RNA–Protein interactions for RNA: ENST00000622166.1

IGHV3-54-201, Transcript of immunoglobulin heavy variable 3-54 (pseudogene), humanhuman

BASIC

Gene IGHV3-54, Length 353 nt, Biotype IG V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV3-54-201ENST00000622166 NISCHQ9Y2I1 1504 aa20.24■□□□□ 0.83
IGHV3-54-201ENST00000622166 CCDC180Q9P1Z9 1646 aa17.36■□□□□ 0.37
IGHV3-54-201ENST00000622166 ZCCHC6Q5VYS8 1495 aaKnown RBP17.13■□□□□ 0.33
IGHV3-54-201ENST00000622166 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
IGHV3-54-201ENST00000622166 DCAF1Q9Y4B6 1507 aa16.75■□□□□ 0.27
IGHV3-54-201ENST00000622166 SUPT5HO00267 1087 aaKnown RBP16.59■□□□□ 0.25
IGHV3-54-201ENST00000622166 DCAF8L2P0C7V8 631 aa16.43■□□□□ 0.22
IGHV3-54-201ENST00000622166 MYO15BQ96JP2 1530 aa16.3■□□□□ 0.2
IGHV3-54-201ENST00000622166 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
IGHV3-54-201ENST00000622166 ABCC9O60706 1549 aa16.16■□□□□ 0.18
IGHV3-54-201ENST00000622166 SCRIBQ14160 1630 aa16.03■□□□□ 0.16
IGHV3-54-201ENST00000622166 NACADO15069 1562 aa16■□□□□ 0.15
IGHV3-54-201ENST00000622166 RSF1Q96T23 1441 aaPredicted RBP15.95■□□□□ 0.14
IGHV3-54-201ENST00000622166 RB1CC1Q8TDY2 1594 aa15.84■□□□□ 0.13
IGHV3-54-201ENST00000622166 HRCP23327 699 aa15.73■□□□□ 0.11
IGHV3-54-201ENST00000622166 CECR2Q9BXF3 1484 aa15.68■□□□□ 0.1
IGHV3-54-201ENST00000622166 MROH2BQ7Z745 1585 aa15.67■□□□□ 0.1
IGHV3-54-201ENST00000622166 LOC105371045A0A1W2PR82 267 aa15.66■□□□□ 0.1
IGHV3-54-201ENST00000622166 PCGF6Q9BYE7 350 aa15.59■□□□□ 0.09
IGHV3-54-201ENST00000622166 BAZ1AQ9NRL2 1556 aaPredicted RBP15.58■□□□□ 0.09
IGHV3-54-201ENST00000622166 WIZO95785 1651 aa15.58■□□□□ 0.08
IGHV3-54-201ENST00000622166 TRIM41Q8WV44 630 aa15.55■□□□□ 0.08
IGHV3-54-201ENST00000622166 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
IGHV3-54-201ENST00000622166 UNC13AQ9UPW8 1703 aa15.47■□□□□ 0.07
IGHV3-54-201ENST00000622166 TRIM26Q12899 539 aaPredicted RBP15.46■□□□□ 0.07
IGHV3-54-201ENST00000622166 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
IGHV3-54-201ENST00000622166 TOP2AP11388 1531 aaKnown RBP15.43■□□□□ 0.06
IGHV3-54-201ENST00000622166 SMARCA2P51531 1590 aa15.32■□□□□ 0.04
IGHV3-54-201ENST00000622166 FAM9AQ8IZU1 332 aaPredicted RBP15.29■□□□□ 0.04
IGHV3-54-201ENST00000622166 CCDC88BA6NC98 1476 aa15.28■□□□□ 0.04
IGHV3-54-201ENST00000622166 BICRAQ9NZM4 1560 aa15.27■□□□□ 0.03
IGHV3-54-201ENST00000622166 PPARGC1BQ86YN6 1023 aaKnown RBP15.23■□□□□ 0.03
IGHV3-54-201ENST00000622166 PEG3Q9GZU2 1588 aa15.22■□□□□ 0.03
IGHV3-54-201ENST00000622166 ZEB1P37275 1124 aaPredicted RBP15.2■□□□□ 0.02
IGHV3-54-201ENST00000622166 ABCC8Q09428 1581 aa15.15■□□□□ 0.02
IGHV3-54-201ENST00000622166 EEA1Q15075 1411 aa15.12■□□□□ 0.01
IGHV3-54-201ENST00000622166 WRNQ14191 1432 aaPredicted RBP eCLIP15.06■□□□□ 0
IGHV3-54-201ENST00000622166 TNIKQ9UKE5 1360 aa15.03■□□□□ -0
IGHV3-54-201ENST00000622166 PABPN1Q86U42 306 aaKnown RBP eCLIP15.03■□□□□ -0
IGHV3-54-201ENST00000622166 EHMT2Q96KQ7 1210 aa15.02■□□□□ -0
IGHV3-54-201ENST00000622166 ATAD2BQ9ULI0 1458 aa15.01□□□□□ -0.01
IGHV3-54-201ENST00000622166 SOGA1O94964 1423 aa15□□□□□ -0.01
IGHV3-54-201ENST00000622166 CEP162Q5TB80 1403 aa14.96□□□□□ -0.01
IGHV3-54-201ENST00000622166 CSRNP3Q8WYN3 585 aa14.96□□□□□ -0.01
IGHV3-54-201ENST00000622166 BAZ1BQ9UIG0 1483 aaKnown RBP14.94□□□□□ -0.02
IGHV3-54-201ENST00000622166 RUSC2Q8N2Y8 1516 aa14.93□□□□□ -0.02
IGHV3-54-201ENST00000622166 GOLGA3Q08378 1498 aa14.93□□□□□ -0.02
IGHV3-54-201ENST00000622166 SYNJ1O43426 1573 aa14.91□□□□□ -0.02
IGHV3-54-201ENST00000622166 KIF21BO75037 1637 aa14.91□□□□□ -0.02
IGHV3-54-201ENST00000622166 CEP164Q9UPV0 1460 aa14.85□□□□□ -0.03
IGHV3-54-201ENST00000622166 HMGXB3Q12766 1538 aa14.81□□□□□ -0.04
IGHV3-54-201ENST00000622166 TOP2BQ02880 1626 aa14.8□□□□□ -0.04
IGHV3-54-201ENST00000622166 BIVM-ERCC5R4GMW8 1640 aa14.8□□□□□ -0.04
IGHV3-54-201ENST00000622166 UBTFP17480 764 aaKnown RBP14.78□□□□□ -0.04
IGHV3-54-201ENST00000622166 NCAPD3P42695 1498 aa14.77□□□□□ -0.04
IGHV3-54-201ENST00000622166 CCER1Q8TC90 406 aaPredicted RBP14.71□□□□□ -0.05
IGHV3-54-201ENST00000622166 CLIP1P30622 1438 aa14.7□□□□□ -0.06
IGHV3-54-201ENST00000622166 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.7□□□□□ -0.06
IGHV3-54-201ENST00000622166 VPS8Q8N3P4 1428 aa14.67□□□□□ -0.06
IGHV3-54-201ENST00000622166 ERICH3Q5RHP9 1530 aa14.67□□□□□ -0.06
IGHV3-54-201ENST00000622166 RAPGEF2Q9Y4G8 1499 aa14.66□□□□□ -0.06
IGHV3-54-201ENST00000622166 PRDM2Q13029 1718 aa14.63□□□□□ -0.07
IGHV3-54-201ENST00000622166 PRXQ9BXM0 1461 aa14.63□□□□□ -0.07
IGHV3-54-201ENST00000622166 CFTRP13569 1480 aa14.62□□□□□ -0.07
IGHV3-54-201ENST00000622166 CUX1P39880 1505 aa14.61□□□□□ -0.07
IGHV3-54-201ENST00000622166 TTBK1Q5TCY1 1321 aaPredicted RBP14.55□□□□□ -0.08
IGHV3-54-201ENST00000622166 KIF27Q86VH2 1401 aa14.53□□□□□ -0.08
IGHV3-54-201ENST00000622166 ARAP1Q96P48 1450 aa14.51□□□□□ -0.09
IGHV3-54-201ENST00000622166 APLP2Q06481 763 aa14.49□□□□□ -0.09
IGHV3-54-201ENST00000622166 DIEXFQ68CQ4 756 aaKnown RBP14.43□□□□□ -0.1
IGHV3-54-201ENST00000622166 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
IGHV3-54-201ENST00000622166 ZNF316A6NFI3 1004 aaPredicted RBP14.41□□□□□ -0.1
IGHV3-54-201ENST00000622166 HNRNPUL2Q1KMD3 747 aaKnown RBP14.4□□□□□ -0.1
IGHV3-54-201ENST00000622166 SCAF1Q9H7N4 1312 aaKnown RBP14.39□□□□□ -0.11
IGHV3-54-201ENST00000622166 ARHGAP35Q9NRY4 1499 aa14.38□□□□□ -0.11
IGHV3-54-201ENST00000622166 CLSPNQ9HAW4 1339 aa14.37□□□□□ -0.11
IGHV3-54-201ENST00000622166 IGF1RP08069 1367 aa14.36□□□□□ -0.11
IGHV3-54-201ENST00000622166 RRBP1Q9P2E9 1410 aaKnown RBP14.36□□□□□ -0.11
IGHV3-54-201ENST00000622166 CUX2O14529 1486 aa14.35□□□□□ -0.11
IGHV3-54-201ENST00000622166 MAP3K1Q13233 1512 aa14.35□□□□□ -0.11
IGHV3-54-201ENST00000622166 CC2D2AQ9P2K1 1620 aa14.34□□□□□ -0.11
IGHV3-54-201ENST00000622166 ACIN1Q9UKV3 1341 aaKnown RBP14.34□□□□□ -0.11
IGHV3-54-201ENST00000622166 FGD5Q6ZNL6 1462 aa14.33□□□□□ -0.12
IGHV3-54-201ENST00000622166 RANGAP1P46060 587 aaPredicted RBP14.32□□□□□ -0.12
IGHV3-54-201ENST00000622166 KANK4Q5T7N3 995 aaPredicted RBP14.31□□□□□ -0.12
IGHV3-54-201ENST00000622166 CARMIL1Q5VZK9 1371 aa14.28□□□□□ -0.12
IGHV3-54-201ENST00000622166 DNMBPQ6XZF7 1577 aa14.28□□□□□ -0.12
IGHV3-54-201ENST00000622166 FANCD2Q9BXW9 1451 aa14.27□□□□□ -0.12
IGHV3-54-201ENST00000622166 DHX57Q6P158 1386 aaKnown RBP14.27□□□□□ -0.12
IGHV3-54-201ENST00000622166 CENPBP07199 599 aaPredicted RBP14.27□□□□□ -0.13
IGHV3-54-201ENST00000622166 TIAM1Q13009 1591 aa14.26□□□□□ -0.13
IGHV3-54-201ENST00000622166 NEUROD1Q13562 356 aa14.25□□□□□ -0.13
IGHV3-54-201ENST00000622166 CCNB3Q8WWL7 1395 aa14.23□□□□□ -0.13
IGHV3-54-201ENST00000622166 ABCA10Q8WWZ4 1543 aa14.23□□□□□ -0.13
IGHV3-54-201ENST00000622166 CFAP43Q8NDM7 1665 aa14.21□□□□□ -0.13
IGHV3-54-201ENST00000622166 PELP1Q8IZL8 1130 aaKnown RBP14.21□□□□□ -0.13
IGHV3-54-201ENST00000622166 TOPBP1Q92547 1522 aa14.2□□□□□ -0.14
IGHV3-54-201ENST00000622166 CUL7Q14999 1698 aa14.2□□□□□ -0.14
IGHV3-54-201ENST00000622166 FHAD1B1AJZ9 1412 aa14.19□□□□□ -0.14
IGHV3-54-201ENST00000622166 LRRC9Q6ZRR7 1453 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms