RNA–Protein interactions for RNA: ENST00000568468.5

GINS3-210, Transcript of GINS complex subunit 3, humanhuman

TSL 4

Gene GINS3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-210ENST00000568468 AEBP2Q6ZN18 517 aaPredicted RBP17.4■□□□□ 0.38
GINS3-210ENST00000568468 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
GINS3-210ENST00000568468 SENP3Q9H4L4 574 aaPredicted RBP14.88□□□□□ -0.03
GINS3-210ENST00000568468 PHF23Q9BUL5 403 aaPredicted RBP14.81□□□□□ -0.04
GINS3-210ENST00000568468 NISCHQ9Y2I1 1504 aa14.11□□□□□ -0.15
GINS3-210ENST00000568468 FOXD1Q16676 465 aa13.78□□□□□ -0.2
GINS3-210ENST00000568468 PLPPR3Q6T4P5 718 aa13.57□□□□□ -0.24
GINS3-210ENST00000568468 POTEDQ86YR6 584 aa13.23□□□□□ -0.29
GINS3-210ENST00000568468 PPP6R1Q9UPN7 881 aa13.06□□□□□ -0.32
GINS3-210ENST00000568468 ADRA2BP18089 450 aa13.01□□□□□ -0.33
GINS3-210ENST00000568468 PIAS4Q8N2W9 510 aaPredicted RBP12.98□□□□□ -0.33
GINS3-210ENST00000568468 MSH5O43196 834 aa12.88□□□□□ -0.35
GINS3-210ENST00000568468 CCDC180Q9P1Z9 1646 aa12.51□□□□□ -0.41
GINS3-210ENST00000568468 ABCC9O60706 1549 aa12.22□□□□□ -0.45
GINS3-210ENST00000568468 SCAF1Q9H7N4 1312 aaKnown RBP12.01□□□□□ -0.49
GINS3-210ENST00000568468 PPP4R3CPQ6ZMV5 832 aa11.95□□□□□ -0.5
GINS3-210ENST00000568468 MAPK8IP2Q13387 824 aaPredicted RBP11.86□□□□□ -0.51
GINS3-210ENST00000568468 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
GINS3-210ENST00000568468 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
GINS3-210ENST00000568468 ZCCHC6Q5VYS8 1495 aaKnown RBP11.82□□□□□ -0.52
GINS3-210ENST00000568468 NACADO15069 1562 aa11.78□□□□□ -0.52
GINS3-210ENST00000568468 RB1CC1Q8TDY2 1594 aa11.77□□□□□ -0.53
GINS3-210ENST00000568468 MYO15BQ96JP2 1530 aa11.75□□□□□ -0.53
GINS3-210ENST00000568468 DCAF1Q9Y4B6 1507 aa11.7□□□□□ -0.54
GINS3-210ENST00000568468 KCNA4P22459 653 aa11.65□□□□□ -0.54
GINS3-210ENST00000568468 CNKSR2Q8WXI2 1034 aa11.64□□□□□ -0.55
GINS3-210ENST00000568468 NCBP3Q53F19 620 aaKnown RBP11.57□□□□□ -0.56
GINS3-210ENST00000568468 SHROOM4Q9ULL8 1493 aa11.51□□□□□ -0.57
GINS3-210ENST00000568468 HOXD11P31277 338 aaPredicted RBP11.49□□□□□ -0.57
GINS3-210ENST00000568468 NPM3O75607 178 aaKnown RBP11.48□□□□□ -0.57
GINS3-210ENST00000568468 RNF216Q9NWF9 866 aaPredicted RBP11.48□□□□□ -0.57
GINS3-210ENST00000568468 UNC13AQ9UPW8 1703 aa11.48□□□□□ -0.57
GINS3-210ENST00000568468 BICRAQ9NZM4 1560 aa11.45□□□□□ -0.58
GINS3-210ENST00000568468 SCRIBQ14160 1630 aa11.43□□□□□ -0.58
GINS3-210ENST00000568468 PABPN1Q86U42 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
GINS3-210ENST00000568468 DNAJC5BQ9UF47 199 aa11.35□□□□□ -0.59
GINS3-210ENST00000568468 DCAF8L1A6NGE4 600 aa11.31□□□□□ -0.6
GINS3-210ENST00000568468 EIF4G1Q04637 1599 aaKnown RBP11.12□□□□□ -0.63
GINS3-210ENST00000568468 CC2D2AQ9P2K1 1620 aa11.06□□□□□ -0.64
GINS3-210ENST00000568468 CECR2Q9BXF3 1484 aa11.05□□□□□ -0.64
GINS3-210ENST00000568468 SLC4A1APQ9BWU0 796 aaKnown RBP11.02□□□□□ -0.65
GINS3-210ENST00000568468 RNF39Q9H2S5 420 aa10.98□□□□□ -0.65
GINS3-210ENST00000568468 SUPT5HO00267 1087 aaKnown RBP10.95□□□□□ -0.66
GINS3-210ENST00000568468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.94□□□□□ -0.66
GINS3-210ENST00000568468 MROH2BQ7Z745 1585 aa10.94□□□□□ -0.66
GINS3-210ENST00000568468 SMARCA4P51532 1647 aa10.93□□□□□ -0.66
GINS3-210ENST00000568468 BAZ1AQ9NRL2 1556 aaPredicted RBP10.92□□□□□ -0.66
GINS3-210ENST00000568468 SLC4A2P04920 1241 aa10.9□□□□□ -0.66
GINS3-210ENST00000568468 RSF1Q96T23 1441 aaPredicted RBP10.9□□□□□ -0.66
GINS3-210ENST00000568468 ATAD2BQ9ULI0 1458 aa10.89□□□□□ -0.67
GINS3-210ENST00000568468 NCAPD3P42695 1498 aa10.88□□□□□ -0.67
GINS3-210ENST00000568468 SMARCA2P51531 1590 aa10.86□□□□□ -0.67
GINS3-210ENST00000568468 CACNB1Q02641 598 aaPredicted RBP10.86□□□□□ -0.67
GINS3-210ENST00000568468 PEG3Q9GZU2 1588 aa10.86□□□□□ -0.67
GINS3-210ENST00000568468 C1QBPQ07021 282 aaKnown RBP10.85□□□□□ -0.67
GINS3-210ENST00000568468 HMGXB3Q12766 1538 aa10.83□□□□□ -0.68
GINS3-210ENST00000568468 WIZO95785 1651 aa10.82□□□□□ -0.68
GINS3-210ENST00000568468 BAZ1BQ9UIG0 1483 aaKnown RBP10.78□□□□□ -0.68
GINS3-210ENST00000568468 ZBTB22O15209 634 aa10.77□□□□□ -0.69
GINS3-210ENST00000568468 U3KPZ7 1027 aaPredicted RBP10.72□□□□□ -0.69
GINS3-210ENST00000568468 FOXD4L1Q9NU39 408 aa10.69□□□□□ -0.7
GINS3-210ENST00000568468 TOP2AP11388 1531 aaKnown RBP10.68□□□□□ -0.7
GINS3-210ENST00000568468 CSRNP3Q8WYN3 585 aa10.68□□□□□ -0.7
GINS3-210ENST00000568468 CCDC88BA6NC98 1476 aa10.61□□□□□ -0.71
GINS3-210ENST00000568468 NESP48681 1621 aa10.59□□□□□ -0.71
GINS3-210ENST00000568468 EHMT2Q96KQ7 1210 aa10.59□□□□□ -0.71
GINS3-210ENST00000568468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.58□□□□□ -0.72
GINS3-210ENST00000568468 HNRNPUL2Q1KMD3 747 aaKnown RBP10.58□□□□□ -0.72
GINS3-210ENST00000568468 LAMC3Q9Y6N6 1575 aa10.57□□□□□ -0.72
GINS3-210ENST00000568468 MYCNP04198 464 aaPredicted RBP10.56□□□□□ -0.72
GINS3-210ENST00000568468 CADPSQ9ULU8 1353 aa10.55□□□□□ -0.72
GINS3-210ENST00000568468 APLP2Q06481 763 aa10.55□□□□□ -0.72
GINS3-210ENST00000568468 SAMD1Q6SPF0 538 aaPredicted RBP10.52□□□□□ -0.73
GINS3-210ENST00000568468 ERCC6Q03468 1493 aa10.52□□□□□ -0.73
GINS3-210ENST00000568468 CFTRP13569 1480 aa10.51□□□□□ -0.73
GINS3-210ENST00000568468 PDS5BQ9NTI5 1447 aa10.5□□□□□ -0.73
GINS3-210ENST00000568468 CAPN15O75808 1086 aa10.47□□□□□ -0.73
GINS3-210ENST00000568468 SPINK5Q9NQ38 1064 aaPredicted RBP10.47□□□□□ -0.73
GINS3-210ENST00000568468 KIF21AQ7Z4S6 1674 aa10.44□□□□□ -0.74
GINS3-210ENST00000568468 THOC2Q8NI27 1593 aaKnown RBP10.44□□□□□ -0.74
GINS3-210ENST00000568468 CUX2O14529 1486 aa10.44□□□□□ -0.74
GINS3-210ENST00000568468 FANCD2Q9BXW9 1451 aa10.42□□□□□ -0.74
GINS3-210ENST00000568468 ZNF219Q9P2Y4 722 aaPredicted RBP10.41□□□□□ -0.74
GINS3-210ENST00000568468 CEP164Q9UPV0 1460 aa10.41□□□□□ -0.74
GINS3-210ENST00000568468 ATXN8OSP0DMR3 200 aa10.4□□□□□ -0.74
GINS3-210ENST00000568468 MRC2Q9UBG0 1479 aa10.4□□□□□ -0.74
GINS3-210ENST00000568468 WDR62O43379 1518 aa10.38□□□□□ -0.75
GINS3-210ENST00000568468 PRDM2Q13029 1718 aa10.37□□□□□ -0.75
GINS3-210ENST00000568468 TRHP20396 242 aaPredicted RBP10.35□□□□□ -0.75
GINS3-210ENST00000568468 ATF5Q9Y2D1 282 aaPredicted RBP10.35□□□□□ -0.75
GINS3-210ENST00000568468 DSG3P32926 999 aa10.34□□□□□ -0.75
GINS3-210ENST00000568468 ABCC8Q09428 1581 aa10.34□□□□□ -0.75
GINS3-210ENST00000568468 URB2Q14146 1524 aaKnown RBP10.33□□□□□ -0.76
GINS3-210ENST00000568468 TOPBP1Q92547 1522 aa10.27□□□□□ -0.77
GINS3-210ENST00000568468 WRNQ14191 1432 aaPredicted RBP eCLIP10.26□□□□□ -0.77
GINS3-210ENST00000568468 TRIM41Q8WV44 630 aa10.25□□□□□ -0.77
GINS3-210ENST00000568468 DNMBPQ6XZF7 1577 aa10.25□□□□□ -0.77
GINS3-210ENST00000568468 CUX1P39880 1505 aa10.23□□□□□ -0.77
GINS3-210ENST00000568468 SYNJ1O43426 1573 aa10.23□□□□□ -0.77
GINS3-210ENST00000568468 ABCB7O75027 752 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms