RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 NISCHQ9Y2I1 1504 aa27.61■■■□□ 2.01
CLK3-215ENST00000564353 SHROOM4Q9ULL8 1493 aa24.19■■□□□ 1.46
CLK3-215ENST00000564353 SUPT5HO00267 1087 aaKnown RBP23.71■■□□□ 1.39
CLK3-215ENST00000564353 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
CLK3-215ENST00000564353 CCDC180Q9P1Z9 1646 aa23.51■■□□□ 1.35
CLK3-215ENST00000564353 ZCCHC6Q5VYS8 1495 aaKnown RBP23.28■■□□□ 1.32
CLK3-215ENST00000564353 CHIC1Q5VXU3 224 aa22.78■■□□□ 1.24
CLK3-215ENST00000564353 MYO15BQ96JP2 1530 aa22.72■■□□□ 1.23
CLK3-215ENST00000564353 DCAF1Q9Y4B6 1507 aa22.54■■□□□ 1.2
CLK3-215ENST00000564353 ABCC9O60706 1549 aa22.41■■□□□ 1.18
CLK3-215ENST00000564353 LOC105371045A0A1W2PR82 267 aa22.37■■□□□ 1.17
CLK3-215ENST00000564353 PCGF6Q9BYE7 350 aa22.33■■□□□ 1.17
CLK3-215ENST00000564353 SCRIBQ14160 1630 aa22.18■■□□□ 1.14
CLK3-215ENST00000564353 EHMT2Q96KQ7 1210 aa22.1■■□□□ 1.13
CLK3-215ENST00000564353 HRCP23327 699 aa22.07■■□□□ 1.12
CLK3-215ENST00000564353 FAM9AQ8IZU1 332 aaPredicted RBP22.02■■□□□ 1.12
CLK3-215ENST00000564353 PPARGC1BQ86YN6 1023 aaKnown RBP21.99■■□□□ 1.11
CLK3-215ENST00000564353 RSF1Q96T23 1441 aaPredicted RBP21.96■■□□□ 1.11
CLK3-215ENST00000564353 NACADO15069 1562 aa21.91■■□□□ 1.1
CLK3-215ENST00000564353 TRIM41Q8WV44 630 aa21.88■■□□□ 1.09
CLK3-215ENST00000564353 RB1CC1Q8TDY2 1594 aa21.77■■□□□ 1.08
CLK3-215ENST00000564353 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
CLK3-215ENST00000564353 TRIM26Q12899 539 aaPredicted RBP21.61■■□□□ 1.05
CLK3-215ENST00000564353 MROH2BQ7Z745 1585 aa21.59■■□□□ 1.05
CLK3-215ENST00000564353 WIZO95785 1651 aa21.46■■□□□ 1.03
CLK3-215ENST00000564353 PABPN1Q86U42 306 aaKnown RBP eCLIP21.45■■□□□ 1.02
CLK3-215ENST00000564353 UNC13AQ9UPW8 1703 aa21.33■■□□□ 1
CLK3-215ENST00000564353 TTBK1Q5TCY1 1321 aaPredicted RBP21.32■■□□□ 1
CLK3-215ENST00000564353 BAZ1AQ9NRL2 1556 aaPredicted RBP21.19■□□□□ 0.98
CLK3-215ENST00000564353 BICRAQ9NZM4 1560 aa21.15■□□□□ 0.98
CLK3-215ENST00000564353 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
CLK3-215ENST00000564353 SMARCA4P51532 1647 aa21.08■□□□□ 0.96
CLK3-215ENST00000564353 CCDC88BA6NC98 1476 aa21.05■□□□□ 0.96
CLK3-215ENST00000564353 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.05■□□□□ 0.96
CLK3-215ENST00000564353 PELP1Q8IZL8 1130 aaKnown RBP21.03■□□□□ 0.96
CLK3-215ENST00000564353 SOGA1O94964 1423 aa20.97■□□□□ 0.95
CLK3-215ENST00000564353 ZEB1P37275 1124 aaPredicted RBP20.96■□□□□ 0.95
CLK3-215ENST00000564353 TOP2AP11388 1531 aaKnown RBP20.94■□□□□ 0.94
CLK3-215ENST00000564353 UBTFP17480 764 aaKnown RBP20.93■□□□□ 0.94
CLK3-215ENST00000564353 EIF4G1Q04637 1599 aaKnown RBP20.92■□□□□ 0.94
CLK3-215ENST00000564353 SMARCA2P51531 1590 aa20.9■□□□□ 0.94
CLK3-215ENST00000564353 RUSC2Q8N2Y8 1516 aa20.89■□□□□ 0.93
CLK3-215ENST00000564353 CCER1Q8TC90 406 aaPredicted RBP20.89■□□□□ 0.93
CLK3-215ENST00000564353 RANGAP1P46060 587 aaPredicted RBP20.86■□□□□ 0.93
CLK3-215ENST00000564353 CSRNP3Q8WYN3 585 aa20.8■□□□□ 0.92
CLK3-215ENST00000564353 CEP162Q5TB80 1403 aa20.78■□□□□ 0.92
CLK3-215ENST00000564353 ATAD2BQ9ULI0 1458 aa20.7■□□□□ 0.9
CLK3-215ENST00000564353 WRNQ14191 1432 aaPredicted RBP eCLIP20.64■□□□□ 0.9
CLK3-215ENST00000564353 PEG3Q9GZU2 1588 aa20.64■□□□□ 0.89
CLK3-215ENST00000564353 TNIKQ9UKE5 1360 aa20.61■□□□□ 0.89
CLK3-215ENST00000564353 BAZ1BQ9UIG0 1483 aaKnown RBP20.61■□□□□ 0.89
CLK3-215ENST00000564353 HNRNPUL2Q1KMD3 747 aaKnown RBP20.57■□□□□ 0.88
CLK3-215ENST00000564353 SYNJ1O43426 1573 aa20.52■□□□□ 0.87
CLK3-215ENST00000564353 GOLGA3Q08378 1498 aa20.5■□□□□ 0.87
CLK3-215ENST00000564353 SCAF1Q9H7N4 1312 aaKnown RBP20.49■□□□□ 0.87
CLK3-215ENST00000564353 MYT1Q01538 1121 aa20.45■□□□□ 0.86
CLK3-215ENST00000564353 EEA1Q15075 1411 aa20.45■□□□□ 0.86
CLK3-215ENST00000564353 DIEXFQ68CQ4 756 aaKnown RBP20.41■□□□□ 0.86
CLK3-215ENST00000564353 CLIP1P30622 1438 aa20.39■□□□□ 0.85
CLK3-215ENST00000564353 RAPGEF2Q9Y4G8 1499 aa20.38■□□□□ 0.85
CLK3-215ENST00000564353 APLP2Q06481 763 aa20.36■□□□□ 0.85
CLK3-215ENST00000564353 CEP164Q9UPV0 1460 aa20.35■□□□□ 0.85
CLK3-215ENST00000564353 NCAPD3P42695 1498 aa20.35■□□□□ 0.85
CLK3-215ENST00000564353 NEUROD1Q13562 356 aa20.3■□□□□ 0.84
CLK3-215ENST00000564353 YTHDC1Q96MU7 727 aaKnown RBP20.24■□□□□ 0.83
CLK3-215ENST00000564353 HMGXB3Q12766 1538 aa20.23■□□□□ 0.83
CLK3-215ENST00000564353 VPS8Q8N3P4 1428 aa20.2■□□□□ 0.82
CLK3-215ENST00000564353 KIF21BO75037 1637 aa20.18■□□□□ 0.82
CLK3-215ENST00000564353 ACIN1Q9UKV3 1341 aaKnown RBP20.18■□□□□ 0.82
CLK3-215ENST00000564353 ZNF316A6NFI3 1004 aaPredicted RBP20.17■□□□□ 0.82
CLK3-215ENST00000564353 KANK4Q5T7N3 995 aaPredicted RBP20.16■□□□□ 0.82
CLK3-215ENST00000564353 ITGAEP38570 1179 aa20.13■□□□□ 0.81
CLK3-215ENST00000564353 TOP2BQ02880 1626 aa20.1■□□□□ 0.81
CLK3-215ENST00000564353 GTF3C3Q9Y5Q9 886 aa20.1■□□□□ 0.81
CLK3-215ENST00000564353 CC2D2AQ9P2K1 1620 aa20.09■□□□□ 0.81
CLK3-215ENST00000564353 CFTRP13569 1480 aa20.07■□□□□ 0.8
CLK3-215ENST00000564353 CUX1P39880 1505 aa20.06■□□□□ 0.8
CLK3-215ENST00000564353 MIER1Q8N108 512 aa20.04■□□□□ 0.8
CLK3-215ENST00000564353 CENPBP07199 599 aaPredicted RBP20.01■□□□□ 0.79
CLK3-215ENST00000564353 ARAP1Q96P48 1450 aa19.99■□□□□ 0.79
CLK3-215ENST00000564353 PRXQ9BXM0 1461 aa19.99■□□□□ 0.79
CLK3-215ENST00000564353 DNAJC5BQ9UF47 199 aa19.98■□□□□ 0.79
CLK3-215ENST00000564353 P3H3Q8IVL6 736 aa19.98■□□□□ 0.79
CLK3-215ENST00000564353 CADPSQ9ULU8 1353 aa19.98■□□□□ 0.79
CLK3-215ENST00000564353 KIF27Q86VH2 1401 aa19.96■□□□□ 0.79
CLK3-215ENST00000564353 ATP1B4Q9UN42 357 aaPredicted RBP19.96■□□□□ 0.79
CLK3-215ENST00000564353 BIVM-ERCC5R4GMW8 1640 aa19.94■□□□□ 0.78
CLK3-215ENST00000564353 CUX2O14529 1486 aa19.89■□□□□ 0.77
CLK3-215ENST00000564353 NESP48681 1621 aa19.85■□□□□ 0.77
CLK3-215ENST00000564353 ERICH3Q5RHP9 1530 aa19.84■□□□□ 0.77
CLK3-215ENST00000564353 DHX57Q6P158 1386 aaKnown RBP19.84■□□□□ 0.77
CLK3-215ENST00000564353 ARHGAP35Q9NRY4 1499 aa19.83■□□□□ 0.76
CLK3-215ENST00000564353 IGF1RP08069 1367 aa19.82■□□□□ 0.76
CLK3-215ENST00000564353 FANCD2Q9BXW9 1451 aa19.77■□□□□ 0.76
CLK3-215ENST00000564353 FAM50AQ14320 339 aaKnown RBP19.76■□□□□ 0.75
CLK3-215ENST00000564353 CARMIL1Q5VZK9 1371 aa19.75■□□□□ 0.75
CLK3-215ENST00000564353 CCNB3Q8WWL7 1395 aa19.74■□□□□ 0.75
CLK3-215ENST00000564353 FGD5Q6ZNL6 1462 aa19.74■□□□□ 0.75
CLK3-215ENST00000564353 PRDM2Q13029 1718 aa19.7■□□□□ 0.74
CLK3-215ENST00000564353 RAD54L2Q9Y4B4 1467 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms