RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 AEBP2Q6ZN18 517 aaPredicted RBP23.85■■□□□ 1.41
VPS53-214ENST00000572607 CHIC1Q5VXU3 224 aa22.6■■□□□ 1.21
VPS53-214ENST00000572607 SENP3Q9H4L4 574 aaPredicted RBP20.37■□□□□ 0.85
VPS53-214ENST00000572607 PHF23Q9BUL5 403 aaPredicted RBP20.11■□□□□ 0.81
VPS53-214ENST00000572607 NISCHQ9Y2I1 1504 aa19.67■□□□□ 0.74
VPS53-214ENST00000572607 FOXD1Q16676 465 aa18.99■□□□□ 0.63
VPS53-214ENST00000572607 PLPPR3Q6T4P5 718 aa18.02■□□□□ 0.48
VPS53-214ENST00000572607 ABCC9O60706 1549 aa17.91■□□□□ 0.46
VPS53-214ENST00000572607 MSH5O43196 834 aa17.82■□□□□ 0.44
VPS53-214ENST00000572607 CCDC180Q9P1Z9 1646 aa17.72■□□□□ 0.43
VPS53-214ENST00000572607 PIAS4Q8N2W9 510 aaPredicted RBP17.7■□□□□ 0.42
VPS53-214ENST00000572607 PPP6R1Q9UPN7 881 aa17.69■□□□□ 0.42
VPS53-214ENST00000572607 ADRA2BP18089 450 aa17.62■□□□□ 0.41
VPS53-214ENST00000572607 POTEDQ86YR6 584 aa17.5■□□□□ 0.39
VPS53-214ENST00000572607 DNAJC5BQ9UF47 199 aa17.12■□□□□ 0.33
VPS53-214ENST00000572607 RB1CC1Q8TDY2 1594 aa16.92■□□□□ 0.3
VPS53-214ENST00000572607 NACADO15069 1562 aa16.76■□□□□ 0.27
VPS53-214ENST00000572607 UNC13AQ9UPW8 1703 aa16.72■□□□□ 0.27
VPS53-214ENST00000572607 PABPN1Q86U42 306 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS53-214ENST00000572607 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.24
VPS53-214ENST00000572607 DCAF8L2P0C7V8 631 aa16.56■□□□□ 0.24
VPS53-214ENST00000572607 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
VPS53-214ENST00000572607 ZCCHC6Q5VYS8 1495 aaKnown RBP16.36■□□□□ 0.21
VPS53-214ENST00000572607 DCAF1Q9Y4B6 1507 aa16.28■□□□□ 0.2
VPS53-214ENST00000572607 CC2D2AQ9P2K1 1620 aa16.22■□□□□ 0.19
VPS53-214ENST00000572607 MAPK8IP2Q13387 824 aaPredicted RBP16.21■□□□□ 0.19
VPS53-214ENST00000572607 SHROOM4Q9ULL8 1493 aa16.2■□□□□ 0.18
VPS53-214ENST00000572607 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
VPS53-214ENST00000572607 DMRT2Q9Y5R5 561 aa16.15■□□□□ 0.18
VPS53-214ENST00000572607 CECR2Q9BXF3 1484 aa16.15■□□□□ 0.18
VPS53-214ENST00000572607 EIF4G1Q04637 1599 aaKnown RBP16.11■□□□□ 0.17
VPS53-214ENST00000572607 SCRIBQ14160 1630 aa16.09■□□□□ 0.17
VPS53-214ENST00000572607 DNAJC5Q9H3Z4 198 aa15.82■□□□□ 0.12
VPS53-214ENST00000572607 PPP4R3CPQ6ZMV5 832 aa15.78■□□□□ 0.12
VPS53-214ENST00000572607 HOXD11P31277 338 aaPredicted RBP15.55■□□□□ 0.08
VPS53-214ENST00000572607 CUX2O14529 1486 aa15.53■□□□□ 0.08
VPS53-214ENST00000572607 CNKSR2Q8WXI2 1034 aa15.52■□□□□ 0.08
VPS53-214ENST00000572607 NCAPD3P42695 1498 aa15.48■□□□□ 0.07
VPS53-214ENST00000572607 DCAF8L1A6NGE4 600 aa15.43■□□□□ 0.06
VPS53-214ENST00000572607 ATAD2BQ9ULI0 1458 aa15.4■□□□□ 0.06
VPS53-214ENST00000572607 RNF216Q9NWF9 866 aaPredicted RBP15.4■□□□□ 0.06
VPS53-214ENST00000572607 ERCC6Q03468 1493 aa15.39■□□□□ 0.05
VPS53-214ENST00000572607 NESP48681 1621 aa15.36■□□□□ 0.05
VPS53-214ENST00000572607 HMGXB3Q12766 1538 aa15.36■□□□□ 0.05
VPS53-214ENST00000572607 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
VPS53-214ENST00000572607 CACNB1Q02641 598 aaPredicted RBP15.31■□□□□ 0.04
VPS53-214ENST00000572607 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
VPS53-214ENST00000572607 THOC2Q8NI27 1593 aaKnown RBP15.31■□□□□ 0.04
VPS53-214ENST00000572607 BAZ1AQ9NRL2 1556 aaPredicted RBP15.28■□□□□ 0.04
VPS53-214ENST00000572607 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
VPS53-214ENST00000572607 KIF21AQ7Z4S6 1674 aa15.19■□□□□ 0.02
VPS53-214ENST00000572607 RNF39Q9H2S5 420 aa15.19■□□□□ 0.02
VPS53-214ENST00000572607 BAZ1BQ9UIG0 1483 aaKnown RBP15.19■□□□□ 0.02
VPS53-214ENST00000572607 LAMC3Q9Y6N6 1575 aa15.17■□□□□ 0.02
VPS53-214ENST00000572607 NCBP3Q53F19 620 aaKnown RBP15.17■□□□□ 0.02
VPS53-214ENST00000572607 MROH2BQ7Z745 1585 aa15.14■□□□□ 0.01
VPS53-214ENST00000572607 PDS5BQ9NTI5 1447 aa15□□□□□ -0.01
VPS53-214ENST00000572607 WDR62O43379 1518 aa14.99□□□□□ -0.01
VPS53-214ENST00000572607 C1QBPQ07021 282 aaKnown RBP14.98□□□□□ -0.01
VPS53-214ENST00000572607 WIZO95785 1651 aa14.97□□□□□ -0.01
VPS53-214ENST00000572607 CADPSQ9ULU8 1353 aa14.96□□□□□ -0.02
VPS53-214ENST00000572607 MRC2Q9UBG0 1479 aa14.95□□□□□ -0.02
VPS53-214ENST00000572607 RSF1Q96T23 1441 aaPredicted RBP14.94□□□□□ -0.02
VPS53-214ENST00000572607 NPM3O75607 178 aaKnown RBP14.92□□□□□ -0.02
VPS53-214ENST00000572607 TRIM41Q8WV44 630 aa14.92□□□□□ -0.02
VPS53-214ENST00000572607 TOP2AP11388 1531 aaKnown RBP14.84□□□□□ -0.03
VPS53-214ENST00000572607 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
VPS53-214ENST00000572607 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
VPS53-214ENST00000572607 CFTRP13569 1480 aa14.77□□□□□ -0.04
VPS53-214ENST00000572607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
VPS53-214ENST00000572607 URB2Q14146 1524 aaKnown RBP14.76□□□□□ -0.05
VPS53-214ENST00000572607 PRDM2Q13029 1718 aa14.69□□□□□ -0.06
VPS53-214ENST00000572607 RIMBP3CA6NJZ7 1639 aa14.68□□□□□ -0.06
VPS53-214ENST00000572607 RIMBP3BA6NNM3 1639 aa14.68□□□□□ -0.06
VPS53-214ENST00000572607 RIMBP3Q9UFD9 1639 aa14.68□□□□□ -0.06
VPS53-214ENST00000572607 OSCARQ8IYS5 282 aa14.68□□□□□ -0.06
VPS53-214ENST00000572607 CCDC88BA6NC98 1476 aa14.65□□□□□ -0.06
VPS53-214ENST00000572607 ZNF608Q9ULD9 1512 aaPredicted RBP14.61□□□□□ -0.07
VPS53-214ENST00000572607 ARHGEF11O15085 1522 aa14.57□□□□□ -0.08
VPS53-214ENST00000572607 KCNA4P22459 653 aa14.55□□□□□ -0.08
VPS53-214ENST00000572607 SUPT5HO00267 1087 aaKnown RBP14.54□□□□□ -0.08
VPS53-214ENST00000572607 IFT140Q96RY7 1462 aa14.54□□□□□ -0.08
VPS53-214ENST00000572607 EIF4G3O43432 1585 aaKnown RBP14.52□□□□□ -0.08
VPS53-214ENST00000572607 TOPBP1Q92547 1522 aa14.52□□□□□ -0.08
VPS53-214ENST00000572607 CHD1O14646 1710 aa14.5□□□□□ -0.09
VPS53-214ENST00000572607 TARBP1Q13395 1621 aaKnown RBP14.48□□□□□ -0.09
VPS53-214ENST00000572607 U3KPZ7 1027 aaPredicted RBP14.45□□□□□ -0.1
VPS53-214ENST00000572607 ARAP1Q96P48 1450 aa14.44□□□□□ -0.1
VPS53-214ENST00000572607 DNMBPQ6XZF7 1577 aa14.44□□□□□ -0.1
VPS53-214ENST00000572607 ABCC8Q09428 1581 aa14.42□□□□□ -0.1
VPS53-214ENST00000572607 AQRO60306 1485 aaKnown RBP eCLIP14.4□□□□□ -0.11e-7■■■■■ 37.4
VPS53-214ENST00000572607 CYB5RLQ6IPT4 315 aa14.37□□□□□ -0.11
VPS53-214ENST00000572607 POLA1P09884 1462 aaPredicted RBP14.36□□□□□ -0.11
VPS53-214ENST00000572607 CLASP1Q7Z460 1538 aa14.32□□□□□ -0.12
VPS53-214ENST00000572607 RAD54L2Q9Y4B4 1467 aa14.31□□□□□ -0.12
VPS53-214ENST00000572607 SLC4A2P04920 1241 aa14.28□□□□□ -0.12
VPS53-214ENST00000572607 SNAPC4Q5SXM2 1469 aa14.25□□□□□ -0.13
VPS53-214ENST00000572607 SPINK5Q9NQ38 1064 aaPredicted RBP14.25□□□□□ -0.13
VPS53-214ENST00000572607 TDRD9Q8NDG6 1382 aaKnown RBP14.24□□□□□ -0.13
VPS53-214ENST00000572607 WDR97A6NE52 1622 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms