RNA–Protein interactions for RNA: ENST00000591383.1

VPS4B-205, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 701 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-205ENST00000591383 CHIC1Q5VXU3 224 aa17.73■□□□□ 0.43
VPS4B-205ENST00000591383 AEBP2Q6ZN18 517 aaPredicted RBP17.54■□□□□ 0.4
VPS4B-205ENST00000591383 PHF23Q9BUL5 403 aaPredicted RBP15.7■□□□□ 0.1
VPS4B-205ENST00000591383 NISCHQ9Y2I1 1504 aa15.25■□□□□ 0.03
VPS4B-205ENST00000591383 SENP3Q9H4L4 574 aaPredicted RBP14.72□□□□□ -0.05
VPS4B-205ENST00000591383 PLPPR3Q6T4P5 718 aa14.67□□□□□ -0.06
VPS4B-205ENST00000591383 ADRA2BP18089 450 aa13.77□□□□□ -0.21
VPS4B-205ENST00000591383 PPP6R1Q9UPN7 881 aa13.65□□□□□ -0.22
VPS4B-205ENST00000591383 FOXD1Q16676 465 aa13.62□□□□□ -0.23
VPS4B-205ENST00000591383 CCDC180Q9P1Z9 1646 aa13.58□□□□□ -0.24
VPS4B-205ENST00000591383 KCNA4P22459 653 aa13.48□□□□□ -0.25
VPS4B-205ENST00000591383 EHMT2Q96KQ7 1210 aa13.31□□□□□ -0.28
VPS4B-205ENST00000591383 ABCC9O60706 1549 aa13.12□□□□□ -0.31
VPS4B-205ENST00000591383 PPP4R3CPQ6ZMV5 832 aa13.03□□□□□ -0.32
VPS4B-205ENST00000591383 PIAS4Q8N2W9 510 aaPredicted RBP12.98□□□□□ -0.33
VPS4B-205ENST00000591383 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
VPS4B-205ENST00000591383 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
VPS4B-205ENST00000591383 NCBP3Q53F19 620 aaKnown RBP12.84□□□□□ -0.35
VPS4B-205ENST00000591383 ZCCHC6Q5VYS8 1495 aaKnown RBP12.78□□□□□ -0.36
VPS4B-205ENST00000591383 NPM3O75607 178 aaKnown RBP12.69□□□□□ -0.38
VPS4B-205ENST00000591383 RB1CC1Q8TDY2 1594 aa12.69□□□□□ -0.38
VPS4B-205ENST00000591383 NACADO15069 1562 aa12.66□□□□□ -0.38
VPS4B-205ENST00000591383 DCAF8L2P0C7V8 631 aa12.65□□□□□ -0.38
VPS4B-205ENST00000591383 DCAF1Q9Y4B6 1507 aa12.61□□□□□ -0.39
VPS4B-205ENST00000591383 MYO15BQ96JP2 1530 aa12.58□□□□□ -0.4
VPS4B-205ENST00000591383 CNKSR2Q8WXI2 1034 aa12.51□□□□□ -0.41
VPS4B-205ENST00000591383 UNC13AQ9UPW8 1703 aa12.45□□□□□ -0.42
VPS4B-205ENST00000591383 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
VPS4B-205ENST00000591383 SCAF1Q9H7N4 1312 aaKnown RBP12.43□□□□□ -0.42
VPS4B-205ENST00000591383 ZBTB22O15209 634 aa12.43□□□□□ -0.42
VPS4B-205ENST00000591383 BICRAQ9NZM4 1560 aa12.27□□□□□ -0.44
VPS4B-205ENST00000591383 MSH5O43196 834 aa12.26□□□□□ -0.45
VPS4B-205ENST00000591383 MAPK8IP2Q13387 824 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-205ENST00000591383 PABPN1Q86U42 306 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS4B-205ENST00000591383 DNAJC5BQ9UF47 199 aa12.21□□□□□ -0.45
VPS4B-205ENST00000591383 SHROOM4Q9ULL8 1493 aa12.21□□□□□ -0.46
VPS4B-205ENST00000591383 FOXD4L1Q9NU39 408 aa12.19□□□□□ -0.46
VPS4B-205ENST00000591383 RNF216Q9NWF9 866 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-205ENST00000591383 EIF4G1Q04637 1599 aaKnown RBP11.96□□□□□ -0.5
VPS4B-205ENST00000591383 HOXD11P31277 338 aaPredicted RBP11.9□□□□□ -0.5
VPS4B-205ENST00000591383 DMRT2Q9Y5R5 561 aa11.88□□□□□ -0.51
VPS4B-205ENST00000591383 CC2D2AQ9P2K1 1620 aa11.88□□□□□ -0.51
VPS4B-205ENST00000591383 SMARCA4P51532 1647 aa11.87□□□□□ -0.51
VPS4B-205ENST00000591383 CECR2Q9BXF3 1484 aa11.86□□□□□ -0.51
VPS4B-205ENST00000591383 BAZ1AQ9NRL2 1556 aaPredicted RBP11.85□□□□□ -0.51
VPS4B-205ENST00000591383 SLC4A2P04920 1241 aa11.85□□□□□ -0.51
VPS4B-205ENST00000591383 MROH2BQ7Z745 1585 aa11.78□□□□□ -0.52
VPS4B-205ENST00000591383 SMARCA2P51531 1590 aa11.73□□□□□ -0.53
VPS4B-205ENST00000591383 RTN4Q9NQC3 1192 aaKnown RBP11.71□□□□□ -0.53
VPS4B-205ENST00000591383 ATXN8OSP0DMR3 200 aa11.7□□□□□ -0.54
VPS4B-205ENST00000591383 WIZO95785 1651 aa11.7□□□□□ -0.54
VPS4B-205ENST00000591383 ATAD2BQ9ULI0 1458 aa11.7□□□□□ -0.54
VPS4B-205ENST00000591383 PEG3Q9GZU2 1588 aa11.69□□□□□ -0.54
VPS4B-205ENST00000591383 MYCNP04198 464 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-205ENST00000591383 HMGXB3Q12766 1538 aa11.68□□□□□ -0.54
VPS4B-205ENST00000591383 AMER1Q5JTC6 1135 aaPredicted RBP11.67□□□□□ -0.54
VPS4B-205ENST00000591383 BAZ1BQ9UIG0 1483 aaKnown RBP11.67□□□□□ -0.54
VPS4B-205ENST00000591383 RSF1Q96T23 1441 aaPredicted RBP11.65□□□□□ -0.54
VPS4B-205ENST00000591383 NCAPD3P42695 1498 aa11.62□□□□□ -0.55
VPS4B-205ENST00000591383 SLC24A1O60721 1099 aa11.6□□□□□ -0.55
VPS4B-205ENST00000591383 FKBP8Q14318 412 aa11.58□□□□□ -0.56
VPS4B-205ENST00000591383 TOP2AP11388 1531 aaKnown RBP11.58□□□□□ -0.56
VPS4B-205ENST00000591383 SUPT5HO00267 1087 aaKnown RBP11.48□□□□□ -0.57
VPS4B-205ENST00000591383 NESP48681 1621 aa11.38□□□□□ -0.59
VPS4B-205ENST00000591383 LAMC3Q9Y6N6 1575 aa11.38□□□□□ -0.59
VPS4B-205ENST00000591383 ATF5Q9Y2D1 282 aaPredicted RBP11.38□□□□□ -0.59
VPS4B-205ENST00000591383 CCDC88BA6NC98 1476 aa11.38□□□□□ -0.59
VPS4B-205ENST00000591383 PRDM2Q13029 1718 aa11.37□□□□□ -0.59
VPS4B-205ENST00000591383 KIF21AQ7Z4S6 1674 aa11.33□□□□□ -0.6
VPS4B-205ENST00000591383 ERCC6Q03468 1493 aa11.32□□□□□ -0.6
VPS4B-205ENST00000591383 DCAF8L1A6NGE4 600 aa11.31□□□□□ -0.6
VPS4B-205ENST00000591383 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS4B-205ENST00000591383 CADPSQ9ULU8 1353 aa11.3□□□□□ -0.6
VPS4B-205ENST00000591383 CFTRP13569 1480 aa11.28□□□□□ -0.6
VPS4B-205ENST00000591383 SAMD1Q6SPF0 538 aaPredicted RBP11.26□□□□□ -0.61
VPS4B-205ENST00000591383 PDS5BQ9NTI5 1447 aa11.26□□□□□ -0.61
VPS4B-205ENST00000591383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-205ENST00000591383 HNRNPUL2Q1KMD3 747 aaKnown RBP11.25□□□□□ -0.61
VPS4B-205ENST00000591383 CEP164Q9UPV0 1460 aa11.25□□□□□ -0.61
VPS4B-205ENST00000591383 FANCD2Q9BXW9 1451 aa11.24□□□□□ -0.61
VPS4B-205ENST00000591383 U3KPZ7 1027 aaPredicted RBP11.23□□□□□ -0.61
VPS4B-205ENST00000591383 THOC2Q8NI27 1593 aaKnown RBP11.23□□□□□ -0.61
VPS4B-205ENST00000591383 MRC2Q9UBG0 1479 aa11.19□□□□□ -0.62
VPS4B-205ENST00000591383 WDR62O43379 1518 aa11.14□□□□□ -0.63
VPS4B-205ENST00000591383 URB2Q14146 1524 aaKnown RBP11.12□□□□□ -0.63
VPS4B-205ENST00000591383 DNMBPQ6XZF7 1577 aa11.11□□□□□ -0.63
VPS4B-205ENST00000591383 CUX2O14529 1486 aa11.1□□□□□ -0.63
VPS4B-205ENST00000591383 ABCC8Q09428 1581 aa11.09□□□□□ -0.63
VPS4B-205ENST00000591383 ZNF219Q9P2Y4 722 aaPredicted RBP11.08□□□□□ -0.64
VPS4B-205ENST00000591383 TOPBP1Q92547 1522 aa11.08□□□□□ -0.64
VPS4B-205ENST00000591383 CUX1P39880 1505 aa11.06□□□□□ -0.64
VPS4B-205ENST00000591383 SYNJ1O43426 1573 aa11.04□□□□□ -0.64
VPS4B-205ENST00000591383 BIVM-ERCC5R4GMW8 1640 aa11.03□□□□□ -0.64
VPS4B-205ENST00000591383 WRNQ14191 1432 aaPredicted RBP eCLIP11.02□□□□□ -0.64
VPS4B-205ENST00000591383 TOP2BQ02880 1626 aa11.02□□□□□ -0.65
VPS4B-205ENST00000591383 FGD5Q6ZNL6 1462 aa11□□□□□ -0.65
VPS4B-205ENST00000591383 POLA1P09884 1462 aaPredicted RBP10.99□□□□□ -0.65
VPS4B-205ENST00000591383 APLP2Q06481 763 aa10.97□□□□□ -0.65
VPS4B-205ENST00000591383 FBXO3Q9UK99 471 aa10.97□□□□□ -0.65
VPS4B-205ENST00000591383 WDR97A6NE52 1622 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms