RNA–Protein interactions for RNA: ENST00000556958.5

ATXN3-245, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-245ENST00000556958 AEBP2Q6ZN18 517 aaPredicted RBP20.47■□□□□ 0.87
ATXN3-245ENST00000556958 CHIC1Q5VXU3 224 aa19.04■□□□□ 0.64
ATXN3-245ENST00000556958 SENP3Q9H4L4 574 aaPredicted RBP17.49■□□□□ 0.39
ATXN3-245ENST00000556958 PHF23Q9BUL5 403 aaPredicted RBP17.2■□□□□ 0.34
ATXN3-245ENST00000556958 FOXD1Q16676 465 aa16.43■□□□□ 0.22
ATXN3-245ENST00000556958 POTEDQ86YR6 584 aa16.3■□□□□ 0.2
ATXN3-245ENST00000556958 MSH5O43196 834 aa15.55■□□□□ 0.08
ATXN3-245ENST00000556958 PIAS4Q8N2W9 510 aaPredicted RBP15.17■□□□□ 0.02
ATXN3-245ENST00000556958 PPP6R1Q9UPN7 881 aa14.89□□□□□ -0.03
ATXN3-245ENST00000556958 ADRA2BP18089 450 aa14.79□□□□□ -0.04
ATXN3-245ENST00000556958 NISCHQ9Y2I1 1504 aa14.78□□□□□ -0.04
ATXN3-245ENST00000556958 PLPPR3Q6T4P5 718 aa14.7□□□□□ -0.06
ATXN3-245ENST00000556958 ABCC9O60706 1549 aa14.19□□□□□ -0.14
ATXN3-245ENST00000556958 DNAJC5BQ9UF47 199 aa13.95□□□□□ -0.18
ATXN3-245ENST00000556958 DMRT2Q9Y5R5 561 aa13.79□□□□□ -0.2
ATXN3-245ENST00000556958 MAPK8IP2Q13387 824 aaPredicted RBP13.78□□□□□ -0.2
ATXN3-245ENST00000556958 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
ATXN3-245ENST00000556958 SCAF1Q9H7N4 1312 aaKnown RBP13.44□□□□□ -0.26
ATXN3-245ENST00000556958 DNAJC5Q9H3Z4 198 aa13.38□□□□□ -0.27
ATXN3-245ENST00000556958 CCDC180Q9P1Z9 1646 aa13.37□□□□□ -0.27
ATXN3-245ENST00000556958 RNF39Q9H2S5 420 aa13.24□□□□□ -0.29
ATXN3-245ENST00000556958 DCAF8L1A6NGE4 600 aa13.22□□□□□ -0.29
ATXN3-245ENST00000556958 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
ATXN3-245ENST00000556958 RB1CC1Q8TDY2 1594 aa13.18□□□□□ -0.3
ATXN3-245ENST00000556958 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
ATXN3-245ENST00000556958 DCAF8L2P0C7V8 631 aa12.99□□□□□ -0.33
ATXN3-245ENST00000556958 C1QBPQ07021 282 aaKnown RBP12.99□□□□□ -0.33
ATXN3-245ENST00000556958 NACADO15069 1562 aa12.95□□□□□ -0.34
ATXN3-245ENST00000556958 CECR2Q9BXF3 1484 aa12.88□□□□□ -0.35
ATXN3-245ENST00000556958 PPP4R3CPQ6ZMV5 832 aa12.83□□□□□ -0.36
ATXN3-245ENST00000556958 RNF216Q9NWF9 866 aaPredicted RBP12.76□□□□□ -0.37
ATXN3-245ENST00000556958 BICRAQ9NZM4 1560 aa12.73□□□□□ -0.37
ATXN3-245ENST00000556958 CNKSR2Q8WXI2 1034 aa12.71□□□□□ -0.37
ATXN3-245ENST00000556958 CC2D2AQ9P2K1 1620 aa12.68□□□□□ -0.38
ATXN3-245ENST00000556958 SHROOM4Q9ULL8 1493 aa12.64□□□□□ -0.39
ATXN3-245ENST00000556958 POTEHQ6S545 545 aa12.63□□□□□ -0.39
ATXN3-245ENST00000556958 MYO15BQ96JP2 1530 aa12.6□□□□□ -0.39
ATXN3-245ENST00000556958 UNC13AQ9UPW8 1703 aa12.54□□□□□ -0.4
ATXN3-245ENST00000556958 CUX2O14529 1486 aa12.53□□□□□ -0.4
ATXN3-245ENST00000556958 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.4
ATXN3-245ENST00000556958 TRIM41Q8WV44 630 aa12.51□□□□□ -0.41
ATXN3-245ENST00000556958 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.38□□□□□ -0.43
ATXN3-245ENST00000556958 ERCC6Q03468 1493 aa12.35□□□□□ -0.43
ATXN3-245ENST00000556958 SCRIBQ14160 1630 aa12.29□□□□□ -0.44
ATXN3-245ENST00000556958 DSG3P32926 999 aa12.2□□□□□ -0.46
ATXN3-245ENST00000556958 DCAF1Q9Y4B6 1507 aa12.18□□□□□ -0.46
ATXN3-245ENST00000556958 SPINK5Q9NQ38 1064 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-245ENST00000556958 U3KPZ7 1027 aaPredicted RBP12.12□□□□□ -0.47
ATXN3-245ENST00000556958 CAPN15O75808 1086 aa12.08□□□□□ -0.48
ATXN3-245ENST00000556958 NCBP3Q53F19 620 aaKnown RBP12.08□□□□□ -0.48
ATXN3-245ENST00000556958 ZCCHC6Q5VYS8 1495 aaKnown RBP12.08□□□□□ -0.48
ATXN3-245ENST00000556958 NCAPD3P42695 1498 aa12.05□□□□□ -0.48
ATXN3-245ENST00000556958 OSCARQ8IYS5 282 aa12.01□□□□□ -0.49
ATXN3-245ENST00000556958 NPM3O75607 178 aaKnown RBP11.98□□□□□ -0.49
ATXN3-245ENST00000556958 NESP48681 1621 aa11.95□□□□□ -0.5
ATXN3-245ENST00000556958 PDS5BQ9NTI5 1447 aa11.89□□□□□ -0.51
ATXN3-245ENST00000556958 ATAD2BQ9ULI0 1458 aa11.88□□□□□ -0.51
ATXN3-245ENST00000556958 TRHP20396 242 aaPredicted RBP11.85□□□□□ -0.51
ATXN3-245ENST00000556958 THOC2Q8NI27 1593 aaKnown RBP11.84□□□□□ -0.51
ATXN3-245ENST00000556958 SMARCA2P51531 1590 aa11.79□□□□□ -0.52
ATXN3-245ENST00000556958 ABCB7O75027 752 aa11.79□□□□□ -0.52
ATXN3-245ENST00000556958 HMGXB3Q12766 1538 aa11.79□□□□□ -0.52
ATXN3-245ENST00000556958 LAMC3Q9Y6N6 1575 aa11.77□□□□□ -0.53
ATXN3-245ENST00000556958 CYB5RLQ6IPT4 315 aa11.74□□□□□ -0.53
ATXN3-245ENST00000556958 MRC2Q9UBG0 1479 aa11.72□□□□□ -0.53
ATXN3-245ENST00000556958 BAZ1BQ9UIG0 1483 aaKnown RBP11.72□□□□□ -0.53
ATXN3-245ENST00000556958 BAZ1AQ9NRL2 1556 aaPredicted RBP11.7□□□□□ -0.54
ATXN3-245ENST00000556958 CADPSQ9ULU8 1353 aa11.69□□□□□ -0.54
ATXN3-245ENST00000556958 ZNF219Q9P2Y4 722 aaPredicted RBP11.68□□□□□ -0.54
ATXN3-245ENST00000556958 SLC4A2P04920 1241 aa11.63□□□□□ -0.55
ATXN3-245ENST00000556958 CHRDL2Q6WN34 429 aa11.63□□□□□ -0.55
ATXN3-245ENST00000556958 WDR62O43379 1518 aa11.63□□□□□ -0.55
ATXN3-245ENST00000556958 RIMBP3CA6NJZ7 1639 aa11.61□□□□□ -0.55
ATXN3-245ENST00000556958 RIMBP3BA6NNM3 1639 aa11.61□□□□□ -0.55
ATXN3-245ENST00000556958 RIMBP3Q9UFD9 1639 aa11.61□□□□□ -0.55
ATXN3-245ENST00000556958 RBM42Q9BTD8 480 aaKnown RBP11.61□□□□□ -0.55
ATXN3-245ENST00000556958 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
ATXN3-245ENST00000556958 APLP2Q06481 763 aa11.6□□□□□ -0.55
ATXN3-245ENST00000556958 KIF21AQ7Z4S6 1674 aa11.59□□□□□ -0.55
ATXN3-245ENST00000556958 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
ATXN3-245ENST00000556958 CEP164Q9UPV0 1460 aa11.55□□□□□ -0.56
ATXN3-245ENST00000556958 SP7Q8TDD2 431 aaPredicted RBP11.54□□□□□ -0.56
ATXN3-245ENST00000556958 ILDR1Q86SU0 546 aaPredicted RBP11.52□□□□□ -0.57
ATXN3-245ENST00000556958 PEG3Q9GZU2 1588 aa11.5□□□□□ -0.57
ATXN3-245ENST00000556958 FANCD2Q9BXW9 1451 aa11.49□□□□□ -0.57
ATXN3-245ENST00000556958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.46□□□□□ -0.57
ATXN3-245ENST00000556958 HNRNPUL2Q1KMD3 747 aaKnown RBP11.46□□□□□ -0.57
ATXN3-245ENST00000556958 ARAP1Q96P48 1450 aa11.44□□□□□ -0.58
ATXN3-245ENST00000556958 FBLN2P98095 1184 aa11.42□□□□□ -0.58
ATXN3-245ENST00000556958 RSF1Q96T23 1441 aaPredicted RBP11.42□□□□□ -0.58
ATXN3-245ENST00000556958 SAMD1Q6SPF0 538 aaPredicted RBP11.38□□□□□ -0.59
ATXN3-245ENST00000556958 IFT140Q96RY7 1462 aa11.38□□□□□ -0.59
ATXN3-245ENST00000556958 URB2Q14146 1524 aaKnown RBP11.37□□□□□ -0.59
ATXN3-245ENST00000556958 CFTRP13569 1480 aa11.36□□□□□ -0.59
ATXN3-245ENST00000556958 ZNF608Q9ULD9 1512 aaPredicted RBP11.35□□□□□ -0.59
ATXN3-245ENST00000556958 MROH2BQ7Z745 1585 aa11.35□□□□□ -0.59
ATXN3-245ENST00000556958 POLA2Q14181 598 aa11.3□□□□□ -0.6
ATXN3-245ENST00000556958 CHMP7Q8WUX9 453 aaPredicted RBP11.25□□□□□ -0.61
ATXN3-245ENST00000556958 PIP4P2Q8N4L2 257 aa11.24□□□□□ -0.61
ATXN3-245ENST00000556958 AQRO60306 1485 aaKnown RBP eCLIP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 138.1 ms