RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 AEBP2Q6ZN18 517 aaPredicted RBP25.94■■□□□ 1.74
BRCA1-226ENST00000591534 CHIC1Q5VXU3 224 aa25.39■■□□□ 1.66
BRCA1-226ENST00000591534 NISCHQ9Y2I1 1504 aa23.4■■□□□ 1.34
BRCA1-226ENST00000591534 PHF23Q9BUL5 403 aaPredicted RBP22.49■■□□□ 1.19
BRCA1-226ENST00000591534 SENP3Q9H4L4 574 aaPredicted RBP21.98■■□□□ 1.11
BRCA1-226ENST00000591534 ABCC9O60706 1549 aa21.09■□□□□ 0.97
BRCA1-226ENST00000591534 CCDC180Q9P1Z9 1646 aa20.99■□□□□ 0.95
BRCA1-226ENST00000591534 PLPPR3Q6T4P5 718 aa20.8■□□□□ 0.92
BRCA1-226ENST00000591534 FOXD1Q16676 465 aa20.59■□□□□ 0.89
BRCA1-226ENST00000591534 RB1CC1Q8TDY2 1594 aa20.08■□□□□ 0.81
BRCA1-226ENST00000591534 NACADO15069 1562 aa19.94■□□□□ 0.78
BRCA1-226ENST00000591534 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
BRCA1-226ENST00000591534 DNAJC5BQ9UF47 199 aa19.81■□□□□ 0.76
BRCA1-226ENST00000591534 ADRA2BP18089 450 aa19.71■□□□□ 0.75
BRCA1-226ENST00000591534 PPP6R1Q9UPN7 881 aa19.71■□□□□ 0.75
BRCA1-226ENST00000591534 PABPN1Q86U42 306 aaKnown RBP eCLIP19.67■□□□□ 0.74
BRCA1-226ENST00000591534 MYO15BQ96JP2 1530 aa19.66■□□□□ 0.74
BRCA1-226ENST00000591534 UNC13AQ9UPW8 1703 aa19.41■□□□□ 0.7
BRCA1-226ENST00000591534 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
BRCA1-226ENST00000591534 DCAF1Q9Y4B6 1507 aa19.36■□□□□ 0.69
BRCA1-226ENST00000591534 ZCCHC6Q5VYS8 1495 aaKnown RBP19.36■□□□□ 0.69
BRCA1-226ENST00000591534 SHROOM4Q9ULL8 1493 aa19.29■□□□□ 0.68
BRCA1-226ENST00000591534 PIAS4Q8N2W9 510 aaPredicted RBP19.23■□□□□ 0.67
BRCA1-226ENST00000591534 MSH5O43196 834 aa19.16■□□□□ 0.66
BRCA1-226ENST00000591534 SCRIBQ14160 1630 aa19.11■□□□□ 0.65
BRCA1-226ENST00000591534 CECR2Q9BXF3 1484 aa19.05■□□□□ 0.64
BRCA1-226ENST00000591534 CC2D2AQ9P2K1 1620 aa19.01■□□□□ 0.63
BRCA1-226ENST00000591534 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
BRCA1-226ENST00000591534 POTEDQ86YR6 584 aa18.88■□□□□ 0.61
BRCA1-226ENST00000591534 KCNA4P22459 653 aa18.69■□□□□ 0.58
BRCA1-226ENST00000591534 PPP4R3CPQ6ZMV5 832 aa18.48■□□□□ 0.55
BRCA1-226ENST00000591534 NCAPD3P42695 1498 aa18.42■□□□□ 0.54
BRCA1-226ENST00000591534 DNAJC5Q9H3Z4 198 aa18.37■□□□□ 0.53
BRCA1-226ENST00000591534 ATAD2BQ9ULI0 1458 aa18.32■□□□□ 0.52
BRCA1-226ENST00000591534 ERCC6Q03468 1493 aa18.31■□□□□ 0.52
BRCA1-226ENST00000591534 SMARCA2P51531 1590 aa18.3■□□□□ 0.52
BRCA1-226ENST00000591534 CUX2O14529 1486 aa18.28■□□□□ 0.52
BRCA1-226ENST00000591534 HMGXB3Q12766 1538 aa18.23■□□□□ 0.51
BRCA1-226ENST00000591534 SMARCA4P51532 1647 aa18.23■□□□□ 0.51
BRCA1-226ENST00000591534 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-226ENST00000591534 BAZ1BQ9UIG0 1483 aaKnown RBP18.17■□□□□ 0.5
BRCA1-226ENST00000591534 PEG3Q9GZU2 1588 aa18.08■□□□□ 0.48
BRCA1-226ENST00000591534 NESP48681 1621 aa18.05■□□□□ 0.48
BRCA1-226ENST00000591534 NCBP3Q53F19 620 aaKnown RBP18.03■□□□□ 0.48
BRCA1-226ENST00000591534 EHMT2Q96KQ7 1210 aa18.01■□□□□ 0.47
BRCA1-226ENST00000591534 LAMC3Q9Y6N6 1575 aa18■□□□□ 0.47
BRCA1-226ENST00000591534 MROH2BQ7Z745 1585 aa17.98■□□□□ 0.47
BRCA1-226ENST00000591534 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
BRCA1-226ENST00000591534 NPM3O75607 178 aaKnown RBP17.88■□□□□ 0.45
BRCA1-226ENST00000591534 CADPSQ9ULU8 1353 aa17.88■□□□□ 0.45
BRCA1-226ENST00000591534 THOC2Q8NI27 1593 aaKnown RBP17.86■□□□□ 0.45
BRCA1-226ENST00000591534 SCAF1Q9H7N4 1312 aaKnown RBP17.83■□□□□ 0.44
BRCA1-226ENST00000591534 SLC4A1APQ9BWU0 796 aaKnown RBP17.83■□□□□ 0.44
BRCA1-226ENST00000591534 MAPK8IP2Q13387 824 aaPredicted RBP17.78■□□□□ 0.44
BRCA1-226ENST00000591534 CNKSR2Q8WXI2 1034 aa17.77■□□□□ 0.44
BRCA1-226ENST00000591534 KIF21AQ7Z4S6 1674 aa17.76■□□□□ 0.43
BRCA1-226ENST00000591534 MRC2Q9UBG0 1479 aa17.75■□□□□ 0.43
BRCA1-226ENST00000591534 WIZO95785 1651 aa17.72■□□□□ 0.43
BRCA1-226ENST00000591534 CEP164Q9UPV0 1460 aa17.68■□□□□ 0.42
BRCA1-226ENST00000591534 WDR62O43379 1518 aa17.67■□□□□ 0.42
BRCA1-226ENST00000591534 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.42
BRCA1-226ENST00000591534 FANCD2Q9BXW9 1451 aa17.64■□□□□ 0.41
BRCA1-226ENST00000591534 CFTRP13569 1480 aa17.63■□□□□ 0.41
BRCA1-226ENST00000591534 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
BRCA1-226ENST00000591534 CSRNP3Q8WYN3 585 aa17.54■□□□□ 0.4
BRCA1-226ENST00000591534 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
BRCA1-226ENST00000591534 OSCARQ8IYS5 282 aa17.51■□□□□ 0.39
BRCA1-226ENST00000591534 DMRT2Q9Y5R5 561 aa17.45■□□□□ 0.38
BRCA1-226ENST00000591534 URB2Q14146 1524 aaKnown RBP17.44■□□□□ 0.38
BRCA1-226ENST00000591534 CCDC88BA6NC98 1476 aa17.38■□□□□ 0.37
BRCA1-226ENST00000591534 IFT140Q96RY7 1462 aa17.35■□□□□ 0.37
BRCA1-226ENST00000591534 ABCC8Q09428 1581 aa17.34■□□□□ 0.37
BRCA1-226ENST00000591534 PRDM2Q13029 1718 aa17.3■□□□□ 0.36
BRCA1-226ENST00000591534 RNF216Q9NWF9 866 aaPredicted RBP17.27■□□□□ 0.36
BRCA1-226ENST00000591534 TOPBP1Q92547 1522 aa17.26■□□□□ 0.35
BRCA1-226ENST00000591534 ZNF608Q9ULD9 1512 aaPredicted RBP17.23■□□□□ 0.35
BRCA1-226ENST00000591534 ZBTB22O15209 634 aa17.23■□□□□ 0.35
BRCA1-226ENST00000591534 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
BRCA1-226ENST00000591534 EIF4G3O43432 1585 aaKnown RBP17.12■□□□□ 0.33
BRCA1-226ENST00000591534 FBLN2P98095 1184 aa17.11■□□□□ 0.33
BRCA1-226ENST00000591534 AQRO60306 1485 aaKnown RBP eCLIP17.11■□□□□ 0.334e-10■■■■■ 36.9
BRCA1-226ENST00000591534 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
BRCA1-226ENST00000591534 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
BRCA1-226ENST00000591534 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
BRCA1-226ENST00000591534 ARHGEF11O15085 1522 aa17.09■□□□□ 0.33
BRCA1-226ENST00000591534 POLA1P09884 1462 aaPredicted RBP17.08■□□□□ 0.32
BRCA1-226ENST00000591534 HOXD11P31277 338 aaPredicted RBP17.08■□□□□ 0.32
BRCA1-226ENST00000591534 SOGA1O94964 1423 aa17.07■□□□□ 0.32
BRCA1-226ENST00000591534 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
BRCA1-226ENST00000591534 CYB5RLQ6IPT4 315 aa17.06■□□□□ 0.32
BRCA1-226ENST00000591534 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.31
BRCA1-226ENST00000591534 RAD54L2Q9Y4B4 1467 aa17■□□□□ 0.31
BRCA1-226ENST00000591534 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
BRCA1-226ENST00000591534 WDR97A6NE52 1622 aa16.99■□□□□ 0.31
BRCA1-226ENST00000591534 FGD5Q6ZNL6 1462 aa16.97■□□□□ 0.31
BRCA1-226ENST00000591534 FOXD4L1Q9NU39 408 aa16.95■□□□□ 0.3
BRCA1-226ENST00000591534 CHD1O14646 1710 aa16.95■□□□□ 0.3
BRCA1-226ENST00000591534 TRHP20396 242 aaPredicted RBP16.94■□□□□ 0.3
BRCA1-226ENST00000591534 SNAPC4Q5SXM2 1469 aa16.93■□□□□ 0.3
BRCA1-226ENST00000591534 MAGI1Q96QZ7 1491 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms