RNA–Protein interactions for RNA: ENST00000618516.4

SYCP1-210, Transcript of synaptonemal complex protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SYCP1, Length 3,109 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYCP1-210ENST00000618516 NISCHQ9Y2I1 1504 aa10.55□□□□□ -0.72
SYCP1-210ENST00000618516 AEBP2Q6ZN18 517 aaPredicted RBP9.97□□□□□ -0.81
SYCP1-210ENST00000618516 CHIC1Q5VXU3 224 aa9.62□□□□□ -0.87
SYCP1-210ENST00000618516 DCAF8L2P0C7V8 631 aa9.49□□□□□ -0.89
SYCP1-210ENST00000618516 ABCC9O60706 1549 aa9.41□□□□□ -0.9
SYCP1-210ENST00000618516 CCDC180Q9P1Z9 1646 aa9.11□□□□□ -0.95
SYCP1-210ENST00000618516 PABPN1Q86U42 306 aaKnown RBP eCLIP8.98□□□□□ -0.97
SYCP1-210ENST00000618516 SHROOM4Q9ULL8 1493 aa8.95□□□□□ -0.98
SYCP1-210ENST00000618516 SENP3Q9H4L4 574 aaPredicted RBP8.87□□□□□ -0.99
SYCP1-210ENST00000618516 ZCCHC6Q5VYS8 1495 aaKnown RBP8.75□□□□□ -1.01
SYCP1-210ENST00000618516 RB1CC1Q8TDY2 1594 aa8.74□□□□□ -1.01
SYCP1-210ENST00000618516 SCRIBQ14160 1630 aa8.73□□□□□ -1.01
SYCP1-210ENST00000618516 NACADO15069 1562 aa8.67□□□□□ -1.02
SYCP1-210ENST00000618516 DNAJC5BQ9UF47 199 aa8.66□□□□□ -1.02
SYCP1-210ENST00000618516 PHF23Q9BUL5 403 aaPredicted RBP8.52□□□□□ -1.05
SYCP1-210ENST00000618516 UNC13AQ9UPW8 1703 aa8.5□□□□□ -1.05
SYCP1-210ENST00000618516 SUPT5HO00267 1087 aaKnown RBP8.48□□□□□ -1.05
SYCP1-210ENST00000618516 DCAF1Q9Y4B6 1507 aa8.48□□□□□ -1.05
SYCP1-210ENST00000618516 BICRAQ9NZM4 1560 aa8.47□□□□□ -1.05
SYCP1-210ENST00000618516 POTEDQ86YR6 584 aa8.45□□□□□ -1.06
SYCP1-210ENST00000618516 MYO15BQ96JP2 1530 aa8.44□□□□□ -1.06
SYCP1-210ENST00000618516 CECR2Q9BXF3 1484 aa8.4□□□□□ -1.06
SYCP1-210ENST00000618516 EIF4G1Q04637 1599 aaKnown RBP8.31□□□□□ -1.08
SYCP1-210ENST00000618516 CC2D2AQ9P2K1 1620 aa8.3□□□□□ -1.08
SYCP1-210ENST00000618516 MROH2BQ7Z745 1585 aa8.25□□□□□ -1.09
SYCP1-210ENST00000618516 ATAD2BQ9ULI0 1458 aa8.17□□□□□ -1.1
SYCP1-210ENST00000618516 BAZ1BQ9UIG0 1483 aaKnown RBP8.17□□□□□ -1.1
SYCP1-210ENST00000618516 RSF1Q96T23 1441 aaPredicted RBP8.16□□□□□ -1.1
SYCP1-210ENST00000618516 SMARCA4P51532 1647 aa8.16□□□□□ -1.1
SYCP1-210ENST00000618516 WIZO95785 1651 aa8.16□□□□□ -1.1
SYCP1-210ENST00000618516 BAZ1AQ9NRL2 1556 aaPredicted RBP8.15□□□□□ -1.1
SYCP1-210ENST00000618516 NESP48681 1621 aa8.13□□□□□ -1.11
SYCP1-210ENST00000618516 FOXD1Q16676 465 aa8.12□□□□□ -1.11
SYCP1-210ENST00000618516 ERCC6Q03468 1493 aa8.09□□□□□ -1.11
SYCP1-210ENST00000618516 SMARCA2P51531 1590 aa8.07□□□□□ -1.12
SYCP1-210ENST00000618516 NCAPD3P42695 1498 aa8.06□□□□□ -1.12
SYCP1-210ENST00000618516 MSH5O43196 834 aa8.05□□□□□ -1.12
SYCP1-210ENST00000618516 EHMT2Q96KQ7 1210 aa8.05□□□□□ -1.12
SYCP1-210ENST00000618516 CCDC88BA6NC98 1476 aa7.98□□□□□ -1.13
SYCP1-210ENST00000618516 CADPSQ9ULU8 1353 aa7.96□□□□□ -1.13
SYCP1-210ENST00000618516 HMGXB3Q12766 1538 aa7.95□□□□□ -1.14
SYCP1-210ENST00000618516 FBLN2P98095 1184 aa7.95□□□□□ -1.14
SYCP1-210ENST00000618516 TOP2AP11388 1531 aaKnown RBP7.93□□□□□ -1.14
SYCP1-210ENST00000618516 FAM9AQ8IZU1 332 aaPredicted RBP7.93□□□□□ -1.14
SYCP1-210ENST00000618516 PDS5BQ9NTI5 1447 aa7.91□□□□□ -1.14
SYCP1-210ENST00000618516 FANCD2Q9BXW9 1451 aa7.9□□□□□ -1.14
SYCP1-210ENST00000618516 PEG3Q9GZU2 1588 aa7.89□□□□□ -1.15
SYCP1-210ENST00000618516 RANGAP1P46060 587 aaPredicted RBP7.87□□□□□ -1.15
SYCP1-210ENST00000618516 TTBK1Q5TCY1 1321 aaPredicted RBP7.87□□□□□ -1.15
SYCP1-210ENST00000618516 CEP164Q9UPV0 1460 aa7.86□□□□□ -1.15
SYCP1-210ENST00000618516 CFTRP13569 1480 aa7.84□□□□□ -1.15
SYCP1-210ENST00000618516 KIF21AQ7Z4S6 1674 aa7.84□□□□□ -1.16
SYCP1-210ENST00000618516 TRIM41Q8WV44 630 aa7.83□□□□□ -1.16
SYCP1-210ENST00000618516 ABCC8Q09428 1581 aa7.83□□□□□ -1.16
SYCP1-210ENST00000618516 TDRD9Q8NDG6 1382 aaKnown RBP7.82□□□□□ -1.16
SYCP1-210ENST00000618516 LAMC3Q9Y6N6 1575 aa7.81□□□□□ -1.16
SYCP1-210ENST00000618516 RAD54L2Q9Y4B4 1467 aa7.79□□□□□ -1.16
SYCP1-210ENST00000618516 URB2Q14146 1524 aaKnown RBP7.78□□□□□ -1.16
SYCP1-210ENST00000618516 MRC2Q9UBG0 1479 aa7.78□□□□□ -1.16
SYCP1-210ENST00000618516 AQRO60306 1485 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYCP1-210ENST00000618516 ZNF608Q9ULD9 1512 aaPredicted RBP7.76□□□□□ -1.17
SYCP1-210ENST00000618516 SOGA1O94964 1423 aa7.74□□□□□ -1.17
SYCP1-210ENST00000618516 WRNQ14191 1432 aaPredicted RBP eCLIP7.74□□□□□ -1.17
SYCP1-210ENST00000618516 CHMP7Q8WUX9 453 aaPredicted RBP7.74□□□□□ -1.17
SYCP1-210ENST00000618516 TOPBP1Q92547 1522 aa7.73□□□□□ -1.17
SYCP1-210ENST00000618516 FGD5Q6ZNL6 1462 aa7.72□□□□□ -1.17
SYCP1-210ENST00000618516 THOC2Q8NI27 1593 aaKnown RBP7.71□□□□□ -1.18
SYCP1-210ENST00000618516 POLA1P09884 1462 aaPredicted RBP7.7□□□□□ -1.18
SYCP1-210ENST00000618516 CUX1P39880 1505 aa7.7□□□□□ -1.18
SYCP1-210ENST00000618516 CUX2O14529 1486 aa7.68□□□□□ -1.18
SYCP1-210ENST00000618516 ARID3CA6NKF2 412 aa7.67□□□□□ -1.18
SYCP1-210ENST00000618516 OSCARQ8IYS5 282 aa7.67□□□□□ -1.18
SYCP1-210ENST00000618516 CYB5RLQ6IPT4 315 aa7.66□□□□□ -1.18
SYCP1-210ENST00000618516 SYNJ1O43426 1573 aa7.66□□□□□ -1.18
SYCP1-210ENST00000618516 WDR62O43379 1518 aa7.65□□□□□ -1.18
SYCP1-210ENST00000618516 P3H3Q8IVL6 736 aa7.65□□□□□ -1.18
SYCP1-210ENST00000618516 RUSC2Q8N2Y8 1516 aa7.64□□□□□ -1.19
SYCP1-210ENST00000618516 DNMBPQ6XZF7 1577 aa7.63□□□□□ -1.19
SYCP1-210ENST00000618516 UBTFP17480 764 aaKnown RBP7.63□□□□□ -1.19
SYCP1-210ENST00000618516 DNAJC5Q9H3Z4 198 aa7.63□□□□□ -1.19
SYCP1-210ENST00000618516 ATP1B4Q9UN42 357 aaPredicted RBP7.62□□□□□ -1.19
SYCP1-210ENST00000618516 IFT140Q96RY7 1462 aa7.61□□□□□ -1.19
SYCP1-210ENST00000618516 LOC105371045A0A1W2PR82 267 aa7.61□□□□□ -1.19
SYCP1-210ENST00000618516 GAPVD1Q14C86 1478 aa7.6□□□□□ -1.19
SYCP1-210ENST00000618516 SNAPC4Q5SXM2 1469 aa7.6□□□□□ -1.19
SYCP1-210ENST00000618516 EIF4G3O43432 1585 aaKnown RBP7.58□□□□□ -1.2
SYCP1-210ENST00000618516 TRHP20396 242 aaPredicted RBP7.58□□□□□ -1.2
SYCP1-210ENST00000618516 KIF27Q86VH2 1401 aa7.55□□□□□ -1.2
SYCP1-210ENST00000618516 CSRNP3Q8WYN3 585 aa7.55□□□□□ -1.2
SYCP1-210ENST00000618516 PRDM2Q13029 1718 aa7.55□□□□□ -1.2
SYCP1-210ENST00000618516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.54□□□□□ -1.2
SYCP1-210ENST00000618516 HNRNPUL2Q1KMD3 747 aaKnown RBP7.54□□□□□ -1.2
SYCP1-210ENST00000618516 TOP2BQ02880 1626 aa7.54□□□□□ -1.2
SYCP1-210ENST00000618516 GRIN2BQ13224 1484 aa7.54□□□□□ -1.2
SYCP1-210ENST00000618516 CARMIL1Q5VZK9 1371 aa7.53□□□□□ -1.2
SYCP1-210ENST00000618516 TARBP1Q13395 1621 aaKnown RBP7.53□□□□□ -1.2
SYCP1-210ENST00000618516 IGF1RP08069 1367 aa7.53□□□□□ -1.2
SYCP1-210ENST00000618516 JPH4Q96JJ6 628 aa7.52□□□□□ -1.21
SYCP1-210ENST00000618516 ABCA10Q8WWZ4 1543 aa7.51□□□□□ -1.21
SYCP1-210ENST00000618516 PPARGC1BQ86YN6 1023 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms