RNA–Protein interactions for RNA: ENST00000609203.1

CLCN3P1-202, Transcript of chloride voltage-gated channel 3 pseudogene 1, humanhuman

TSL 2 BASIC

Gene CLCN3P1, Length 1,944 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P1-202ENST00000609203 NISCHQ9Y2I1 1504 aa18.07■□□□□ 0.48
CLCN3P1-202ENST00000609203 AEBP2Q6ZN18 517 aaPredicted RBP17.75■□□□□ 0.43
CLCN3P1-202ENST00000609203 CHIC1Q5VXU3 224 aa17.43■□□□□ 0.38
CLCN3P1-202ENST00000609203 CCDC180Q9P1Z9 1646 aa15.85■□□□□ 0.13
CLCN3P1-202ENST00000609203 SLC24A1O60721 1099 aa15.35■□□□□ 0.05
CLCN3P1-202ENST00000609203 ABCC9O60706 1549 aa15.34■□□□□ 0.05
CLCN3P1-202ENST00000609203 PHF23Q9BUL5 403 aaPredicted RBP15.29■□□□□ 0.04
CLCN3P1-202ENST00000609203 SENP3Q9H4L4 574 aaPredicted RBP15.13■□□□□ 0.01
CLCN3P1-202ENST00000609203 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
CLCN3P1-202ENST00000609203 DCAF8L2P0C7V8 631 aa14.98□□□□□ -0.01
CLCN3P1-202ENST00000609203 DCAF1Q9Y4B6 1507 aa14.89□□□□□ -0.03
CLCN3P1-202ENST00000609203 NACADO15069 1562 aa14.81□□□□□ -0.04
CLCN3P1-202ENST00000609203 MYO15BQ96JP2 1530 aa14.81□□□□□ -0.04
CLCN3P1-202ENST00000609203 RB1CC1Q8TDY2 1594 aa14.76□□□□□ -0.05
CLCN3P1-202ENST00000609203 SHROOM4Q9ULL8 1493 aa14.66□□□□□ -0.06
CLCN3P1-202ENST00000609203 UNC13AQ9UPW8 1703 aa14.6□□□□□ -0.07
CLCN3P1-202ENST00000609203 SCRIBQ14160 1630 aa14.6□□□□□ -0.07
CLCN3P1-202ENST00000609203 BICRAQ9NZM4 1560 aa14.47□□□□□ -0.09
CLCN3P1-202ENST00000609203 PABPN1Q86U42 306 aaKnown RBP eCLIP14.42□□□□□ -0.1
CLCN3P1-202ENST00000609203 SUPT5HO00267 1087 aaKnown RBP14.18□□□□□ -0.14
CLCN3P1-202ENST00000609203 PLPPR3Q6T4P5 718 aa14.18□□□□□ -0.14
CLCN3P1-202ENST00000609203 CECR2Q9BXF3 1484 aa14.14□□□□□ -0.15
CLCN3P1-202ENST00000609203 DAXXQ9UER7 740 aaPredicted RBP14.11□□□□□ -0.15
CLCN3P1-202ENST00000609203 MROH2BQ7Z745 1585 aa14□□□□□ -0.17
CLCN3P1-202ENST00000609203 EIF4G1Q04637 1599 aaKnown RBP13.99□□□□□ -0.17
CLCN3P1-202ENST00000609203 MYT1Q01538 1121 aa13.99□□□□□ -0.17
CLCN3P1-202ENST00000609203 FOXD1Q16676 465 aa13.99□□□□□ -0.17
CLCN3P1-202ENST00000609203 SMARCA4P51532 1647 aa13.96□□□□□ -0.17
CLCN3P1-202ENST00000609203 TTBK1Q5TCY1 1321 aaPredicted RBP13.96□□□□□ -0.18
CLCN3P1-202ENST00000609203 DNAJC5BQ9UF47 199 aa13.93□□□□□ -0.18
CLCN3P1-202ENST00000609203 RSF1Q96T23 1441 aaPredicted RBP13.93□□□□□ -0.18
CLCN3P1-202ENST00000609203 BAZ1AQ9NRL2 1556 aaPredicted RBP13.92□□□□□ -0.18
CLCN3P1-202ENST00000609203 WIZO95785 1651 aa13.87□□□□□ -0.19
CLCN3P1-202ENST00000609203 CC2D2AQ9P2K1 1620 aa13.87□□□□□ -0.19
CLCN3P1-202ENST00000609203 ATAD2BQ9ULI0 1458 aa13.8□□□□□ -0.2
CLCN3P1-202ENST00000609203 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
CLCN3P1-202ENST00000609203 PEG3Q9GZU2 1588 aa13.8□□□□□ -0.2
CLCN3P1-202ENST00000609203 NCAPD3P42695 1498 aa13.72□□□□□ -0.21
CLCN3P1-202ENST00000609203 SMARCA2P51531 1590 aa13.72□□□□□ -0.21
CLCN3P1-202ENST00000609203 PELP1Q8IZL8 1130 aaKnown RBP13.69□□□□□ -0.22
CLCN3P1-202ENST00000609203 APLP2Q06481 763 aa13.68□□□□□ -0.22
CLCN3P1-202ENST00000609203 NCBP3Q53F19 620 aaKnown RBP13.68□□□□□ -0.22
CLCN3P1-202ENST00000609203 BAZ1BQ9UIG0 1483 aaKnown RBP13.67□□□□□ -0.22
CLCN3P1-202ENST00000609203 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
CLCN3P1-202ENST00000609203 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
CLCN3P1-202ENST00000609203 PRKCSHP14314 528 aaPredicted RBP13.58□□□□□ -0.23
CLCN3P1-202ENST00000609203 RTN4Q9NQC3 1192 aaKnown RBP13.57□□□□□ -0.24
CLCN3P1-202ENST00000609203 CCDC88BA6NC98 1476 aa13.54□□□□□ -0.24
CLCN3P1-202ENST00000609203 ERICH6Q7L0X2 663 aa13.53□□□□□ -0.24
CLCN3P1-202ENST00000609203 PPP6R1Q9UPN7 881 aa13.45□□□□□ -0.26
CLCN3P1-202ENST00000609203 ADRA2BP18089 450 aa13.43□□□□□ -0.26
CLCN3P1-202ENST00000609203 NESP48681 1621 aa13.42□□□□□ -0.26
CLCN3P1-202ENST00000609203 CFTRP13569 1480 aa13.34□□□□□ -0.27
CLCN3P1-202ENST00000609203 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.27
CLCN3P1-202ENST00000609203 TRIM41Q8WV44 630 aa13.3□□□□□ -0.28
CLCN3P1-202ENST00000609203 AMER1Q5JTC6 1135 aaPredicted RBP13.29□□□□□ -0.28
CLCN3P1-202ENST00000609203 LAMC3Q9Y6N6 1575 aa13.28□□□□□ -0.28
CLCN3P1-202ENST00000609203 PRDM2Q13029 1718 aa13.24□□□□□ -0.29
CLCN3P1-202ENST00000609203 KIF21AQ7Z4S6 1674 aa13.23□□□□□ -0.29
CLCN3P1-202ENST00000609203 ARXQ96QS3 562 aa13.22□□□□□ -0.29
CLCN3P1-202ENST00000609203 ABCC8Q09428 1581 aa13.2□□□□□ -0.3
CLCN3P1-202ENST00000609203 FANCD2Q9BXW9 1451 aa13.2□□□□□ -0.3
CLCN3P1-202ENST00000609203 PIAS4Q8N2W9 510 aaPredicted RBP13.18□□□□□ -0.3
CLCN3P1-202ENST00000609203 PDS5BQ9NTI5 1447 aa13.14□□□□□ -0.31
CLCN3P1-202ENST00000609203 LOC105371045A0A1W2PR82 267 aa13.13□□□□□ -0.31
CLCN3P1-202ENST00000609203 CEP164Q9UPV0 1460 aa13.11□□□□□ -0.31
CLCN3P1-202ENST00000609203 URB2Q14146 1524 aaKnown RBP13.11□□□□□ -0.31
CLCN3P1-202ENST00000609203 FAM9AQ8IZU1 332 aaPredicted RBP13.1□□□□□ -0.31
CLCN3P1-202ENST00000609203 SYNJ1O43426 1573 aa13.1□□□□□ -0.31
CLCN3P1-202ENST00000609203 CUX1P39880 1505 aa13.1□□□□□ -0.31
CLCN3P1-202ENST00000609203 THOC2Q8NI27 1593 aaKnown RBP13.09□□□□□ -0.31
CLCN3P1-202ENST00000609203 ERCC6Q03468 1493 aa13.08□□□□□ -0.32
CLCN3P1-202ENST00000609203 WRNQ14191 1432 aaPredicted RBP eCLIP13.06□□□□□ -0.32
CLCN3P1-202ENST00000609203 TOPBP1Q92547 1522 aa13.04□□□□□ -0.32
CLCN3P1-202ENST00000609203 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
CLCN3P1-202ENST00000609203 WDR62O43379 1518 aa13.01□□□□□ -0.33
CLCN3P1-202ENST00000609203 TOP2BQ02880 1626 aa13.01□□□□□ -0.33
CLCN3P1-202ENST00000609203 DNMBPQ6XZF7 1577 aa13.01□□□□□ -0.33
CLCN3P1-202ENST00000609203 BIVM-ERCC5R4GMW8 1640 aa13.01□□□□□ -0.33
CLCN3P1-202ENST00000609203 KCNA4P22459 653 aa12.99□□□□□ -0.33
CLCN3P1-202ENST00000609203 TIMELESSQ9UNS1 1208 aa12.98□□□□□ -0.33
CLCN3P1-202ENST00000609203 FGD5Q6ZNL6 1462 aa12.97□□□□□ -0.33
CLCN3P1-202ENST00000609203 CUX2O14529 1486 aa12.96□□□□□ -0.33
CLCN3P1-202ENST00000609203 POLA1P09884 1462 aaPredicted RBP12.96□□□□□ -0.33
CLCN3P1-202ENST00000609203 MSH5O43196 834 aa12.96□□□□□ -0.33
CLCN3P1-202ENST00000609203 RAD54L2Q9Y4B4 1467 aa12.94□□□□□ -0.34
CLCN3P1-202ENST00000609203 EEA1Q15075 1411 aa12.93□□□□□ -0.34
CLCN3P1-202ENST00000609203 SOGA1O94964 1423 aa12.91□□□□□ -0.34
CLCN3P1-202ENST00000609203 TARBP1Q13395 1621 aaKnown RBP12.9□□□□□ -0.34
CLCN3P1-202ENST00000609203 RANGAP1P46060 587 aaPredicted RBP12.9□□□□□ -0.35
CLCN3P1-202ENST00000609203 RUSC2Q8N2Y8 1516 aa12.89□□□□□ -0.35
CLCN3P1-202ENST00000609203 ZNF608Q9ULD9 1512 aaPredicted RBP12.87□□□□□ -0.35
CLCN3P1-202ENST00000609203 WDR97A6NE52 1622 aa12.87□□□□□ -0.35
CLCN3P1-202ENST00000609203 CSRNP3Q8WYN3 585 aa12.83□□□□□ -0.36
CLCN3P1-202ENST00000609203 ABCA10Q8WWZ4 1543 aa12.83□□□□□ -0.36
CLCN3P1-202ENST00000609203 TDRD9Q8NDG6 1382 aaKnown RBP12.82□□□□□ -0.36
CLCN3P1-202ENST00000609203 AQRO60306 1485 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLCN3P1-202ENST00000609203 IFT140Q96RY7 1462 aa12.8□□□□□ -0.36
CLCN3P1-202ENST00000609203 GOLGA3Q08378 1498 aa12.79□□□□□ -0.36
CLCN3P1-202ENST00000609203 KIF21BO75037 1637 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms