RNA–Protein interactions for RNA: ENST00000624403.1

ATRX-216, Transcript of ATRX, chromatin remodeler, humanhuman

TSL 3

Gene ATRX, Length 583 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATRX-216ENST00000624403 AEBP2Q6ZN18 517 aaPredicted RBP28.53■■■□□ 2.16
ATRX-216ENST00000624403 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
ATRX-216ENST00000624403 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.46
ATRX-216ENST00000624403 PHF23Q9BUL5 403 aaPredicted RBP24.06■■□□□ 1.44
ATRX-216ENST00000624403 NISCHQ9Y2I1 1504 aa23.39■■□□□ 1.34
ATRX-216ENST00000624403 FOXD1Q16676 465 aa22.57■■□□□ 1.2
ATRX-216ENST00000624403 PLPPR3Q6T4P5 718 aa21.98■■□□□ 1.11
ATRX-216ENST00000624403 PPP6R1Q9UPN7 881 aa21.41■■□□□ 1.02
ATRX-216ENST00000624403 ADRA2BP18089 450 aa21.35■■□□□ 1.01
ATRX-216ENST00000624403 PIAS4Q8N2W9 510 aaPredicted RBP21.16■□□□□ 0.98
ATRX-216ENST00000624403 POTEDQ86YR6 584 aa21.04■□□□□ 0.96
ATRX-216ENST00000624403 MSH5O43196 834 aa20.93■□□□□ 0.94
ATRX-216ENST00000624403 CCDC180Q9P1Z9 1646 aa20.36■□□□□ 0.85
ATRX-216ENST00000624403 ZCCHC6Q5VYS8 1495 aaKnown RBP19.65■□□□□ 0.74
ATRX-216ENST00000624403 MAPK8IP2Q13387 824 aaPredicted RBP19.53■□□□□ 0.72
ATRX-216ENST00000624403 SCAF1Q9H7N4 1312 aaKnown RBP19.43■□□□□ 0.7
ATRX-216ENST00000624403 PPP4R3CPQ6ZMV5 832 aa19.34■□□□□ 0.69
ATRX-216ENST00000624403 DCAF1Q9Y4B6 1507 aa19.33■□□□□ 0.68
ATRX-216ENST00000624403 DCAF8L2P0C7V8 631 aa19.32■□□□□ 0.68
ATRX-216ENST00000624403 ABCC9O60706 1549 aa19.3■□□□□ 0.68
ATRX-216ENST00000624403 DMRT2Q9Y5R5 561 aa19.26■□□□□ 0.67
ATRX-216ENST00000624403 SHROOM4Q9ULL8 1493 aa19.11■□□□□ 0.65
ATRX-216ENST00000624403 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
ATRX-216ENST00000624403 NACADO15069 1562 aa18.98■□□□□ 0.63
ATRX-216ENST00000624403 CNKSR2Q8WXI2 1034 aa18.87■□□□□ 0.61
ATRX-216ENST00000624403 RB1CC1Q8TDY2 1594 aa18.82■□□□□ 0.6
ATRX-216ENST00000624403 SCRIBQ14160 1630 aa18.76■□□□□ 0.59
ATRX-216ENST00000624403 HOXD11P31277 338 aaPredicted RBP18.66■□□□□ 0.58
ATRX-216ENST00000624403 NCBP3Q53F19 620 aaKnown RBP18.64■□□□□ 0.57
ATRX-216ENST00000624403 RNF216Q9NWF9 866 aaPredicted RBP18.61■□□□□ 0.57
ATRX-216ENST00000624403 DCAF8L1A6NGE4 600 aa18.5■□□□□ 0.55
ATRX-216ENST00000624403 NPM3O75607 178 aaKnown RBP18.44■□□□□ 0.54
ATRX-216ENST00000624403 UNC13AQ9UPW8 1703 aa18.4■□□□□ 0.54
ATRX-216ENST00000624403 KCNA4P22459 653 aa18.4■□□□□ 0.54
ATRX-216ENST00000624403 SUPT5HO00267 1087 aaKnown RBP18.37■□□□□ 0.53
ATRX-216ENST00000624403 BICRAQ9NZM4 1560 aa18.27■□□□□ 0.52
ATRX-216ENST00000624403 PABPN1Q86U42 306 aaKnown RBP eCLIP18.22■□□□□ 0.51
ATRX-216ENST00000624403 CECR2Q9BXF3 1484 aa18.2■□□□□ 0.5
ATRX-216ENST00000624403 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
ATRX-216ENST00000624403 CACNB1Q02641 598 aaPredicted RBP18.14■□□□□ 0.49
ATRX-216ENST00000624403 MROH2BQ7Z745 1585 aa18.08■□□□□ 0.49
ATRX-216ENST00000624403 BAZ1AQ9NRL2 1556 aaPredicted RBP18.04■□□□□ 0.48
ATRX-216ENST00000624403 SMARCA4P51532 1647 aa17.97■□□□□ 0.47
ATRX-216ENST00000624403 RNF39Q9H2S5 420 aa17.93■□□□□ 0.46
ATRX-216ENST00000624403 WIZO95785 1651 aa17.92■□□□□ 0.46
ATRX-216ENST00000624403 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
ATRX-216ENST00000624403 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.82■□□□□ 0.444e-6■□□□□ 8.4
ATRX-216ENST00000624403 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
ATRX-216ENST00000624403 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
ATRX-216ENST00000624403 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
ATRX-216ENST00000624403 ATAD2BQ9ULI0 1458 aa17.69■□□□□ 0.42
ATRX-216ENST00000624403 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
ATRX-216ENST00000624403 C1QBPQ07021 282 aaKnown RBP17.66■□□□□ 0.42
ATRX-216ENST00000624403 BAZ1BQ9UIG0 1483 aaKnown RBP17.58■□□□□ 0.41
ATRX-216ENST00000624403 CCDC88BA6NC98 1476 aa17.57■□□□□ 0.4
ATRX-216ENST00000624403 SLC4A2P04920 1241 aa17.54■□□□□ 0.4
ATRX-216ENST00000624403 NCAPD3P42695 1498 aa17.54■□□□□ 0.4
ATRX-216ENST00000624403 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
ATRX-216ENST00000624403 U3KPZ7 1027 aaPredicted RBP17.48■□□□□ 0.39
ATRX-216ENST00000624403 CC2D2AQ9P2K1 1620 aa17.44■□□□□ 0.38
ATRX-216ENST00000624403 SLC4A1APQ9BWU0 796 aaKnown RBP17.4■□□□□ 0.38
ATRX-216ENST00000624403 TRIM41Q8WV44 630 aa17.27■□□□□ 0.36
ATRX-216ENST00000624403 ABCC8Q09428 1581 aa17.19■□□□□ 0.34
ATRX-216ENST00000624403 SPINK5Q9NQ38 1064 aaPredicted RBP17.17■□□□□ 0.34
ATRX-216ENST00000624403 CFTRP13569 1480 aa17.14■□□□□ 0.33
ATRX-216ENST00000624403 CAPN15O75808 1086 aa17.09■□□□□ 0.33
ATRX-216ENST00000624403 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
ATRX-216ENST00000624403 WRNQ14191 1432 aaPredicted RBP eCLIP17.08■□□□□ 0.32
ATRX-216ENST00000624403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.32
ATRX-216ENST00000624403 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
ATRX-216ENST00000624403 SYNJ1O43426 1573 aa17.02■□□□□ 0.31
ATRX-216ENST00000624403 MYCNP04198 464 aaPredicted RBP17■□□□□ 0.31
ATRX-216ENST00000624403 PRDM2Q13029 1718 aa17■□□□□ 0.31
ATRX-216ENST00000624403 FOXD4L1Q9NU39 408 aa17■□□□□ 0.31
ATRX-216ENST00000624403 SAMD1Q6SPF0 538 aaPredicted RBP16.97■□□□□ 0.31
ATRX-216ENST00000624403 FAM9AQ8IZU1 332 aaPredicted RBP16.97■□□□□ 0.31
ATRX-216ENST00000624403 ZBTB22O15209 634 aa16.95■□□□□ 0.3
ATRX-216ENST00000624403 NESP48681 1621 aa16.95■□□□□ 0.3
ATRX-216ENST00000624403 TOP2BQ02880 1626 aa16.93■□□□□ 0.3
ATRX-216ENST00000624403 LOC105371045A0A1W2PR82 267 aa16.93■□□□□ 0.3
ATRX-216ENST00000624403 APLP2Q06481 763 aa16.92■□□□□ 0.3
ATRX-216ENST00000624403 CUX1P39880 1505 aa16.91■□□□□ 0.3
ATRX-216ENST00000624403 LAMC3Q9Y6N6 1575 aa16.91■□□□□ 0.3
ATRX-216ENST00000624403 TRHP20396 242 aaPredicted RBP16.91■□□□□ 0.3
ATRX-216ENST00000624403 DSG3P32926 999 aa16.91■□□□□ 0.3
ATRX-216ENST00000624403 BIVM-ERCC5R4GMW8 1640 aa16.91■□□□□ 0.3
ATRX-216ENST00000624403 FANCD2Q9BXW9 1451 aa16.9■□□□□ 0.3
ATRX-216ENST00000624403 SOGA1O94964 1423 aa16.89■□□□□ 0.29
ATRX-216ENST00000624403 EEA1Q15075 1411 aa16.83■□□□□ 0.28
ATRX-216ENST00000624403 RUSC2Q8N2Y8 1516 aa16.83■□□□□ 0.28
ATRX-216ENST00000624403 ZNF219Q9P2Y4 722 aaPredicted RBP16.82■□□□□ 0.28
ATRX-216ENST00000624403 PDS5BQ9NTI5 1447 aa16.8■□□□□ 0.28
ATRX-216ENST00000624403 CEP164Q9UPV0 1460 aa16.79■□□□□ 0.28
ATRX-216ENST00000624403 CSRNP3Q8WYN3 585 aa16.76■□□□□ 0.27
ATRX-216ENST00000624403 ABCB7O75027 752 aa16.75■□□□□ 0.27
ATRX-216ENST00000624403 DNMBPQ6XZF7 1577 aa16.74■□□□□ 0.27
ATRX-216ENST00000624403 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
ATRX-216ENST00000624403 TOPBP1Q92547 1522 aa16.72■□□□□ 0.27
ATRX-216ENST00000624403 FGD5Q6ZNL6 1462 aa16.72■□□□□ 0.27
ATRX-216ENST00000624403 KIF21AQ7Z4S6 1674 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms