RNA–Protein interactions for RNA: ENST00000555929.1

PCNX4-211, Transcript of pecanex 4, humanhuman

TSL 3

Gene PCNX4, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-211ENST00000555929 AEBP2Q6ZN18 517 aaPredicted RBP20.48■□□□□ 0.87
PCNX4-211ENST00000555929 CHIC1Q5VXU3 224 aa19.48■□□□□ 0.71
PCNX4-211ENST00000555929 NISCHQ9Y2I1 1504 aa17.7■□□□□ 0.42
PCNX4-211ENST00000555929 SENP3Q9H4L4 574 aaPredicted RBP17.59■□□□□ 0.41
PCNX4-211ENST00000555929 PHF23Q9BUL5 403 aaPredicted RBP17.32■□□□□ 0.36
PCNX4-211ENST00000555929 FOXD1Q16676 465 aa16.32■□□□□ 0.2
PCNX4-211ENST00000555929 PLPPR3Q6T4P5 718 aa15.61■□□□□ 0.09
PCNX4-211ENST00000555929 CCDC180Q9P1Z9 1646 aa15.52■□□□□ 0.08
PCNX4-211ENST00000555929 POTEDQ86YR6 584 aa15.44■□□□□ 0.06
PCNX4-211ENST00000555929 MSH5O43196 834 aa15.38■□□□□ 0.05
PCNX4-211ENST00000555929 PIAS4Q8N2W9 510 aaPredicted RBP15.3■□□□□ 0.04
PCNX4-211ENST00000555929 PPP6R1Q9UPN7 881 aa15.19■□□□□ 0.02
PCNX4-211ENST00000555929 ADRA2BP18089 450 aa15.18■□□□□ 0.02
PCNX4-211ENST00000555929 ABCC9O60706 1549 aa15.17■□□□□ 0.02
PCNX4-211ENST00000555929 DCAF8L2P0C7V8 631 aa14.98□□□□□ -0.01
PCNX4-211ENST00000555929 ZCCHC6Q5VYS8 1495 aaKnown RBP14.77□□□□□ -0.04
PCNX4-211ENST00000555929 NACADO15069 1562 aa14.6□□□□□ -0.07
PCNX4-211ENST00000555929 RB1CC1Q8TDY2 1594 aa14.59□□□□□ -0.07
PCNX4-211ENST00000555929 DCAF1Q9Y4B6 1507 aa14.57□□□□□ -0.08
PCNX4-211ENST00000555929 MYO15BQ96JP2 1530 aa14.54□□□□□ -0.08
PCNX4-211ENST00000555929 SHROOM4Q9ULL8 1493 aa14.33□□□□□ -0.12
PCNX4-211ENST00000555929 SCRIBQ14160 1630 aa14.33□□□□□ -0.12
PCNX4-211ENST00000555929 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
PCNX4-211ENST00000555929 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
PCNX4-211ENST00000555929 BICRAQ9NZM4 1560 aa14.1□□□□□ -0.15
PCNX4-211ENST00000555929 SCAF1Q9H7N4 1312 aaKnown RBP14.03□□□□□ -0.16
PCNX4-211ENST00000555929 MAPK8IP2Q13387 824 aaPredicted RBP13.94□□□□□ -0.18
PCNX4-211ENST00000555929 DMRT2Q9Y5R5 561 aa13.91□□□□□ -0.18
PCNX4-211ENST00000555929 CECR2Q9BXF3 1484 aa13.82□□□□□ -0.2
PCNX4-211ENST00000555929 EIF4G1Q04637 1599 aaKnown RBP13.75□□□□□ -0.21
PCNX4-211ENST00000555929 DNAJC5BQ9UF47 199 aa13.74□□□□□ -0.21
PCNX4-211ENST00000555929 BAZ1AQ9NRL2 1556 aaPredicted RBP13.7□□□□□ -0.22
PCNX4-211ENST00000555929 MROH2BQ7Z745 1585 aa13.67□□□□□ -0.22
PCNX4-211ENST00000555929 SMARCA4P51532 1647 aa13.66□□□□□ -0.22
PCNX4-211ENST00000555929 CC2D2AQ9P2K1 1620 aa13.64□□□□□ -0.23
PCNX4-211ENST00000555929 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
PCNX4-211ENST00000555929 PPP4R3CPQ6ZMV5 832 aa13.64□□□□□ -0.23
PCNX4-211ENST00000555929 RSF1Q96T23 1441 aaPredicted RBP13.62□□□□□ -0.23
PCNX4-211ENST00000555929 ATAD2BQ9ULI0 1458 aa13.57□□□□□ -0.24
PCNX4-211ENST00000555929 SMARCA2P51531 1590 aa13.54□□□□□ -0.24
PCNX4-211ENST00000555929 WIZO95785 1651 aa13.52□□□□□ -0.25
PCNX4-211ENST00000555929 NCAPD3P42695 1498 aa13.5□□□□□ -0.25
PCNX4-211ENST00000555929 BAZ1BQ9UIG0 1483 aaKnown RBP13.5□□□□□ -0.25
PCNX4-211ENST00000555929 PEG3Q9GZU2 1588 aa13.46□□□□□ -0.25
PCNX4-211ENST00000555929 CNKSR2Q8WXI2 1034 aa13.42□□□□□ -0.26
PCNX4-211ENST00000555929 HMGXB3Q12766 1538 aa13.42□□□□□ -0.26
PCNX4-211ENST00000555929 DCAF8L1A6NGE4 600 aa13.41□□□□□ -0.26
PCNX4-211ENST00000555929 HOXD11P31277 338 aaPredicted RBP13.37□□□□□ -0.27
PCNX4-211ENST00000555929 TOP2AP11388 1531 aaKnown RBP13.37□□□□□ -0.27
PCNX4-211ENST00000555929 RNF216Q9NWF9 866 aaPredicted RBP13.3□□□□□ -0.28
PCNX4-211ENST00000555929 CCDC88BA6NC98 1476 aa13.28□□□□□ -0.28
PCNX4-211ENST00000555929 CACNB1Q02641 598 aaPredicted RBP13.22□□□□□ -0.29
PCNX4-211ENST00000555929 NCBP3Q53F19 620 aaKnown RBP13.19□□□□□ -0.3
PCNX4-211ENST00000555929 CADPSQ9ULU8 1353 aa13.19□□□□□ -0.3
PCNX4-211ENST00000555929 NESP48681 1621 aa13.17□□□□□ -0.3
PCNX4-211ENST00000555929 CFTRP13569 1480 aa13.1□□□□□ -0.31
PCNX4-211ENST00000555929 LAMC3Q9Y6N6 1575 aa13.08□□□□□ -0.32
PCNX4-211ENST00000555929 PDS5BQ9NTI5 1447 aa13.07□□□□□ -0.32
PCNX4-211ENST00000555929 ERCC6Q03468 1493 aa13.07□□□□□ -0.32
PCNX4-211ENST00000555929 RNF39Q9H2S5 420 aa13.06□□□□□ -0.32
PCNX4-211ENST00000555929 FANCD2Q9BXW9 1451 aa13.02□□□□□ -0.33
PCNX4-211ENST00000555929 CEP164Q9UPV0 1460 aa12.97□□□□□ -0.33
PCNX4-211ENST00000555929 KIF21AQ7Z4S6 1674 aa12.93□□□□□ -0.34
PCNX4-211ENST00000555929 C1QBPQ07021 282 aaKnown RBP12.92□□□□□ -0.34
PCNX4-211ENST00000555929 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
PCNX4-211ENST00000555929 NPM3O75607 178 aaKnown RBP12.89□□□□□ -0.35
PCNX4-211ENST00000555929 PRDM2Q13029 1718 aa12.88□□□□□ -0.35
PCNX4-211ENST00000555929 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
PCNX4-211ENST00000555929 URB2Q14146 1524 aaKnown RBP12.86□□□□□ -0.35
PCNX4-211ENST00000555929 WRNQ14191 1432 aaPredicted RBP eCLIP12.85□□□□□ -0.35
PCNX4-211ENST00000555929 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
PCNX4-211ENST00000555929 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.82□□□□□ -0.36
PCNX4-211ENST00000555929 TOPBP1Q92547 1522 aa12.82□□□□□ -0.36
PCNX4-211ENST00000555929 THOC2Q8NI27 1593 aaKnown RBP12.81□□□□□ -0.36
PCNX4-211ENST00000555929 CUX1P39880 1505 aa12.8□□□□□ -0.36
PCNX4-211ENST00000555929 DNMBPQ6XZF7 1577 aa12.79□□□□□ -0.36
PCNX4-211ENST00000555929 WDR62O43379 1518 aa12.78□□□□□ -0.36
PCNX4-211ENST00000555929 SYNJ1O43426 1573 aa12.76□□□□□ -0.37
PCNX4-211ENST00000555929 FGD5Q6ZNL6 1462 aa12.75□□□□□ -0.37
PCNX4-211ENST00000555929 CUX2O14529 1486 aa12.74□□□□□ -0.37
PCNX4-211ENST00000555929 SOGA1O94964 1423 aa12.74□□□□□ -0.37
PCNX4-211ENST00000555929 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
PCNX4-211ENST00000555929 RAD54L2Q9Y4B4 1467 aa12.72□□□□□ -0.37
PCNX4-211ENST00000555929 TOP2BQ02880 1626 aa12.72□□□□□ -0.37
PCNX4-211ENST00000555929 IFT140Q96RY7 1462 aa12.69□□□□□ -0.38
PCNX4-211ENST00000555929 BIVM-ERCC5R4GMW8 1640 aa12.68□□□□□ -0.38
PCNX4-211ENST00000555929 TDRD9Q8NDG6 1382 aaKnown RBP12.68□□□□□ -0.38
PCNX4-211ENST00000555929 ZNF608Q9ULD9 1512 aaPredicted RBP12.63□□□□□ -0.39
PCNX4-211ENST00000555929 FAM9AQ8IZU1 332 aaPredicted RBP12.63□□□□□ -0.39
PCNX4-211ENST00000555929 AQRO60306 1485 aaKnown RBP eCLIP12.63□□□□□ -0.39
PCNX4-211ENST00000555929 KCNA4P22459 653 aa12.61□□□□□ -0.39
PCNX4-211ENST00000555929 TARBP1Q13395 1621 aaKnown RBP12.6□□□□□ -0.39
PCNX4-211ENST00000555929 ABCA10Q8WWZ4 1543 aa12.6□□□□□ -0.39
PCNX4-211ENST00000555929 KIF27Q86VH2 1401 aa12.57□□□□□ -0.4
PCNX4-211ENST00000555929 FBLN2P98095 1184 aa12.56□□□□□ -0.4
PCNX4-211ENST00000555929 GAPVD1Q14C86 1478 aa12.56□□□□□ -0.4
PCNX4-211ENST00000555929 RUSC2Q8N2Y8 1516 aa12.54□□□□□ -0.4
PCNX4-211ENST00000555929 EIF4G3O43432 1585 aaKnown RBP12.52□□□□□ -0.4
PCNX4-211ENST00000555929 EHMT2Q96KQ7 1210 aa12.52□□□□□ -0.41
PCNX4-211ENST00000555929 GRIN2BQ13224 1484 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms