RNA–Protein interactions for RNA: ENST00000581220.1

RIOK3-204, Transcript of RIO kinase 3, humanhuman

TSL 2

Gene RIOK3, Length 2,384 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIOK3-204ENST00000581220 NISCHQ9Y2I1 1504 aa16.85■□□□□ 0.29
RIOK3-204ENST00000581220 ABCC9O60706 1549 aa14.92□□□□□ -0.02
RIOK3-204ENST00000581220 DNAJC5Q9H3Z4 198 aa14.91□□□□□ -0.02
RIOK3-204ENST00000581220 DNAJC5BQ9UF47 199 aa14.84□□□□□ -0.03
RIOK3-204ENST00000581220 CCDC180Q9P1Z9 1646 aa14.65□□□□□ -0.06
RIOK3-204ENST00000581220 SHROOM4Q9ULL8 1493 aa14.58□□□□□ -0.08
RIOK3-204ENST00000581220 SUPT5HO00267 1087 aaKnown RBP14.45□□□□□ -0.1
RIOK3-204ENST00000581220 ZCCHC6Q5VYS8 1495 aaKnown RBP14.29□□□□□ -0.12
RIOK3-204ENST00000581220 RB1CC1Q8TDY2 1594 aa14.28□□□□□ -0.12
RIOK3-204ENST00000581220 HRCP23327 699 aa14.17□□□□□ -0.14
RIOK3-204ENST00000581220 CHIC1Q5VXU3 224 aa14.14□□□□□ -0.15
RIOK3-204ENST00000581220 AEBP2Q6ZN18 517 aaPredicted RBP14.11□□□□□ -0.15
RIOK3-204ENST00000581220 MYO15BQ96JP2 1530 aa14.1□□□□□ -0.15
RIOK3-204ENST00000581220 NACADO15069 1562 aa14□□□□□ -0.17
RIOK3-204ENST00000581220 PCGF6Q9BYE7 350 aa14□□□□□ -0.17
RIOK3-204ENST00000581220 CUX2O14529 1486 aa13.98□□□□□ -0.17
RIOK3-204ENST00000581220 DCAF8L2P0C7V8 631 aa13.98□□□□□ -0.17
RIOK3-204ENST00000581220 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
RIOK3-204ENST00000581220 CECR2Q9BXF3 1484 aa13.81□□□□□ -0.2
RIOK3-204ENST00000581220 PPARGC1BQ86YN6 1023 aaKnown RBP13.79□□□□□ -0.2
RIOK3-204ENST00000581220 UNC13AQ9UPW8 1703 aa13.77□□□□□ -0.21
RIOK3-204ENST00000581220 LOC105371045A0A1W2PR82 267 aa13.74□□□□□ -0.21
RIOK3-204ENST00000581220 BICRAQ9NZM4 1560 aa13.72□□□□□ -0.21
RIOK3-204ENST00000581220 CC2D2AQ9P2K1 1620 aa13.71□□□□□ -0.21
RIOK3-204ENST00000581220 TRIM26Q12899 539 aaPredicted RBP13.69□□□□□ -0.22
RIOK3-204ENST00000581220 ZEB1P37275 1124 aaPredicted RBP13.55□□□□□ -0.24
RIOK3-204ENST00000581220 EIF4G1Q04637 1599 aaKnown RBP13.47□□□□□ -0.25
RIOK3-204ENST00000581220 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
RIOK3-204ENST00000581220 RSF1Q96T23 1441 aaPredicted RBP13.43□□□□□ -0.26
RIOK3-204ENST00000581220 PABPN1Q86U42 306 aaKnown RBP eCLIP13.42□□□□□ -0.26
RIOK3-204ENST00000581220 SCRIBQ14160 1630 aa13.37□□□□□ -0.27
RIOK3-204ENST00000581220 PELP1Q8IZL8 1130 aaKnown RBP13.35□□□□□ -0.27
RIOK3-204ENST00000581220 FAM9AQ8IZU1 332 aaPredicted RBP13.34□□□□□ -0.27
RIOK3-204ENST00000581220 EHMT2Q96KQ7 1210 aa13.22□□□□□ -0.29
RIOK3-204ENST00000581220 SCAF1Q9H7N4 1312 aaKnown RBP13.19□□□□□ -0.3
RIOK3-204ENST00000581220 ERCC6Q03468 1493 aa13.14□□□□□ -0.31
RIOK3-204ENST00000581220 MROH2BQ7Z745 1585 aa13.1□□□□□ -0.31
RIOK3-204ENST00000581220 CCER1Q8TC90 406 aaPredicted RBP13.09□□□□□ -0.31
RIOK3-204ENST00000581220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.06□□□□□ -0.32
RIOK3-204ENST00000581220 WIZO95785 1651 aa13.06□□□□□ -0.32
RIOK3-204ENST00000581220 THOC2Q8NI27 1593 aaKnown RBP13.02□□□□□ -0.32
RIOK3-204ENST00000581220 ACIN1Q9UKV3 1341 aaKnown RBP13.02□□□□□ -0.32
RIOK3-204ENST00000581220 BAZ1AQ9NRL2 1556 aaPredicted RBP13□□□□□ -0.33
RIOK3-204ENST00000581220 CENPBP07199 599 aaPredicted RBP12.97□□□□□ -0.33
RIOK3-204ENST00000581220 DIEXFQ68CQ4 756 aaKnown RBP12.96□□□□□ -0.33
RIOK3-204ENST00000581220 NEUROD1Q13562 356 aa12.95□□□□□ -0.34
RIOK3-204ENST00000581220 WRNQ14191 1432 aaPredicted RBP eCLIP12.93□□□□□ -0.34
RIOK3-204ENST00000581220 GTF3C3Q9Y5Q9 886 aa12.88□□□□□ -0.35
RIOK3-204ENST00000581220 CEP162Q5TB80 1403 aa12.87□□□□□ -0.35
RIOK3-204ENST00000581220 TOP2AP11388 1531 aaKnown RBP12.86□□□□□ -0.35
RIOK3-204ENST00000581220 TTBK1Q5TCY1 1321 aaPredicted RBP12.86□□□□□ -0.35
RIOK3-204ENST00000581220 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
RIOK3-204ENST00000581220 CCDC88BA6NC98 1476 aa12.85□□□□□ -0.35
RIOK3-204ENST00000581220 TNIKQ9UKE5 1360 aa12.85□□□□□ -0.35
RIOK3-204ENST00000581220 EEA1Q15075 1411 aa12.82□□□□□ -0.36
RIOK3-204ENST00000581220 NCAPD3P42695 1498 aa12.81□□□□□ -0.36
RIOK3-204ENST00000581220 ZNF316A6NFI3 1004 aaPredicted RBP12.8□□□□□ -0.36
RIOK3-204ENST00000581220 UBTFP17480 764 aaKnown RBP12.79□□□□□ -0.36
RIOK3-204ENST00000581220 SOGA1O94964 1423 aa12.79□□□□□ -0.36
RIOK3-204ENST00000581220 SMARCA2P51531 1590 aa12.79□□□□□ -0.36
RIOK3-204ENST00000581220 MYT1Q01538 1121 aa12.79□□□□□ -0.36
RIOK3-204ENST00000581220 CSRNP3Q8WYN3 585 aa12.79□□□□□ -0.36
RIOK3-204ENST00000581220 RIMBP3CA6NJZ7 1639 aa12.78□□□□□ -0.36
RIOK3-204ENST00000581220 RIMBP3BA6NNM3 1639 aa12.78□□□□□ -0.36
RIOK3-204ENST00000581220 SMARCA4P51532 1647 aa12.78□□□□□ -0.36
RIOK3-204ENST00000581220 RIMBP3Q9UFD9 1639 aa12.78□□□□□ -0.36
RIOK3-204ENST00000581220 LAMC3Q9Y6N6 1575 aa12.78□□□□□ -0.36
RIOK3-204ENST00000581220 GOLGA3Q08378 1498 aa12.73□□□□□ -0.37
RIOK3-204ENST00000581220 HMGXB3Q12766 1538 aa12.73□□□□□ -0.37
RIOK3-204ENST00000581220 OSCARQ8IYS5 282 aa12.71□□□□□ -0.37
RIOK3-204ENST00000581220 RUSC2Q8N2Y8 1516 aa12.7□□□□□ -0.38
RIOK3-204ENST00000581220 YTHDC1Q96MU7 727 aaKnown RBP12.67□□□□□ -0.38
RIOK3-204ENST00000581220 ILDR1Q86SU0 546 aaPredicted RBP12.65□□□□□ -0.38
RIOK3-204ENST00000581220 WDR62O43379 1518 aa12.65□□□□□ -0.38
RIOK3-204ENST00000581220 HNRNPUL2Q1KMD3 747 aaKnown RBP12.64□□□□□ -0.39
RIOK3-204ENST00000581220 CEP164Q9UPV0 1460 aa12.63□□□□□ -0.39
RIOK3-204ENST00000581220 MIER1Q8N108 512 aa12.62□□□□□ -0.39
RIOK3-204ENST00000581220 APLP2Q06481 763 aa12.61□□□□□ -0.39
RIOK3-204ENST00000581220 PDS5BQ9NTI5 1447 aa12.6□□□□□ -0.39
RIOK3-204ENST00000581220 KIF21BO75037 1637 aa12.6□□□□□ -0.39
RIOK3-204ENST00000581220 CLIP1P30622 1438 aa12.59□□□□□ -0.39
RIOK3-204ENST00000581220 ARHGEF11O15085 1522 aa12.59□□□□□ -0.39
RIOK3-204ENST00000581220 VPS8Q8N3P4 1428 aa12.57□□□□□ -0.4
RIOK3-204ENST00000581220 MRC2Q9UBG0 1479 aa12.56□□□□□ -0.4
RIOK3-204ENST00000581220 BAZ1BQ9UIG0 1483 aaKnown RBP12.54□□□□□ -0.4
RIOK3-204ENST00000581220 KIF21AQ7Z4S6 1674 aa12.54□□□□□ -0.4
RIOK3-204ENST00000581220 SYNJ1O43426 1573 aa12.53□□□□□ -0.4
RIOK3-204ENST00000581220 PEG3Q9GZU2 1588 aa12.51□□□□□ -0.41
RIOK3-204ENST00000581220 CLSPNQ9HAW4 1339 aa12.49□□□□□ -0.41
RIOK3-204ENST00000581220 ERCC6L2Q5T890 1561 aa12.47□□□□□ -0.41
RIOK3-204ENST00000581220 RAPGEF2Q9Y4G8 1499 aa12.47□□□□□ -0.41
RIOK3-204ENST00000581220 RANGAP1P46060 587 aaPredicted RBP12.45□□□□□ -0.42
RIOK3-204ENST00000581220 NESP48681 1621 aa12.44□□□□□ -0.42
RIOK3-204ENST00000581220 ATAD2BQ9ULI0 1458 aa12.42□□□□□ -0.42
RIOK3-204ENST00000581220 DHX57Q6P158 1386 aaKnown RBP12.4□□□□□ -0.42
RIOK3-204ENST00000581220 TOP2BQ02880 1626 aa12.38□□□□□ -0.43
RIOK3-204ENST00000581220 TRHP20396 242 aaPredicted RBP12.36□□□□□ -0.43
RIOK3-204ENST00000581220 ERICH3Q5RHP9 1530 aa12.36□□□□□ -0.43
RIOK3-204ENST00000581220 ARAP1Q96P48 1450 aa12.35□□□□□ -0.43
RIOK3-204ENST00000581220 SUPT16HQ9Y5B9 1047 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms