RNA–Protein interactions for RNA: ENST00000622768.4

GRIA3-209, Transcript of glutamate ionotropic receptor AMPA type subunit 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene GRIA3, Length 5,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRIA3-209ENST00000622768 NISCHQ9Y2I1 1504 aa18.46■□□□□ 0.55
GRIA3-209ENST00000622768 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
GRIA3-209ENST00000622768 ABCC9O60706 1549 aa16.44■□□□□ 0.22
GRIA3-209ENST00000622768 CCDC180Q9P1Z9 1646 aa16.13■□□□□ 0.17
GRIA3-209ENST00000622768 RB1CC1Q8TDY2 1594 aa15.8■□□□□ 0.12
GRIA3-209ENST00000622768 FAM9AQ8IZU1 332 aaPredicted RBP15.75■□□□□ 0.11
GRIA3-209ENST00000622768 SHROOM4Q9ULL8 1493 aa15.71■□□□□ 0.11
GRIA3-209ENST00000622768 PABPN1Q86U42 306 aaKnown RBP eCLIP15.7■□□□□ 0.1
GRIA3-209ENST00000622768 NACADO15069 1562 aa15.61■□□□□ 0.09
GRIA3-209ENST00000622768 SUPT5HO00267 1087 aaKnown RBP15.42■□□□□ 0.06
GRIA3-209ENST00000622768 SCRIBQ14160 1630 aa15.25■□□□□ 0.03
GRIA3-209ENST00000622768 ZCCHC6Q5VYS8 1495 aaKnown RBP15.23■□□□□ 0.03
GRIA3-209ENST00000622768 MYO15BQ96JP2 1530 aa15.11■□□□□ 0.01
GRIA3-209ENST00000622768 DCAF1Q9Y4B6 1507 aa15.09■□□□□ 0.01
GRIA3-209ENST00000622768 ERCC6Q03468 1493 aa14.93□□□□□ -0.02
GRIA3-209ENST00000622768 CECR2Q9BXF3 1484 aa14.81□□□□□ -0.04
GRIA3-209ENST00000622768 APLP2Q06481 763 aa14.8□□□□□ -0.04
GRIA3-209ENST00000622768 BAZ1BQ9UIG0 1483 aaKnown RBP14.75□□□□□ -0.05
GRIA3-209ENST00000622768 FBLN2P98095 1184 aa14.72□□□□□ -0.05
GRIA3-209ENST00000622768 TRIM41Q8WV44 630 aa14.69□□□□□ -0.06
GRIA3-209ENST00000622768 SMARCA2P51531 1590 aa14.68□□□□□ -0.06
GRIA3-209ENST00000622768 BAZ1AQ9NRL2 1556 aaPredicted RBP14.64□□□□□ -0.07
GRIA3-209ENST00000622768 PDS5BQ9NTI5 1447 aa14.64□□□□□ -0.07
GRIA3-209ENST00000622768 NPM1P06748 294 aaKnown RBP eCLIP14.62□□□□□ -0.07
GRIA3-209ENST00000622768 ATP1B4Q9UN42 357 aaPredicted RBP14.53□□□□□ -0.08
GRIA3-209ENST00000622768 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
GRIA3-209ENST00000622768 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.09
GRIA3-209ENST00000622768 MYT1LQ9UL68 1186 aa14.48□□□□□ -0.09
GRIA3-209ENST00000622768 UBTFP17480 764 aaKnown RBP14.48□□□□□ -0.09
GRIA3-209ENST00000622768 CHMP7Q8WUX9 453 aaPredicted RBP14.47□□□□□ -0.09
GRIA3-209ENST00000622768 TTBK1Q5TCY1 1321 aaPredicted RBP14.44□□□□□ -0.1
GRIA3-209ENST00000622768 EIF4G1Q04637 1599 aaKnown RBP14.4□□□□□ -0.1
GRIA3-209ENST00000622768 RANGAP1P46060 587 aaPredicted RBP14.36□□□□□ -0.11
GRIA3-209ENST00000622768 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
GRIA3-209ENST00000622768 CC2D2AQ9P2K1 1620 aa14.31□□□□□ -0.12
GRIA3-209ENST00000622768 ATAD2BQ9ULI0 1458 aa14.29□□□□□ -0.12
GRIA3-209ENST00000622768 CADPSQ9ULU8 1353 aa14.29□□□□□ -0.12
GRIA3-209ENST00000622768 NCAPD3P42695 1498 aa14.28□□□□□ -0.12
GRIA3-209ENST00000622768 CEP164Q9UPV0 1460 aa14.25□□□□□ -0.13
GRIA3-209ENST00000622768 ABCC8Q09428 1581 aa14.25□□□□□ -0.13
GRIA3-209ENST00000622768 TRHP20396 242 aaPredicted RBP14.23□□□□□ -0.13
GRIA3-209ENST00000622768 OSCARQ8IYS5 282 aa14.21□□□□□ -0.13
GRIA3-209ENST00000622768 CDK11AQ9UQ88 783 aaPredicted RBP14.2□□□□□ -0.14
GRIA3-209ENST00000622768 RSF1Q96T23 1441 aaPredicted RBP14.2□□□□□ -0.14
GRIA3-209ENST00000622768 SMARCA4P51532 1647 aa14.19□□□□□ -0.14
GRIA3-209ENST00000622768 DNAJC5BQ9UF47 199 aa14.18□□□□□ -0.14
GRIA3-209ENST00000622768 ESF1Q9H501 851 aaKnown RBP14.16□□□□□ -0.14
GRIA3-209ENST00000622768 HMGXB3Q12766 1538 aa14.11□□□□□ -0.15
GRIA3-209ENST00000622768 BICRAQ9NZM4 1560 aa14.08□□□□□ -0.16
GRIA3-209ENST00000622768 WRNQ14191 1432 aaPredicted RBP eCLIP14.07□□□□□ -0.16
GRIA3-209ENST00000622768 TOP2AP11388 1531 aaKnown RBP14.07□□□□□ -0.16
GRIA3-209ENST00000622768 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
GRIA3-209ENST00000622768 MROH2BQ7Z745 1585 aa14.05□□□□□ -0.16
GRIA3-209ENST00000622768 MRC2Q9UBG0 1479 aa14.04□□□□□ -0.16
GRIA3-209ENST00000622768 SOGA1O94964 1423 aa14□□□□□ -0.17
GRIA3-209ENST00000622768 KIF27Q86VH2 1401 aa13.99□□□□□ -0.17
GRIA3-209ENST00000622768 AEBP2Q6ZN18 517 aaPredicted RBP13.99□□□□□ -0.17
GRIA3-209ENST00000622768 CUX2O14529 1486 aa13.97□□□□□ -0.17
GRIA3-209ENST00000622768 LAMC3Q9Y6N6 1575 aa13.96□□□□□ -0.17
GRIA3-209ENST00000622768 CARMIL2Q6F5E8 1435 aa13.95□□□□□ -0.18
GRIA3-209ENST00000622768 CSRNP3Q8WYN3 585 aa13.93□□□□□ -0.18
GRIA3-209ENST00000622768 CCDC88BA6NC98 1476 aa13.9□□□□□ -0.18
GRIA3-209ENST00000622768 IFT140Q96RY7 1462 aa13.89□□□□□ -0.19
GRIA3-209ENST00000622768 EEA1Q15075 1411 aa13.85□□□□□ -0.19
GRIA3-209ENST00000622768 UNC13AQ9UPW8 1703 aa13.83□□□□□ -0.2
GRIA3-209ENST00000622768 PLEKHD1A6NEE1 506 aa13.83□□□□□ -0.2
GRIA3-209ENST00000622768 CYB5RLQ6IPT4 315 aa13.81□□□□□ -0.2
GRIA3-209ENST00000622768 WIZO95785 1651 aa13.8□□□□□ -0.2
GRIA3-209ENST00000622768 TDRD9Q8NDG6 1382 aaKnown RBP13.79□□□□□ -0.2
GRIA3-209ENST00000622768 ARID4BQ4LE39 1312 aaPredicted RBP13.78□□□□□ -0.2
GRIA3-209ENST00000622768 CFTRP13569 1480 aa13.77□□□□□ -0.2
GRIA3-209ENST00000622768 P3H3Q8IVL6 736 aa13.77□□□□□ -0.21
GRIA3-209ENST00000622768 KCNH8Q96L42 1107 aa13.72□□□□□ -0.21
GRIA3-209ENST00000622768 CARMIL1Q5VZK9 1371 aa13.72□□□□□ -0.21
GRIA3-209ENST00000622768 NESP48681 1621 aa13.72□□□□□ -0.21
GRIA3-209ENST00000622768 CHIC1Q5VXU3 224 aa13.71□□□□□ -0.22
GRIA3-209ENST00000622768 GRIN2BQ13224 1484 aa13.7□□□□□ -0.22
GRIA3-209ENST00000622768 ARID3CA6NKF2 412 aa13.7□□□□□ -0.22
GRIA3-209ENST00000622768 BCANQ96GW7 911 aa13.68□□□□□ -0.22
GRIA3-209ENST00000622768 ZNF777Q9ULD5 760 aaPredicted RBP13.68□□□□□ -0.22
GRIA3-209ENST00000622768 STAG3Q9UJ98 1225 aa13.67□□□□□ -0.22
GRIA3-209ENST00000622768 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
GRIA3-209ENST00000622768 GOLGA3Q08378 1498 aa13.66□□□□□ -0.22
GRIA3-209ENST00000622768 JPH4Q96JJ6 628 aa13.65□□□□□ -0.22
GRIA3-209ENST00000622768 PEG3Q9GZU2 1588 aa13.64□□□□□ -0.23
GRIA3-209ENST00000622768 TSPY4P0CV99 314 aa13.61□□□□□ -0.23
GRIA3-209ENST00000622768 TSPY10P0CW01 314 aa13.61□□□□□ -0.23
GRIA3-209ENST00000622768 PLPPR3Q6T4P5 718 aa13.61□□□□□ -0.23
GRIA3-209ENST00000622768 CLIP1P30622 1438 aa13.61□□□□□ -0.23
GRIA3-209ENST00000622768 DNMBPQ6XZF7 1577 aa13.6□□□□□ -0.23
GRIA3-209ENST00000622768 FGD5Q6ZNL6 1462 aa13.6□□□□□ -0.23
GRIA3-209ENST00000622768 FHAD1B1AJZ9 1412 aa13.59□□□□□ -0.23
GRIA3-209ENST00000622768 FAM50AQ14320 339 aaKnown RBP13.58□□□□□ -0.24
GRIA3-209ENST00000622768 PTPRGP23470 1445 aa13.58□□□□□ -0.24
GRIA3-209ENST00000622768 TOPBP1Q92547 1522 aa13.57□□□□□ -0.24
GRIA3-209ENST00000622768 MTUS2Q5JR59 1369 aa13.55□□□□□ -0.24
GRIA3-209ENST00000622768 AQRO60306 1485 aaKnown RBP eCLIP13.54□□□□□ -0.24
GRIA3-209ENST00000622768 ACIN1Q9UKV3 1341 aaKnown RBP13.53□□□□□ -0.24
GRIA3-209ENST00000622768 FAM69CQ0P6D2 419 aa13.53□□□□□ -0.24
GRIA3-209ENST00000622768 SYNJ1O43426 1573 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms