RNA–Protein interactions for RNA: ENST00000578887.1

RBFOX3-201, Transcript of RNA binding fox-1 homolog 3, humanhuman

TSL 2

Gene RBFOX3, Length 2,694 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3-201ENST00000578887 NISCHQ9Y2I1 1504 aa28.24■■■□□ 2.11
RBFOX3-201ENST00000578887 CCDC180Q9P1Z9 1646 aa24.51■■□□□ 1.51
RBFOX3-201ENST00000578887 SHROOM4Q9ULL8 1493 aa24.17■■□□□ 1.46
RBFOX3-201ENST00000578887 SUPT5HO00267 1087 aaKnown RBP23.89■■□□□ 1.41
RBFOX3-201ENST00000578887 ZCCHC6Q5VYS8 1495 aaKnown RBP23.74■■□□□ 1.39
RBFOX3-201ENST00000578887 MYO15BQ96JP2 1530 aa23.47■■□□□ 1.35
RBFOX3-201ENST00000578887 DCAF8L2P0C7V8 631 aa23.45■■□□□ 1.34
RBFOX3-201ENST00000578887 HRCP23327 699 aa23.43■■□□□ 1.34
RBFOX3-201ENST00000578887 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
RBFOX3-201ENST00000578887 PCGF6Q9BYE7 350 aa23.25■■□□□ 1.31
RBFOX3-201ENST00000578887 DCAF1Q9Y4B6 1507 aa23.24■■□□□ 1.31
RBFOX3-201ENST00000578887 ABCC9O60706 1549 aa23.24■■□□□ 1.31
RBFOX3-201ENST00000578887 PPARGC1BQ86YN6 1023 aaKnown RBP23.2■■□□□ 1.3
RBFOX3-201ENST00000578887 SLC24A1O60721 1099 aa23.02■■□□□ 1.28
RBFOX3-201ENST00000578887 LOC105371045A0A1W2PR82 267 aa22.86■■□□□ 1.25
RBFOX3-201ENST00000578887 NACADO15069 1562 aa22.8■■□□□ 1.24
RBFOX3-201ENST00000578887 SCRIBQ14160 1630 aa22.71■■□□□ 1.23
RBFOX3-201ENST00000578887 RB1CC1Q8TDY2 1594 aa22.6■■□□□ 1.21
RBFOX3-201ENST00000578887 TRIM26Q12899 539 aaPredicted RBP22.43■■□□□ 1.18
RBFOX3-201ENST00000578887 UNC13AQ9UPW8 1703 aa22.28■■□□□ 1.16
RBFOX3-201ENST00000578887 EHMT2Q96KQ7 1210 aa22.14■■□□□ 1.14
RBFOX3-201ENST00000578887 FAM9AQ8IZU1 332 aaPredicted RBP22.14■■□□□ 1.13
RBFOX3-201ENST00000578887 SCAF1Q9H7N4 1312 aaKnown RBP22.06■■□□□ 1.12
RBFOX3-201ENST00000578887 CECR2Q9BXF3 1484 aa22.03■■□□□ 1.12
RBFOX3-201ENST00000578887 TRIM41Q8WV44 630 aa22.02■■□□□ 1.12
RBFOX3-201ENST00000578887 BICRAQ9NZM4 1560 aa22■■□□□ 1.11
RBFOX3-201ENST00000578887 RSF1Q96T23 1441 aaPredicted RBP21.99■■□□□ 1.11
RBFOX3-201ENST00000578887 PABPN1Q86U42 306 aaKnown RBP eCLIP21.99■■□□□ 1.11
RBFOX3-201ENST00000578887 ZEB1P37275 1124 aaPredicted RBP21.97■■□□□ 1.11
RBFOX3-201ENST00000578887 MROH2BQ7Z745 1585 aa21.89■■□□□ 1.09
RBFOX3-201ENST00000578887 BAZ1AQ9NRL2 1556 aaPredicted RBP21.77■■□□□ 1.08
RBFOX3-201ENST00000578887 WIZO95785 1651 aa21.74■■□□□ 1.07
RBFOX3-201ENST00000578887 PELP1Q8IZL8 1130 aaKnown RBP21.74■■□□□ 1.07
RBFOX3-201ENST00000578887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.71■■□□□ 1.07
RBFOX3-201ENST00000578887 SMARCA4P51532 1647 aa21.71■■□□□ 1.07
RBFOX3-201ENST00000578887 NEUROD1Q13562 356 aa21.6■■□□□ 1.05
RBFOX3-201ENST00000578887 CCER1Q8TC90 406 aaPredicted RBP21.52■■□□□ 1.04
RBFOX3-201ENST00000578887 ACIN1Q9UKV3 1341 aaKnown RBP21.52■■□□□ 1.04
RBFOX3-201ENST00000578887 TTBK1Q5TCY1 1321 aaPredicted RBP21.52■■□□□ 1.03
RBFOX3-201ENST00000578887 TOP2AP11388 1531 aaKnown RBP21.42■■□□□ 1.02
RBFOX3-201ENST00000578887 GTF3C3Q9Y5Q9 886 aa21.4■■□□□ 1.02
RBFOX3-201ENST00000578887 DIEXFQ68CQ4 756 aaKnown RBP21.38■■□□□ 1.01
RBFOX3-201ENST00000578887 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
RBFOX3-201ENST00000578887 EIF4G1Q04637 1599 aaKnown RBP21.31■■□□□ 1
RBFOX3-201ENST00000578887 ATAD2BQ9ULI0 1458 aa21.31■■□□□ 1
RBFOX3-201ENST00000578887 SMARCA2P51531 1590 aa21.27■■□□□ 1
RBFOX3-201ENST00000578887 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
RBFOX3-201ENST00000578887 BAZ1BQ9UIG0 1483 aaKnown RBP21.2■□□□□ 0.98
RBFOX3-201ENST00000578887 CENPBP07199 599 aaPredicted RBP21.16■□□□□ 0.98
RBFOX3-201ENST00000578887 ABCC8Q09428 1581 aa21.14■□□□□ 0.98
RBFOX3-201ENST00000578887 YTHDC1Q96MU7 727 aaKnown RBP21.12■□□□□ 0.97
RBFOX3-201ENST00000578887 CEP162Q5TB80 1403 aa21.08■□□□□ 0.97
RBFOX3-201ENST00000578887 SOGA1O94964 1423 aa21.06■□□□□ 0.96
RBFOX3-201ENST00000578887 NCAPD3P42695 1498 aa21.06■□□□□ 0.96
RBFOX3-201ENST00000578887 WRNQ14191 1432 aaPredicted RBP eCLIP21.03■□□□□ 0.96
RBFOX3-201ENST00000578887 HMGXB3Q12766 1538 aa21.03■□□□□ 0.96
RBFOX3-201ENST00000578887 ZNF316A6NFI3 1004 aaPredicted RBP21.01■□□□□ 0.95
RBFOX3-201ENST00000578887 CC2D2AQ9P2K1 1620 aa21■□□□□ 0.95
RBFOX3-201ENST00000578887 RUSC2Q8N2Y8 1516 aa20.99■□□□□ 0.95
RBFOX3-201ENST00000578887 MIER1Q8N108 512 aa20.95■□□□□ 0.94
RBFOX3-201ENST00000578887 UBTFP17480 764 aaKnown RBP20.95■□□□□ 0.94
RBFOX3-201ENST00000578887 PLPPR3Q6T4P5 718 aa20.94■□□□□ 0.94
RBFOX3-201ENST00000578887 DAXXQ9UER7 740 aaPredicted RBP20.91■□□□□ 0.94
RBFOX3-201ENST00000578887 HNRNPUL2Q1KMD3 747 aaKnown RBP20.91■□□□□ 0.94
RBFOX3-201ENST00000578887 TNIKQ9UKE5 1360 aa20.9■□□□□ 0.94
RBFOX3-201ENST00000578887 CSRNP3Q8WYN3 585 aa20.87■□□□□ 0.93
RBFOX3-201ENST00000578887 RANGAP1P46060 587 aaPredicted RBP20.69■□□□□ 0.9
RBFOX3-201ENST00000578887 GOLGA3Q08378 1498 aa20.67■□□□□ 0.9
RBFOX3-201ENST00000578887 CFTRP13569 1480 aa20.65■□□□□ 0.9
RBFOX3-201ENST00000578887 MYT1Q01538 1121 aa20.65■□□□□ 0.9
RBFOX3-201ENST00000578887 RTN4Q9NQC3 1192 aaKnown RBP20.65■□□□□ 0.9
RBFOX3-201ENST00000578887 SYNJ1O43426 1573 aa20.64■□□□□ 0.89
RBFOX3-201ENST00000578887 EEA1Q15075 1411 aa20.62■□□□□ 0.89
RBFOX3-201ENST00000578887 PRKCSHP14314 528 aaPredicted RBP20.6■□□□□ 0.89
RBFOX3-201ENST00000578887 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.89
RBFOX3-201ENST00000578887 CADPSQ9ULU8 1353 aa20.56■□□□□ 0.88
RBFOX3-201ENST00000578887 CLIP1P30622 1438 aa20.56■□□□□ 0.88
RBFOX3-201ENST00000578887 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
RBFOX3-201ENST00000578887 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
RBFOX3-201ENST00000578887 CEP164Q9UPV0 1460 aa20.48■□□□□ 0.87
RBFOX3-201ENST00000578887 VPS8Q8N3P4 1428 aa20.47■□□□□ 0.87
RBFOX3-201ENST00000578887 NESP48681 1621 aa20.46■□□□□ 0.87
RBFOX3-201ENST00000578887 RAPGEF2Q9Y4G8 1499 aa20.46■□□□□ 0.87
RBFOX3-201ENST00000578887 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.86
RBFOX3-201ENST00000578887 CUX1P39880 1505 aa20.45■□□□□ 0.86
RBFOX3-201ENST00000578887 APLP2Q06481 763 aa20.44■□□□□ 0.86
RBFOX3-201ENST00000578887 SUPT16HQ9Y5B9 1047 aaKnown RBP20.43■□□□□ 0.86
RBFOX3-201ENST00000578887 KIF21BO75037 1637 aa20.4■□□□□ 0.86
RBFOX3-201ENST00000578887 DHX57Q6P158 1386 aaKnown RBP20.38■□□□□ 0.85
RBFOX3-201ENST00000578887 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
RBFOX3-201ENST00000578887 KANK4Q5T7N3 995 aaPredicted RBP20.34■□□□□ 0.85
RBFOX3-201ENST00000578887 NCBP3Q53F19 620 aaKnown RBP20.33■□□□□ 0.85
RBFOX3-201ENST00000578887 KCNH8Q96L42 1107 aa20.33■□□□□ 0.84
RBFOX3-201ENST00000578887 LAMC3Q9Y6N6 1575 aa20.33■□□□□ 0.84
RBFOX3-201ENST00000578887 TSHZ2Q9NRE2 1034 aa20.26■□□□□ 0.83
RBFOX3-201ENST00000578887 ITGAEP38570 1179 aa20.21■□□□□ 0.83
RBFOX3-201ENST00000578887 FGD5Q6ZNL6 1462 aa20.2■□□□□ 0.82
RBFOX3-201ENST00000578887 KIF21AQ7Z4S6 1674 aa20.19■□□□□ 0.82
RBFOX3-201ENST00000578887 ARAP1Q96P48 1450 aa20.18■□□□□ 0.82
RBFOX3-201ENST00000578887 DNMBPQ6XZF7 1577 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms