RNA–Protein interactions for RNA: ENST00000556846.1

PCNX1-213, Transcript of pecanex 1, humanhuman

TSL 3

Gene PCNX1, Length 506 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-213ENST00000556846 AEBP2Q6ZN18 517 aaPredicted RBP21.97■■□□□ 1.11
PCNX1-213ENST00000556846 CHIC1Q5VXU3 224 aa20.49■□□□□ 0.87
PCNX1-213ENST00000556846 SENP3Q9H4L4 574 aaPredicted RBP18.78■□□□□ 0.6
PCNX1-213ENST00000556846 POTEDQ86YR6 584 aa18.61■□□□□ 0.57
PCNX1-213ENST00000556846 PHF23Q9BUL5 403 aaPredicted RBP18.48■□□□□ 0.55
PCNX1-213ENST00000556846 FOXD1Q16676 465 aa17.66■□□□□ 0.42
PCNX1-213ENST00000556846 NISCHQ9Y2I1 1504 aa17.56■□□□□ 0.4
PCNX1-213ENST00000556846 MSH5O43196 834 aa16.98■□□□□ 0.31
PCNX1-213ENST00000556846 PIAS4Q8N2W9 510 aaPredicted RBP16.26■□□□□ 0.19
PCNX1-213ENST00000556846 PLPPR3Q6T4P5 718 aa16.13■□□□□ 0.17
PCNX1-213ENST00000556846 PPP6R1Q9UPN7 881 aa16.11■□□□□ 0.17
PCNX1-213ENST00000556846 ADRA2BP18089 450 aa15.99■□□□□ 0.15
PCNX1-213ENST00000556846 ABCC9O60706 1549 aa15.68■□□□□ 0.1
PCNX1-213ENST00000556846 CCDC180Q9P1Z9 1646 aa15.63■□□□□ 0.09
PCNX1-213ENST00000556846 CACNB1Q02641 598 aaPredicted RBP15.31■□□□□ 0.04
PCNX1-213ENST00000556846 DCAF8L2P0C7V8 631 aa15.02■□□□□ -0
PCNX1-213ENST00000556846 RB1CC1Q8TDY2 1594 aa14.91□□□□□ -0.02
PCNX1-213ENST00000556846 DMRT2Q9Y5R5 561 aa14.85□□□□□ -0.03
PCNX1-213ENST00000556846 NACADO15069 1562 aa14.82□□□□□ -0.04
PCNX1-213ENST00000556846 MAPK8IP2Q13387 824 aaPredicted RBP14.82□□□□□ -0.04
PCNX1-213ENST00000556846 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
PCNX1-213ENST00000556846 SCAF1Q9H7N4 1312 aaKnown RBP14.65□□□□□ -0.06
PCNX1-213ENST00000556846 DNAJC5BQ9UF47 199 aa14.64□□□□□ -0.07
PCNX1-213ENST00000556846 MYO15BQ96JP2 1530 aa14.61□□□□□ -0.07
PCNX1-213ENST00000556846 ZCCHC6Q5VYS8 1495 aaKnown RBP14.54□□□□□ -0.08
PCNX1-213ENST00000556846 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.09
PCNX1-213ENST00000556846 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
PCNX1-213ENST00000556846 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
PCNX1-213ENST00000556846 RNF39Q9H2S5 420 aa14.38□□□□□ -0.11
PCNX1-213ENST00000556846 POTEHQ6S545 545 aa14.34□□□□□ -0.11
PCNX1-213ENST00000556846 SCRIBQ14160 1630 aa14.33□□□□□ -0.12
PCNX1-213ENST00000556846 SHROOM4Q9ULL8 1493 aa14.25□□□□□ -0.13
PCNX1-213ENST00000556846 DCAF8L1A6NGE4 600 aa14.17□□□□□ -0.14
PCNX1-213ENST00000556846 HOXD11P31277 338 aaPredicted RBP14.16□□□□□ -0.14
PCNX1-213ENST00000556846 CECR2Q9BXF3 1484 aa14.12□□□□□ -0.15
PCNX1-213ENST00000556846 CC2D2AQ9P2K1 1620 aa14.11□□□□□ -0.15
PCNX1-213ENST00000556846 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
PCNX1-213ENST00000556846 EIF4G1Q04637 1599 aaKnown RBP14.09□□□□□ -0.15
PCNX1-213ENST00000556846 PPP4R3CPQ6ZMV5 832 aa14.07□□□□□ -0.16
PCNX1-213ENST00000556846 CNKSR2Q8WXI2 1034 aa13.92□□□□□ -0.18
PCNX1-213ENST00000556846 RNF216Q9NWF9 866 aaPredicted RBP13.92□□□□□ -0.18
PCNX1-213ENST00000556846 NCAPD3P42695 1498 aa13.71□□□□□ -0.21
PCNX1-213ENST00000556846 ATAD2BQ9ULI0 1458 aa13.68□□□□□ -0.22
PCNX1-213ENST00000556846 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
PCNX1-213ENST00000556846 SMARCA2P51531 1590 aa13.64□□□□□ -0.23
PCNX1-213ENST00000556846 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
PCNX1-213ENST00000556846 BAZ1BQ9UIG0 1483 aaKnown RBP13.58□□□□□ -0.24
PCNX1-213ENST00000556846 ERCC6Q03468 1493 aa13.57□□□□□ -0.24
PCNX1-213ENST00000556846 HMGXB3Q12766 1538 aa13.56□□□□□ -0.24
PCNX1-213ENST00000556846 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
PCNX1-213ENST00000556846 PEG3Q9GZU2 1588 aa13.48□□□□□ -0.25
PCNX1-213ENST00000556846 NESP48681 1621 aa13.47□□□□□ -0.25
PCNX1-213ENST00000556846 CUX2O14529 1486 aa13.44□□□□□ -0.26
PCNX1-213ENST00000556846 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
PCNX1-213ENST00000556846 DNAJC5Q9H3Z4 198 aa13.4□□□□□ -0.26
PCNX1-213ENST00000556846 NCBP3Q53F19 620 aaKnown RBP13.39□□□□□ -0.27
PCNX1-213ENST00000556846 LAMC3Q9Y6N6 1575 aa13.36□□□□□ -0.27
PCNX1-213ENST00000556846 WIZO95785 1651 aa13.35□□□□□ -0.27
PCNX1-213ENST00000556846 PDS5BQ9NTI5 1447 aa13.35□□□□□ -0.27
PCNX1-213ENST00000556846 CADPSQ9ULU8 1353 aa13.34□□□□□ -0.27
PCNX1-213ENST00000556846 RSF1Q96T23 1441 aaPredicted RBP13.32□□□□□ -0.28
PCNX1-213ENST00000556846 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
PCNX1-213ENST00000556846 NPM3O75607 178 aaKnown RBP13.22□□□□□ -0.29
PCNX1-213ENST00000556846 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.29
PCNX1-213ENST00000556846 TOP2AP11388 1531 aaKnown RBP13.2□□□□□ -0.3
PCNX1-213ENST00000556846 MRC2Q9UBG0 1479 aa13.2□□□□□ -0.3
PCNX1-213ENST00000556846 CEP164Q9UPV0 1460 aa13.17□□□□□ -0.3
PCNX1-213ENST00000556846 CFTRP13569 1480 aa13.16□□□□□ -0.3
PCNX1-213ENST00000556846 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
PCNX1-213ENST00000556846 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
PCNX1-213ENST00000556846 WDR62O43379 1518 aa13.11□□□□□ -0.31
PCNX1-213ENST00000556846 DSG3P32926 999 aa13.1□□□□□ -0.31
PCNX1-213ENST00000556846 CCDC88BA6NC98 1476 aa13.1□□□□□ -0.31
PCNX1-213ENST00000556846 SPINK5Q9NQ38 1064 aaPredicted RBP13.04□□□□□ -0.32
PCNX1-213ENST00000556846 URB2Q14146 1524 aaKnown RBP13.02□□□□□ -0.33
PCNX1-213ENST00000556846 CAPN15O75808 1086 aa13□□□□□ -0.33
PCNX1-213ENST00000556846 OSCARQ8IYS5 282 aa12.97□□□□□ -0.33
PCNX1-213ENST00000556846 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
PCNX1-213ENST00000556846 TRIM41Q8WV44 630 aa12.93□□□□□ -0.34
PCNX1-213ENST00000556846 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
PCNX1-213ENST00000556846 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
PCNX1-213ENST00000556846 TOPBP1Q92547 1522 aa12.91□□□□□ -0.34
PCNX1-213ENST00000556846 PRDM2Q13029 1718 aa12.89□□□□□ -0.35
PCNX1-213ENST00000556846 SP7Q8TDD2 431 aaPredicted RBP12.88□□□□□ -0.35
PCNX1-213ENST00000556846 ZNF608Q9ULD9 1512 aaPredicted RBP12.87□□□□□ -0.35
PCNX1-213ENST00000556846 DNMBPQ6XZF7 1577 aa12.85□□□□□ -0.35
PCNX1-213ENST00000556846 FBLN2P98095 1184 aa12.82□□□□□ -0.36
PCNX1-213ENST00000556846 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.36
PCNX1-213ENST00000556846 SOGA1O94964 1423 aa12.79□□□□□ -0.36
PCNX1-213ENST00000556846 POLA1P09884 1462 aaPredicted RBP12.78□□□□□ -0.36
PCNX1-213ENST00000556846 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.37
PCNX1-213ENST00000556846 RAD54L2Q9Y4B4 1467 aa12.77□□□□□ -0.37
PCNX1-213ENST00000556846 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
PCNX1-213ENST00000556846 EIF4G3O43432 1585 aaKnown RBP12.74□□□□□ -0.37
PCNX1-213ENST00000556846 FGD5Q6ZNL6 1462 aa12.73□□□□□ -0.37
PCNX1-213ENST00000556846 TARBP1Q13395 1621 aaKnown RBP12.73□□□□□ -0.37
PCNX1-213ENST00000556846 CHMP7Q8WUX9 453 aaPredicted RBP12.71□□□□□ -0.37
PCNX1-213ENST00000556846 ZNF219Q9P2Y4 722 aaPredicted RBP12.7□□□□□ -0.38
PCNX1-213ENST00000556846 CUX1P39880 1505 aa12.7□□□□□ -0.38
PCNX1-213ENST00000556846 APLP2Q06481 763 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 176.1 ms