RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 NISCHQ9Y2I1 1504 aa36.71■■■■□ 3.47
XRCC3-218ENST00000557439 SHROOM4Q9ULL8 1493 aa31.68■■■□□ 2.66
XRCC3-218ENST00000557439 CCDC180Q9P1Z9 1646 aa31.05■■■□□ 2.56
XRCC3-218ENST00000557439 ZCCHC6Q5VYS8 1495 aaKnown RBP31.03■■■□□ 2.56
XRCC3-218ENST00000557439 SUPT5HO00267 1087 aaKnown RBP31.02■■■□□ 2.56
XRCC3-218ENST00000557439 DCAF8L2P0C7V8 631 aa30.81■■■□□ 2.52
XRCC3-218ENST00000557439 CHIC1Q5VXU3 224 aa30.03■■■□□ 2.4
XRCC3-218ENST00000557439 MYO15BQ96JP2 1530 aa30■■■□□ 2.39
XRCC3-218ENST00000557439 DCAF1Q9Y4B6 1507 aa29.92■■■□□ 2.38
XRCC3-218ENST00000557439 SCRIBQ14160 1630 aa29.4■■■□□ 2.3
XRCC3-218ENST00000557439 LOC105371045A0A1W2PR82 267 aa29.3■■■□□ 2.28
XRCC3-218ENST00000557439 ABCC9O60706 1549 aa29.28■■■□□ 2.28
XRCC3-218ENST00000557439 PCGF6Q9BYE7 350 aa29.22■■■□□ 2.27
XRCC3-218ENST00000557439 RSF1Q96T23 1441 aaPredicted RBP29.12■■■□□ 2.25
XRCC3-218ENST00000557439 HRCP23327 699 aa29.07■■■□□ 2.24
XRCC3-218ENST00000557439 RB1CC1Q8TDY2 1594 aa28.89■■■□□ 2.22
XRCC3-218ENST00000557439 CECR2Q9BXF3 1484 aa28.8■■■□□ 2.2
XRCC3-218ENST00000557439 TRIM41Q8WV44 630 aa28.75■■■□□ 2.19
XRCC3-218ENST00000557439 NACADO15069 1562 aa28.74■■■□□ 2.19
XRCC3-218ENST00000557439 PPARGC1BQ86YN6 1023 aaKnown RBP28.74■■■□□ 2.19
XRCC3-218ENST00000557439 FAM9AQ8IZU1 332 aaPredicted RBP28.74■■■□□ 2.19
XRCC3-218ENST00000557439 EHMT2Q96KQ7 1210 aa28.65■■■□□ 2.18
XRCC3-218ENST00000557439 MROH2BQ7Z745 1585 aa28.65■■■□□ 2.18
XRCC3-218ENST00000557439 WIZO95785 1651 aa28.52■■■□□ 2.16
XRCC3-218ENST00000557439 TRIM26Q12899 539 aaPredicted RBP28.47■■■□□ 2.15
XRCC3-218ENST00000557439 BAZ1AQ9NRL2 1556 aaPredicted RBP28.19■■■□□ 2.1
XRCC3-218ENST00000557439 UNC13AQ9UPW8 1703 aa28.03■■■□□ 2.08
XRCC3-218ENST00000557439 EIF4G1Q04637 1599 aaKnown RBP28.01■■■□□ 2.07
XRCC3-218ENST00000557439 SMARCA4P51532 1647 aa27.97■■■□□ 2.07
XRCC3-218ENST00000557439 ABCC8Q09428 1581 aa27.95■■■□□ 2.07
XRCC3-218ENST00000557439 PABPN1Q86U42 306 aaKnown RBP eCLIP27.95■■■□□ 2.06
XRCC3-218ENST00000557439 TOP2AP11388 1531 aaKnown RBP27.92■■■□□ 2.06
XRCC3-218ENST00000557439 CCDC88BA6NC98 1476 aa27.91■■■□□ 2.06
XRCC3-218ENST00000557439 SMARCA2P51531 1590 aa27.83■■■□□ 2.05
XRCC3-218ENST00000557439 TTBK1Q5TCY1 1321 aaPredicted RBP27.7■■■□□ 2.02
XRCC3-218ENST00000557439 ZEB1P37275 1124 aaPredicted RBP27.69■■■□□ 2.02
XRCC3-218ENST00000557439 SOGA1O94964 1423 aa27.68■■■□□ 2.02
XRCC3-218ENST00000557439 BICRAQ9NZM4 1560 aa27.66■■■□□ 2.02
XRCC3-218ENST00000557439 RUSC2Q8N2Y8 1516 aa27.59■■■□□ 2.01
XRCC3-218ENST00000557439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.55■■■□□ 2
XRCC3-218ENST00000557439 CEP162Q5TB80 1403 aa27.47■■□□□ 1.99
XRCC3-218ENST00000557439 UBTFP17480 764 aaKnown RBP27.44■■□□□ 1.98
XRCC3-218ENST00000557439 CSRNP3Q8WYN3 585 aa27.44■■□□□ 1.98
XRCC3-218ENST00000557439 CCER1Q8TC90 406 aaPredicted RBP27.36■■□□□ 1.97
XRCC3-218ENST00000557439 WRNQ14191 1432 aaPredicted RBP eCLIP27.34■■□□□ 1.97
XRCC3-218ENST00000557439 TNIKQ9UKE5 1360 aa27.34■■□□□ 1.97
XRCC3-218ENST00000557439 PEG3Q9GZU2 1588 aa27.3■■□□□ 1.96
XRCC3-218ENST00000557439 ATAD2BQ9ULI0 1458 aa27.26■■□□□ 1.96
XRCC3-218ENST00000557439 SYNJ1O43426 1573 aa27.26■■□□□ 1.95
XRCC3-218ENST00000557439 EEA1Q15075 1411 aa27.24■■□□□ 1.95
XRCC3-218ENST00000557439 BAZ1BQ9UIG0 1483 aaKnown RBP27.2■■□□□ 1.95
XRCC3-218ENST00000557439 GOLGA3Q08378 1498 aa27.19■■□□□ 1.94
XRCC3-218ENST00000557439 RANGAP1P46060 587 aaPredicted RBP27.12■■□□□ 1.93
XRCC3-218ENST00000557439 CEP164Q9UPV0 1460 aa27.01■■□□□ 1.91
XRCC3-218ENST00000557439 RAPGEF2Q9Y4G8 1499 aa26.96■■□□□ 1.91
XRCC3-218ENST00000557439 CLIP1P30622 1438 aa26.95■■□□□ 1.91
XRCC3-218ENST00000557439 KIF21BO75037 1637 aa26.94■■□□□ 1.9
XRCC3-218ENST00000557439 HNRNPUL2Q1KMD3 747 aaKnown RBP26.91■■□□□ 1.9
XRCC3-218ENST00000557439 SCAF1Q9H7N4 1312 aaKnown RBP26.89■■□□□ 1.89
XRCC3-218ENST00000557439 TOP2BQ02880 1626 aa26.81■■□□□ 1.88
XRCC3-218ENST00000557439 DIEXFQ68CQ4 756 aaKnown RBP26.8■■□□□ 1.88
XRCC3-218ENST00000557439 VPS8Q8N3P4 1428 aa26.78■■□□□ 1.88
XRCC3-218ENST00000557439 APLP2Q06481 763 aa26.72■■□□□ 1.87
XRCC3-218ENST00000557439 BIVM-ERCC5R4GMW8 1640 aa26.68■■□□□ 1.86
XRCC3-218ENST00000557439 NCAPD3P42695 1498 aa26.65■■□□□ 1.86
XRCC3-218ENST00000557439 CUX1P39880 1505 aa26.64■■□□□ 1.86
XRCC3-218ENST00000557439 NEUROD1Q13562 356 aa26.62■■□□□ 1.85
XRCC3-218ENST00000557439 HMGXB3Q12766 1538 aa26.61■■□□□ 1.85
XRCC3-218ENST00000557439 PRXQ9BXM0 1461 aa26.57■■□□□ 1.84
XRCC3-218ENST00000557439 ZNF316A6NFI3 1004 aaPredicted RBP26.55■■□□□ 1.84
XRCC3-218ENST00000557439 ACIN1Q9UKV3 1341 aaKnown RBP26.54■■□□□ 1.84
XRCC3-218ENST00000557439 ARAP1Q96P48 1450 aa26.52■■□□□ 1.84
XRCC3-218ENST00000557439 KANK4Q5T7N3 995 aaPredicted RBP26.52■■□□□ 1.84
XRCC3-218ENST00000557439 ERICH3Q5RHP9 1530 aa26.48■■□□□ 1.83
XRCC3-218ENST00000557439 CFTRP13569 1480 aa26.48■■□□□ 1.83
XRCC3-218ENST00000557439 KIF27Q86VH2 1401 aa26.46■■□□□ 1.83
XRCC3-218ENST00000557439 YTHDC1Q96MU7 727 aaKnown RBP26.35■■□□□ 1.81
XRCC3-218ENST00000557439 GTF3C3Q9Y5Q9 886 aa26.32■■□□□ 1.8
XRCC3-218ENST00000557439 CENPBP07199 599 aaPredicted RBP26.3■■□□□ 1.8
XRCC3-218ENST00000557439 MIER1Q8N108 512 aa26.3■■□□□ 1.8
XRCC3-218ENST00000557439 CUX2O14529 1486 aa26.3■■□□□ 1.8
XRCC3-218ENST00000557439 ARHGAP35Q9NRY4 1499 aa26.29■■□□□ 1.8
XRCC3-218ENST00000557439 ITGAEP38570 1179 aa26.26■■□□□ 1.79
XRCC3-218ENST00000557439 IGF1RP08069 1367 aa26.23■■□□□ 1.79
XRCC3-218ENST00000557439 DHX57Q6P158 1386 aaKnown RBP26.22■■□□□ 1.79
XRCC3-218ENST00000557439 CADPSQ9ULU8 1353 aa26.22■■□□□ 1.79
XRCC3-218ENST00000557439 FGD5Q6ZNL6 1462 aa26.18■■□□□ 1.78
XRCC3-218ENST00000557439 PRDM2Q13029 1718 aa26.17■■□□□ 1.78
XRCC3-218ENST00000557439 RRBP1Q9P2E9 1410 aaKnown RBP26.13■■□□□ 1.77
XRCC3-218ENST00000557439 CARMIL1Q5VZK9 1371 aa26.12■■□□□ 1.77
XRCC3-218ENST00000557439 P3H3Q8IVL6 736 aa26.12■■□□□ 1.77
XRCC3-218ENST00000557439 CC2D2AQ9P2K1 1620 aa26.1■■□□□ 1.77
XRCC3-218ENST00000557439 CCNB3Q8WWL7 1395 aa26.09■■□□□ 1.77
XRCC3-218ENST00000557439 ATP1B4Q9UN42 357 aaPredicted RBP26.02■■□□□ 1.76
XRCC3-218ENST00000557439 FANCD2Q9BXW9 1451 aa26■■□□□ 1.75
XRCC3-218ENST00000557439 RAD54L2Q9Y4B4 1467 aa26■■□□□ 1.75
XRCC3-218ENST00000557439 NESP48681 1621 aa25.97■■□□□ 1.75
XRCC3-218ENST00000557439 CLSPNQ9HAW4 1339 aa25.97■■□□□ 1.75
XRCC3-218ENST00000557439 TIAM1Q13009 1591 aa25.95■■□□□ 1.75
XRCC3-218ENST00000557439 PELP1Q8IZL8 1130 aaKnown RBP25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms