RNA–Protein interactions for RNA: ENST00000560997.1

SNX22-206, Transcript of sorting nexin 22, humanhuman

TSL 1 (best)

Gene SNX22, Length 3,367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX22-206ENST00000560997 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
SNX22-206ENST00000560997 AEBP2Q6ZN18 517 aaPredicted RBP17.59■□□□□ 0.41
SNX22-206ENST00000560997 CHIC1Q5VXU3 224 aa17.53■□□□□ 0.4
SNX22-206ENST00000560997 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
SNX22-206ENST00000560997 CCDC180Q9P1Z9 1646 aa17.31■□□□□ 0.36
SNX22-206ENST00000560997 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
SNX22-206ENST00000560997 SUPT5HO00267 1087 aaKnown RBP17.06■□□□□ 0.32
SNX22-206ENST00000560997 DCAF8L2P0C7V8 631 aa16.9■□□□□ 0.3
SNX22-206ENST00000560997 DCAF1Q9Y4B6 1507 aa16.69■□□□□ 0.26
SNX22-206ENST00000560997 MYO15BQ96JP2 1530 aa16.56■□□□□ 0.24
SNX22-206ENST00000560997 ABCC9O60706 1549 aa16.28■□□□□ 0.2
SNX22-206ENST00000560997 SCRIBQ14160 1630 aa16.27■□□□□ 0.2
SNX22-206ENST00000560997 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
SNX22-206ENST00000560997 LOC105371045A0A1W2PR82 267 aa16.1■□□□□ 0.17
SNX22-206ENST00000560997 PCGF6Q9BYE7 350 aa16.06■□□□□ 0.16
SNX22-206ENST00000560997 HRCP23327 699 aa16.05■□□□□ 0.16
SNX22-206ENST00000560997 NACADO15069 1562 aa15.99■□□□□ 0.15
SNX22-206ENST00000560997 RB1CC1Q8TDY2 1594 aa15.99■□□□□ 0.15
SNX22-206ENST00000560997 CECR2Q9BXF3 1484 aa15.92■□□□□ 0.14
SNX22-206ENST00000560997 MROH2BQ7Z745 1585 aa15.86■□□□□ 0.13
SNX22-206ENST00000560997 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
SNX22-206ENST00000560997 WIZO95785 1651 aa15.79■□□□□ 0.12
SNX22-206ENST00000560997 PPARGC1BQ86YN6 1023 aaKnown RBP15.77■□□□□ 0.11
SNX22-206ENST00000560997 FAM9AQ8IZU1 332 aaPredicted RBP15.76■□□□□ 0.11
SNX22-206ENST00000560997 TRIM26Q12899 539 aaPredicted RBP15.72■□□□□ 0.11
SNX22-206ENST00000560997 PHF23Q9BUL5 403 aaPredicted RBP15.67■□□□□ 0.1
SNX22-206ENST00000560997 BAZ1AQ9NRL2 1556 aaPredicted RBP15.66■□□□□ 0.1
SNX22-206ENST00000560997 EHMT2Q96KQ7 1210 aa15.66■□□□□ 0.1
SNX22-206ENST00000560997 EIF4G1Q04637 1599 aaKnown RBP15.58■□□□□ 0.08
SNX22-206ENST00000560997 UNC13AQ9UPW8 1703 aa15.56■□□□□ 0.08
SNX22-206ENST00000560997 SMARCA4P51532 1647 aa15.53■□□□□ 0.08
SNX22-206ENST00000560997 TOP2AP11388 1531 aaKnown RBP15.51■□□□□ 0.07
SNX22-206ENST00000560997 CCDC88BA6NC98 1476 aa15.46■□□□□ 0.06
SNX22-206ENST00000560997 ABCC8Q09428 1581 aa15.44■□□□□ 0.06
SNX22-206ENST00000560997 SMARCA2P51531 1590 aa15.44■□□□□ 0.06
SNX22-206ENST00000560997 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
SNX22-206ENST00000560997 BICRAQ9NZM4 1560 aa15.35■□□□□ 0.05
SNX22-206ENST00000560997 ZEB1P37275 1124 aaPredicted RBP15.34■□□□□ 0.05
SNX22-206ENST00000560997 SOGA1O94964 1423 aa15.28■□□□□ 0.04
SNX22-206ENST00000560997 RUSC2Q8N2Y8 1516 aa15.22■□□□□ 0.03
SNX22-206ENST00000560997 PEG3Q9GZU2 1588 aa15.21■□□□□ 0.03
SNX22-206ENST00000560997 CEP162Q5TB80 1403 aa15.2■□□□□ 0.02
SNX22-206ENST00000560997 CSRNP3Q8WYN3 585 aa15.16■□□□□ 0.02
SNX22-206ENST00000560997 WRNQ14191 1432 aaPredicted RBP eCLIP15.16■□□□□ 0.02
SNX22-206ENST00000560997 TTBK1Q5TCY1 1321 aaPredicted RBP15.16■□□□□ 0.02
SNX22-206ENST00000560997 TNIKQ9UKE5 1360 aa15.15■□□□□ 0.02
SNX22-206ENST00000560997 EEA1Q15075 1411 aa15.15■□□□□ 0.02
SNX22-206ENST00000560997 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.14■□□□□ 0.01
SNX22-206ENST00000560997 ATAD2BQ9ULI0 1458 aa15.12■□□□□ 0.01
SNX22-206ENST00000560997 UBTFP17480 764 aaKnown RBP15.11■□□□□ 0.01
SNX22-206ENST00000560997 SYNJ1O43426 1573 aa15.1■□□□□ 0.01
SNX22-206ENST00000560997 BAZ1BQ9UIG0 1483 aaKnown RBP15.08■□□□□ 0
SNX22-206ENST00000560997 GOLGA3Q08378 1498 aa15.07■□□□□ 0
SNX22-206ENST00000560997 CCER1Q8TC90 406 aaPredicted RBP15.07■□□□□ 0
SNX22-206ENST00000560997 CEP164Q9UPV0 1460 aa14.99□□□□□ -0.01
SNX22-206ENST00000560997 KIF21BO75037 1637 aa14.97□□□□□ -0.01
SNX22-206ENST00000560997 RAPGEF2Q9Y4G8 1499 aa14.91□□□□□ -0.02
SNX22-206ENST00000560997 CLIP1P30622 1438 aa14.91□□□□□ -0.02
SNX22-206ENST00000560997 TOP2BQ02880 1626 aa14.89□□□□□ -0.03
SNX22-206ENST00000560997 RANGAP1P46060 587 aaPredicted RBP14.85□□□□□ -0.03
SNX22-206ENST00000560997 VPS8Q8N3P4 1428 aa14.84□□□□□ -0.03
SNX22-206ENST00000560997 BIVM-ERCC5R4GMW8 1640 aa14.84□□□□□ -0.03
SNX22-206ENST00000560997 HMGXB3Q12766 1538 aa14.81□□□□□ -0.04
SNX22-206ENST00000560997 NCAPD3P42695 1498 aa14.81□□□□□ -0.04
SNX22-206ENST00000560997 SCAF1Q9H7N4 1312 aaKnown RBP14.8□□□□□ -0.04
SNX22-206ENST00000560997 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
SNX22-206ENST00000560997 DIEXFQ68CQ4 756 aaKnown RBP14.77□□□□□ -0.04
SNX22-206ENST00000560997 CUX1P39880 1505 aa14.77□□□□□ -0.05
SNX22-206ENST00000560997 PRXQ9BXM0 1461 aa14.74□□□□□ -0.05
SNX22-206ENST00000560997 APLP2Q06481 763 aa14.74□□□□□ -0.05
SNX22-206ENST00000560997 ERICH3Q5RHP9 1530 aa14.73□□□□□ -0.05
SNX22-206ENST00000560997 CFTRP13569 1480 aa14.7□□□□□ -0.06
SNX22-206ENST00000560997 ARAP1Q96P48 1450 aa14.69□□□□□ -0.06
SNX22-206ENST00000560997 KIF27Q86VH2 1401 aa14.66□□□□□ -0.06
SNX22-206ENST00000560997 ZNF316A6NFI3 1004 aaPredicted RBP14.66□□□□□ -0.06
SNX22-206ENST00000560997 NEUROD1Q13562 356 aa14.65□□□□□ -0.06
SNX22-206ENST00000560997 ACIN1Q9UKV3 1341 aaKnown RBP14.64□□□□□ -0.07
SNX22-206ENST00000560997 KANK4Q5T7N3 995 aaPredicted RBP14.61□□□□□ -0.07
SNX22-206ENST00000560997 PRDM2Q13029 1718 aa14.59□□□□□ -0.07
SNX22-206ENST00000560997 SENP3Q9H4L4 574 aaPredicted RBP14.57□□□□□ -0.08
SNX22-206ENST00000560997 ARHGAP35Q9NRY4 1499 aa14.56□□□□□ -0.08
SNX22-206ENST00000560997 CUX2O14529 1486 aa14.55□□□□□ -0.08
SNX22-206ENST00000560997 CADPSQ9ULU8 1353 aa14.53□□□□□ -0.08
SNX22-206ENST00000560997 CENPBP07199 599 aaPredicted RBP14.53□□□□□ -0.08
SNX22-206ENST00000560997 IGF1RP08069 1367 aa14.52□□□□□ -0.09
SNX22-206ENST00000560997 DHX57Q6P158 1386 aaKnown RBP14.5□□□□□ -0.09
SNX22-206ENST00000560997 FGD5Q6ZNL6 1462 aa14.5□□□□□ -0.09
SNX22-206ENST00000560997 RRBP1Q9P2E9 1410 aaKnown RBP14.49□□□□□ -0.09
SNX22-206ENST00000560997 GTF3C3Q9Y5Q9 886 aa14.48□□□□□ -0.09
SNX22-206ENST00000560997 PLPPR3Q6T4P5 718 aa14.48□□□□□ -0.09
SNX22-206ENST00000560997 MIER1Q8N108 512 aa14.47□□□□□ -0.09
SNX22-206ENST00000560997 CC2D2AQ9P2K1 1620 aa14.46□□□□□ -0.09
SNX22-206ENST00000560997 YTHDC1Q96MU7 727 aaKnown RBP14.45□□□□□ -0.1
SNX22-206ENST00000560997 CARMIL1Q5VZK9 1371 aa14.45□□□□□ -0.1
SNX22-206ENST00000560997 CCNB3Q8WWL7 1395 aa14.44□□□□□ -0.1
SNX22-206ENST00000560997 CLSPNQ9HAW4 1339 aa14.43□□□□□ -0.1
SNX22-206ENST00000560997 ITGAEP38570 1179 aa14.41□□□□□ -0.1
SNX22-206ENST00000560997 FANCD2Q9BXW9 1451 aa14.41□□□□□ -0.1
SNX22-206ENST00000560997 TIAM1Q13009 1591 aa14.4□□□□□ -0.11
SNX22-206ENST00000560997 PELP1Q8IZL8 1130 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms