RNA–Protein interactions for RNA: ENST00000618166.4

SCAMP1-206, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 2 BASIC

Gene SCAMP1, Length 1,358 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-206ENST00000618166 AEBP2Q6ZN18 517 aaPredicted RBP25.73■■□□□ 1.71
SCAMP1-206ENST00000618166 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
SCAMP1-206ENST00000618166 SENP3Q9H4L4 574 aaPredicted RBP22.03■■□□□ 1.12
SCAMP1-206ENST00000618166 PHF23Q9BUL5 403 aaPredicted RBP21.66■■□□□ 1.06
SCAMP1-206ENST00000618166 POTEDQ86YR6 584 aa21.04■□□□□ 0.96
SCAMP1-206ENST00000618166 FOXD1Q16676 465 aa20.59■□□□□ 0.89
SCAMP1-206ENST00000618166 MSH5O43196 834 aa19.47■□□□□ 0.71
SCAMP1-206ENST00000618166 PIAS4Q8N2W9 510 aaPredicted RBP19.09■□□□□ 0.65
SCAMP1-206ENST00000618166 PLPPR3Q6T4P5 718 aa18.88■□□□□ 0.61
SCAMP1-206ENST00000618166 PPP6R1Q9UPN7 881 aa18.86■□□□□ 0.61
SCAMP1-206ENST00000618166 ADRA2BP18089 450 aa18.75■□□□□ 0.59
SCAMP1-206ENST00000618166 NISCHQ9Y2I1 1504 aa18.39■□□□□ 0.53
SCAMP1-206ENST00000618166 ABCC9O60706 1549 aa17.92■□□□□ 0.46
SCAMP1-206ENST00000618166 DNAJC5BQ9UF47 199 aa17.72■□□□□ 0.43
SCAMP1-206ENST00000618166 DMRT2Q9Y5R5 561 aa17.4■□□□□ 0.38
SCAMP1-206ENST00000618166 MAPK8IP2Q13387 824 aaPredicted RBP17.38■□□□□ 0.37
SCAMP1-206ENST00000618166 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
SCAMP1-206ENST00000618166 SCAF1Q9H7N4 1312 aaKnown RBP17.17■□□□□ 0.34
SCAMP1-206ENST00000618166 DNAJC5Q9H3Z4 198 aa16.83■□□□□ 0.28
SCAMP1-206ENST00000618166 CCDC180Q9P1Z9 1646 aa16.82■□□□□ 0.28
SCAMP1-206ENST00000618166 DCAF8L1A6NGE4 600 aa16.64■□□□□ 0.25
SCAMP1-206ENST00000618166 RNF39Q9H2S5 420 aa16.58■□□□□ 0.24
SCAMP1-206ENST00000618166 HOXD11P31277 338 aaPredicted RBP16.57■□□□□ 0.24
SCAMP1-206ENST00000618166 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
SCAMP1-206ENST00000618166 RB1CC1Q8TDY2 1594 aa16.5■□□□□ 0.23
SCAMP1-206ENST00000618166 PPP4R3CPQ6ZMV5 832 aa16.49■□□□□ 0.23
SCAMP1-206ENST00000618166 C1QBPQ07021 282 aaKnown RBP16.31■□□□□ 0.2
SCAMP1-206ENST00000618166 CNKSR2Q8WXI2 1034 aa16.3■□□□□ 0.2
SCAMP1-206ENST00000618166 RNF216Q9NWF9 866 aaPredicted RBP16.29■□□□□ 0.2
SCAMP1-206ENST00000618166 POTEHQ6S545 545 aa16.21■□□□□ 0.19
SCAMP1-206ENST00000618166 CECR2Q9BXF3 1484 aa16.19■□□□□ 0.18
SCAMP1-206ENST00000618166 UNC13AQ9UPW8 1703 aa16.17■□□□□ 0.18
SCAMP1-206ENST00000618166 BICRAQ9NZM4 1560 aa16.15■□□□□ 0.18
SCAMP1-206ENST00000618166 NACADO15069 1562 aa16.14■□□□□ 0.17
SCAMP1-206ENST00000618166 CC2D2AQ9P2K1 1620 aa16.08■□□□□ 0.16
SCAMP1-206ENST00000618166 DCAF8L2P0C7V8 631 aa16■□□□□ 0.15
SCAMP1-206ENST00000618166 EIF4G1Q04637 1599 aaKnown RBP15.8■□□□□ 0.12
SCAMP1-206ENST00000618166 TRIM41Q8WV44 630 aa15.78■□□□□ 0.12
SCAMP1-206ENST00000618166 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.74■□□□□ 0.114e-6■■■■□ 19.8
SCAMP1-206ENST00000618166 CUX2O14529 1486 aa15.71■□□□□ 0.11
SCAMP1-206ENST00000618166 NCBP3Q53F19 620 aaKnown RBP15.69■□□□□ 0.1
SCAMP1-206ENST00000618166 SHROOM4Q9ULL8 1493 aa15.67■□□□□ 0.1
SCAMP1-206ENST00000618166 MYO15BQ96JP2 1530 aa15.57■□□□□ 0.08
SCAMP1-206ENST00000618166 ERCC6Q03468 1493 aa15.46■□□□□ 0.07
SCAMP1-206ENST00000618166 NPM3O75607 178 aaKnown RBP15.46■□□□□ 0.07
SCAMP1-206ENST00000618166 SCRIBQ14160 1630 aa15.41■□□□□ 0.06
SCAMP1-206ENST00000618166 U3KPZ7 1027 aaPredicted RBP15.37■□□□□ 0.05
SCAMP1-206ENST00000618166 DSG3P32926 999 aa15.35■□□□□ 0.05
SCAMP1-206ENST00000618166 SPINK5Q9NQ38 1064 aaPredicted RBP15.29■□□□□ 0.04
SCAMP1-206ENST00000618166 CAPN15O75808 1086 aa15.27■□□□□ 0.04
SCAMP1-206ENST00000618166 NESP48681 1621 aa15.15■□□□□ 0.02
SCAMP1-206ENST00000618166 THOC2Q8NI27 1593 aaKnown RBP15.11■□□□□ 0.01
SCAMP1-206ENST00000618166 DCAF1Q9Y4B6 1507 aa15.05■□□□□ -0
SCAMP1-206ENST00000618166 ZCCHC6Q5VYS8 1495 aaKnown RBP15.04■□□□□ -0
SCAMP1-206ENST00000618166 SMARCA2P51531 1590 aa14.97□□□□□ -0.01
SCAMP1-206ENST00000618166 NCAPD3P42695 1498 aa14.96□□□□□ -0.02
SCAMP1-206ENST00000618166 SLC4A2P04920 1241 aa14.92□□□□□ -0.02
SCAMP1-206ENST00000618166 TRHP20396 242 aaPredicted RBP14.89□□□□□ -0.03
SCAMP1-206ENST00000618166 APLP2Q06481 763 aa14.88□□□□□ -0.03
SCAMP1-206ENST00000618166 ZNF219Q9P2Y4 722 aaPredicted RBP14.88□□□□□ -0.03
SCAMP1-206ENST00000618166 BAZ1AQ9NRL2 1556 aaPredicted RBP14.88□□□□□ -0.03
SCAMP1-206ENST00000618166 ABCB7O75027 752 aa14.86□□□□□ -0.03
SCAMP1-206ENST00000618166 OSCARQ8IYS5 282 aa14.85□□□□□ -0.03
SCAMP1-206ENST00000618166 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
SCAMP1-206ENST00000618166 ATAD2BQ9ULI0 1458 aa14.82□□□□□ -0.04
SCAMP1-206ENST00000618166 RIMBP3CA6NJZ7 1639 aa14.81□□□□□ -0.04
SCAMP1-206ENST00000618166 RIMBP3BA6NNM3 1639 aa14.81□□□□□ -0.04
SCAMP1-206ENST00000618166 RIMBP3Q9UFD9 1639 aa14.81□□□□□ -0.04
SCAMP1-206ENST00000618166 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
SCAMP1-206ENST00000618166 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
SCAMP1-206ENST00000618166 HMGXB3Q12766 1538 aa14.74□□□□□ -0.05
SCAMP1-206ENST00000618166 LAMC3Q9Y6N6 1575 aa14.74□□□□□ -0.05
SCAMP1-206ENST00000618166 KCNA4P22459 653 aa14.7□□□□□ -0.06
SCAMP1-206ENST00000618166 PDS5BQ9NTI5 1447 aa14.69□□□□□ -0.06
SCAMP1-206ENST00000618166 MRC2Q9UBG0 1479 aa14.67□□□□□ -0.06
SCAMP1-206ENST00000618166 ARHGEF11O15085 1522 aa14.67□□□□□ -0.06
SCAMP1-206ENST00000618166 WDR62O43379 1518 aa14.66□□□□□ -0.06
SCAMP1-206ENST00000618166 RBM42Q9BTD8 480 aaKnown RBP14.65□□□□□ -0.06
SCAMP1-206ENST00000618166 CYB5RLQ6IPT4 315 aa14.64□□□□□ -0.07
SCAMP1-206ENST00000618166 SAMD1Q6SPF0 538 aaPredicted RBP14.64□□□□□ -0.07
SCAMP1-206ENST00000618166 ILDR1Q86SU0 546 aaPredicted RBP14.62□□□□□ -0.07
SCAMP1-206ENST00000618166 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
SCAMP1-206ENST00000618166 SMARCA4P51532 1647 aa14.55□□□□□ -0.08
SCAMP1-206ENST00000618166 SP7Q8TDD2 431 aaPredicted RBP14.55□□□□□ -0.08
SCAMP1-206ENST00000618166 CHRDL2Q6WN34 429 aa14.53□□□□□ -0.08
SCAMP1-206ENST00000618166 ARAP1Q96P48 1450 aa14.49□□□□□ -0.09
SCAMP1-206ENST00000618166 CADPSQ9ULU8 1353 aa14.47□□□□□ -0.09
SCAMP1-206ENST00000618166 CEP164Q9UPV0 1460 aa14.41□□□□□ -0.1
SCAMP1-206ENST00000618166 POLA2Q14181 598 aa14.4□□□□□ -0.1
SCAMP1-206ENST00000618166 PEG3Q9GZU2 1588 aa14.37□□□□□ -0.11
SCAMP1-206ENST00000618166 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.12
SCAMP1-206ENST00000618166 ZNF608Q9ULD9 1512 aaPredicted RBP14.33□□□□□ -0.12
SCAMP1-206ENST00000618166 URB2Q14146 1524 aaKnown RBP14.32□□□□□ -0.12
SCAMP1-206ENST00000618166 MYCNP04198 464 aaPredicted RBP14.32□□□□□ -0.12
SCAMP1-206ENST00000618166 MROH2BQ7Z745 1585 aa14.22□□□□□ -0.13
SCAMP1-206ENST00000618166 AKT1S1Q96B36 256 aa14.22□□□□□ -0.13
SCAMP1-206ENST00000618166 RSF1Q96T23 1441 aaPredicted RBP14.21□□□□□ -0.13
SCAMP1-206ENST00000618166 CHD1O14646 1710 aa14.19□□□□□ -0.14
SCAMP1-206ENST00000618166 FBLN2P98095 1184 aa14.14□□□□□ -0.15
SCAMP1-206ENST00000618166 IFT140Q96RY7 1462 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms