-203ENST00000624909 RB1CC1Q8TDY2 1594 aa16■□□□□ 0.15
PCDHB9-203ENST00000624909 KCNA4P22459 653 aa15.99■□□□□ 0.15
PCDHB9-203ENST00000624909 DCAF8L2P0C7V8 631 aa15.95■□□□□ 0.14
PCDHB9-203ENST00000624909 NCBP3Q53F19 620 aaKnown RBP15.77■□□□□ 0.12
PCDHB9-203ENST00000624909 SCAF1Q9H7N4 1312 aaKnown RBP15.76■□□□□ 0.11
PCDHB9-203ENST00000624909 CNKSR2Q8WXI2 1034 aa15.56■□□□□ 0.08
PCDHB9-203ENST00000624909 SHROOM4Q9ULL8 1493 aa15.49■□□□□ 0.07
PCDHB9-203ENST00000624909 UNC13AQ9UPW8 1703 aa15.48■□□□□ 0.07
PCDHB9-203ENST00000624909 NPM3O75607 178 aaKnown RBP15.47■□□□□ 0.07
PCDHB9-203ENST00000624909 SCRIBQ14160 1630 aa15.46■□□□□ 0.06
PCDHB9-203ENST00000624909 MAPK8IP2Q13387 824 aaPredicted RBP15.43■□□□□ 0.06
PCDHB9-203ENST00000624909 BICRAQ9NZM4 1560 aa15.42■□□□□ 0.06
PCDHB9-203ENST00000624909 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
PCDHB9-203ENST00000624909 SLC4A1APQ9BWU0 796 aaKnown RBP15.31■□□□□ 0.04
PCDHB9-203ENST00000624909 DMRT2Q9Y5R5 561 aa15.21■□□□□ 0.03
PCDHB9-203ENST00000624909 EHMT2Q96KQ7 1210 aa15.19■□□□□ 0.02
PCDHB9-203ENST00000624909 RNF216Q9NWF9 866 aaPredicted RBP15.17■□□□□ 0.02
PCDHB9-203ENST00000624909 EIF4G1Q04637 1599 aaKnown RBP15.04■□□□□ -0
PCDHB9-203ENST00000624909 DNAJC5BQ9UF47 199 aa15.03■□□□□ -0
PCDHB9-203ENST00000624909 HOXD11P31277 338 aaPredicted RBP15.02■□□□□ -0
PCDHB9-203ENST00000624909 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
PCDHB9-203ENST00000624909 CC2D2AQ9P2K1 1620 aa14.91□□□□□ -0.02
PCDHB9-203ENST00000624909 CECR2Q9BXF3 1484 aa14.89□□□□□ -0.03
PCDHB9-203ENST00000624909 CSRNP3Q8WYN3 585 aa14.88□□□□□ -0.03
PCDHB9-203ENST00000624909 SMARCA4P51532 1647 aa14.87□□□□□ -0.03
PCDHB9-203ENST00000624909 SMARCA2P51531 1590 aa14.82□□□□□ -0.04
PCDHB9-203ENST00000624909 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
PCDHB9-203ENST00000624909 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
PCDHB9-203ENST00000624909 ATAD2BQ9ULI0 1458 aa14.79□□□□□ -0.04
PCDHB9-203ENST00000624909 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.05
PCDHB9-203ENST00000624909 HMGXB3Q12766 1538 aa14.73□□□□□ -0.05
PCDHB9-203ENST00000624909 RSF1Q96T23 1441 aaPredicted RBP14.71□□□□□ -0.05
PCDHB9-203ENST00000624909 ZBTB22O15209 634 aa14.69□□□□□ -0.06
PCDHB9-203ENST00000624909 BAZ1BQ9UIG0 1483 aaKnown RBP14.68□□□□□ -0.06
PCDHB9-203ENST00000624909 FOXD4L1Q9NU39 408 aa14.67□□□□□ -0.06
PCDHB9-203ENST00000624909 WIZO95785 1651 aa14.58□□□□□ -0.08
PCDHB9-203ENST00000624909 DCAF8L1A6NGE4 600 aa14.53□□□□□ -0.08
PCDHB9-203ENST00000624909 TOP2AP11388 1531 aaKnown RBP14.52□□□□□ -0.08
PCDHB9-203ENST00000624909 SLC4A2P04920 1241 aa14.52□□□□□ -0.09
PCDHB9-203ENST00000624909 SUPT5HO00267 1087 aaKnown RBP14.38□□□□□ -0.11
PCDHB9-203ENST00000624909 LAMC3Q9Y6N6 1575 aa14.38□□□□□ -0.11
PCDHB9-203ENST00000624909 CADPSQ9ULU8 1353 aa14.37□□□□□ -0.11
PCDHB9-203ENST00000624909 CCDC88BA6NC98 1476 aa14.34□□□□□ -0.11
PCDHB9-203ENST00000624909 MYCNP04198 464 aaPredicted RBP14.34□□□□□ -0.11
PCDHB9-203ENST00000624909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.33□□□□□ -0.12
PCDHB9-203ENST00000624909 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
PCDHB9-203ENST00000624909 CFTRP13569 1480 aa14.31□□□□□ -0.12
PCDHB9-203ENST00000624909 NESP48681 1621 aa14.25□□□□□ -0.13
PCDHB9-203ENST00000624909 ERCC6Q03468 1493 aa14.24□□□□□ -0.13
PCDHB9-203ENST00000624909 CACNB1Q02641 598 aaPredicted RBP14.21□□□□□ -0.13
PCDHB9-203ENST00000624909 FANCD2Q9BXW9 1451 aa14.17□□□□□ -0.14
PCDHB9-203ENST00000624909 ATXN8OSP0DMR3 200 aa14.16□□□□□ -0.14
PCDHB9-203ENST00000624909 CEP164Q9UPV0 1460 aa14.14□□□□□ -0.15
PCDHB9-203ENST00000624909 PRDM2Q13029 1718 aa14.13□□□□□ -0.15
PCDHB9-203ENST00000624909 CUX2O14529 1486 aa14.11□□□□□ -0.15
PCDHB9-203ENST00000624909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.1□□□□□ -0.15
PCDHB9-203ENST00000624909 HNRNPUL2Q1KMD3 747 aaKnown RBP14.1□□□□□ -0.15
PCDHB9-203ENST00000624909 U3KPZ7 1027 aaPredicted RBP14.1□□□□□ -0.15
PCDHB9-203ENST00000624909 MRC2Q9UBG0 1479 aa14.09□□□□□ -0.15
PCDHB9-203ENST00000624909 ABCC8Q09428 1581 aa14.09□□□□□ -0.15
PCDHB9-203ENST00000624909 KIF21AQ7Z4S6 1674 aa14.08□□□□□ -0.16
PCDHB9-203ENST00000624909 SAMD1Q6SPF0 538 aaPredicted RBP14.05□□□□□ -0.16
PCDHB9-203ENST00000624909 THOC2Q8NI27 1593 aaKnown RBP14.05□□□□□ -0.16
PCDHB9-203ENST00000624909 WDR62O43379 1518 aa14.04□□□□□ -0.16
PCDHB9-203ENST00000624909 URB2Q14146 1524 aaKnown RBP13.97□□□□□ -0.17
PCDHB9-203ENST00000624909 DNMBPQ6XZF7 1577 aa13.95□□□□□ -0.18
PCDHB9-203ENST00000624909 TOPBP1Q92547 1522 aa13.94□□□□□ -0.18
PCDHB9-203ENST00000624909 APLP2Q06481 763 aa13.9□□□□□ -0.18
PCDHB9-203ENST00000624909 WRNQ14191 1432 aaPredicted RBP eCLIP13.89□□□□□ -0.19
PCDHB9-203ENST00000624909 IFT140Q96RY7 1462 aa13.88□□□□□ -0.19
PCDHB9-203ENST00000624909 CUX1P39880 1505 aa13.85□□□□□ -0.19
PCDHB9-203ENST00000624909 ATF5Q9Y2D1 282 aaPredicted RBP13.85□□□□□ -0.19
PCDHB9-203ENST00000624909 POLA1P09884 1462 aaPredicted RBP13.83□□□□□ -0.2
PCDHB9-203ENST00000624909 TOP2BQ02880 1626 aa13.82□□□□□ -0.2
PCDHB9-203ENST00000624909 RNF39Q9H2S5 420 aa13.82□□□□□ -0.2
PCDHB9-203ENST00000624909 SOGA1O94964 1423 aa13.81□□□□□ -0.2
PCDHB9-203ENST00000624909 BIVM-ERCC5R4GMW8 1640 aa13.8□□□□□ -0.2
PCDHB9-203ENST00000624909 FGD5Q6ZNL6 1462 aa13.8□□□□□ -0.2
PCDHB9-203ENST00000624909 WDR97A6NE52 1622 aa13.79□□□□□ -0.2
PCDHB9-203ENST00000624909 TARBP1Q13395 1621 aaKnown RBP13.76□□□□□ -0.21
PCDHB9-203ENST00000624909 SYNJ1O43426 1573 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms