RNA–Protein interactions for RNA: ENST00000554879.5

PCNX1-209, Transcript of pecanex 1, humanhuman

TSL 1 (best)

Gene PCNX1, Length 4,431 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-209ENST00000554879 NISCHQ9Y2I1 1504 aa33.86■■■■□ 3.01
PCNX1-209ENST00000554879 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
PCNX1-209ENST00000554879 SHROOM4Q9ULL8 1493 aa29.66■■■□□ 2.34
PCNX1-209ENST00000554879 SUPT5HO00267 1087 aaKnown RBP29.05■■■□□ 2.24
PCNX1-209ENST00000554879 CCDC180Q9P1Z9 1646 aa28.63■■■□□ 2.17
PCNX1-209ENST00000554879 ABCC9O60706 1549 aa28.45■■■□□ 2.14
PCNX1-209ENST00000554879 ZCCHC6Q5VYS8 1495 aaKnown RBP28.28■■■□□ 2.12
PCNX1-209ENST00000554879 SCRIBQ14160 1630 aa27.51■■□□□ 1.99
PCNX1-209ENST00000554879 PABPN1Q86U42 306 aaKnown RBP eCLIP27.46■■□□□ 1.99
PCNX1-209ENST00000554879 DCAF1Q9Y4B6 1507 aa27.31■■□□□ 1.96
PCNX1-209ENST00000554879 EHMT2Q96KQ7 1210 aa27.23■■□□□ 1.95
PCNX1-209ENST00000554879 NACADO15069 1562 aa27.11■■□□□ 1.93
PCNX1-209ENST00000554879 FAM9AQ8IZU1 332 aaPredicted RBP27.08■■□□□ 1.93
PCNX1-209ENST00000554879 RB1CC1Q8TDY2 1594 aa27.04■■□□□ 1.92
PCNX1-209ENST00000554879 CHIC1Q5VXU3 224 aa27.04■■□□□ 1.92
PCNX1-209ENST00000554879 TRIM41Q8WV44 630 aa26.96■■□□□ 1.91
PCNX1-209ENST00000554879 MYO15BQ96JP2 1530 aa26.75■■□□□ 1.87
PCNX1-209ENST00000554879 RSF1Q96T23 1441 aaPredicted RBP26.69■■□□□ 1.86
PCNX1-209ENST00000554879 CECR2Q9BXF3 1484 aa26.66■■□□□ 1.86
PCNX1-209ENST00000554879 PELP1Q8IZL8 1130 aaKnown RBP26.6■■□□□ 1.85
PCNX1-209ENST00000554879 LOC105371045A0A1W2PR82 267 aa26.56■■□□□ 1.84
PCNX1-209ENST00000554879 MROH2BQ7Z745 1585 aa26.34■■□□□ 1.81
PCNX1-209ENST00000554879 BAZ1AQ9NRL2 1556 aaPredicted RBP26.2■■□□□ 1.79
PCNX1-209ENST00000554879 RANGAP1P46060 587 aaPredicted RBP26.19■■□□□ 1.78
PCNX1-209ENST00000554879 PCGF6Q9BYE7 350 aa26.12■■□□□ 1.77
PCNX1-209ENST00000554879 UBTFP17480 764 aaKnown RBP26.11■■□□□ 1.77
PCNX1-209ENST00000554879 TTBK1Q5TCY1 1321 aaPredicted RBP26.1■■□□□ 1.77
PCNX1-209ENST00000554879 WIZO95785 1651 aa26.06■■□□□ 1.76
PCNX1-209ENST00000554879 PPARGC1BQ86YN6 1023 aaKnown RBP25.95■■□□□ 1.74
PCNX1-209ENST00000554879 MYT1Q01538 1121 aa25.91■■□□□ 1.74
PCNX1-209ENST00000554879 BAZ1BQ9UIG0 1483 aaKnown RBP25.87■■□□□ 1.73
PCNX1-209ENST00000554879 SMARCA4P51532 1647 aa25.83■■□□□ 1.73
PCNX1-209ENST00000554879 HRCP23327 699 aa25.81■■□□□ 1.72
PCNX1-209ENST00000554879 CCDC88BA6NC98 1476 aa25.77■■□□□ 1.72
PCNX1-209ENST00000554879 APLP2Q06481 763 aa25.71■■□□□ 1.71
PCNX1-209ENST00000554879 BICRAQ9NZM4 1560 aa25.69■■□□□ 1.7
PCNX1-209ENST00000554879 TOP2AP11388 1531 aaKnown RBP25.65■■□□□ 1.7
PCNX1-209ENST00000554879 UNC13AQ9UPW8 1703 aa25.65■■□□□ 1.7
PCNX1-209ENST00000554879 ATAD2BQ9ULI0 1458 aa25.62■■□□□ 1.69
PCNX1-209ENST00000554879 CSRNP3Q8WYN3 585 aa25.6■■□□□ 1.69
PCNX1-209ENST00000554879 SMARCA2P51531 1590 aa25.54■■□□□ 1.68
PCNX1-209ENST00000554879 ABCC8Q09428 1581 aa25.52■■□□□ 1.68
PCNX1-209ENST00000554879 ATP1B4Q9UN42 357 aaPredicted RBP25.48■■□□□ 1.67
PCNX1-209ENST00000554879 WRNQ14191 1432 aaPredicted RBP eCLIP25.46■■□□□ 1.67
PCNX1-209ENST00000554879 TRIM26Q12899 539 aaPredicted RBP25.46■■□□□ 1.67
PCNX1-209ENST00000554879 EIF4G1Q04637 1599 aaKnown RBP25.35■■□□□ 1.65
PCNX1-209ENST00000554879 SOGA1O94964 1423 aa25.3■■□□□ 1.64
PCNX1-209ENST00000554879 NCAPD3P42695 1498 aa25.16■■□□□ 1.62
PCNX1-209ENST00000554879 CCER1Q8TC90 406 aaPredicted RBP25.09■■□□□ 1.61
PCNX1-209ENST00000554879 P3H3Q8IVL6 736 aa25.05■■□□□ 1.6
PCNX1-209ENST00000554879 CADPSQ9ULU8 1353 aa25.03■■□□□ 1.6
PCNX1-209ENST00000554879 EEA1Q15075 1411 aa25.03■■□□□ 1.6
PCNX1-209ENST00000554879 RUSC2Q8N2Y8 1516 aa25.02■■□□□ 1.6
PCNX1-209ENST00000554879 HNRNPUL2Q1KMD3 747 aaKnown RBP25■■□□□ 1.59
PCNX1-209ENST00000554879 CC2D2AQ9P2K1 1620 aa24.96■■□□□ 1.59
PCNX1-209ENST00000554879 ITGAEP38570 1179 aa24.94■■□□□ 1.58
PCNX1-209ENST00000554879 CEP162Q5TB80 1403 aa24.94■■□□□ 1.58
PCNX1-209ENST00000554879 DNAJC5BQ9UF47 199 aa24.93■■□□□ 1.58
PCNX1-209ENST00000554879 GOLGA3Q08378 1498 aa24.93■■□□□ 1.58
PCNX1-209ENST00000554879 SCAF1Q9H7N4 1312 aaKnown RBP24.93■■□□□ 1.58
PCNX1-209ENST00000554879 FBLN2P98095 1184 aa24.92■■□□□ 1.58
PCNX1-209ENST00000554879 PEG3Q9GZU2 1588 aa24.91■■□□□ 1.58
PCNX1-209ENST00000554879 KIF27Q86VH2 1401 aa24.9■■□□□ 1.58
PCNX1-209ENST00000554879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.87■■□□□ 1.57
PCNX1-209ENST00000554879 HMGXB3Q12766 1538 aa24.86■■□□□ 1.57
PCNX1-209ENST00000554879 TNIKQ9UKE5 1360 aa24.85■■□□□ 1.57
PCNX1-209ENST00000554879 CLIP1P30622 1438 aa24.84■■□□□ 1.57
PCNX1-209ENST00000554879 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.57
PCNX1-209ENST00000554879 CUX2O14529 1486 aa24.83■■□□□ 1.56
PCNX1-209ENST00000554879 ZEB1P37275 1124 aaPredicted RBP24.77■■□□□ 1.56
PCNX1-209ENST00000554879 SYNJ1O43426 1573 aa24.76■■□□□ 1.55
PCNX1-209ENST00000554879 FANCD2Q9BXW9 1451 aa24.75■■□□□ 1.55
PCNX1-209ENST00000554879 CFTRP13569 1480 aa24.75■■□□□ 1.55
PCNX1-209ENST00000554879 NESP48681 1621 aa24.74■■□□□ 1.55
PCNX1-209ENST00000554879 ARID3CA6NKF2 412 aa24.7■■□□□ 1.54
PCNX1-209ENST00000554879 CENPBP07199 599 aaPredicted RBP24.7■■□□□ 1.54
PCNX1-209ENST00000554879 PDS5BQ9NTI5 1447 aa24.7■■□□□ 1.54
PCNX1-209ENST00000554879 TDRD9Q8NDG6 1382 aaKnown RBP24.65■■□□□ 1.54
PCNX1-209ENST00000554879 RAPGEF2Q9Y4G8 1499 aa24.64■■□□□ 1.54
PCNX1-209ENST00000554879 ERCC6Q03468 1493 aa24.64■■□□□ 1.53
PCNX1-209ENST00000554879 CARMIL1Q5VZK9 1371 aa24.63■■□□□ 1.53
PCNX1-209ENST00000554879 GTF3C3Q9Y5Q9 886 aa24.59■■□□□ 1.53
PCNX1-209ENST00000554879 FAM50AQ14320 339 aaKnown RBP24.58■■□□□ 1.53
PCNX1-209ENST00000554879 FGD5Q6ZNL6 1462 aa24.55■■□□□ 1.52
PCNX1-209ENST00000554879 CUX1P39880 1505 aa24.53■■□□□ 1.52
PCNX1-209ENST00000554879 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
PCNX1-209ENST00000554879 YTHDC1Q96MU7 727 aaKnown RBP24.5■■□□□ 1.51
PCNX1-209ENST00000554879 CHMP7Q8WUX9 453 aaPredicted RBP24.46■■□□□ 1.51
PCNX1-209ENST00000554879 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
PCNX1-209ENST00000554879 IGF1RP08069 1367 aa24.41■■□□□ 1.5
PCNX1-209ENST00000554879 VPS8Q8N3P4 1428 aa24.33■■□□□ 1.49
PCNX1-209ENST00000554879 ACIN1Q9UKV3 1341 aaKnown RBP24.29■■□□□ 1.48
PCNX1-209ENST00000554879 TOPBP1Q92547 1522 aa24.29■■□□□ 1.48
PCNX1-209ENST00000554879 KANK4Q5T7N3 995 aaPredicted RBP24.28■■□□□ 1.48
PCNX1-209ENST00000554879 POLA1P09884 1462 aaPredicted RBP24.24■■□□□ 1.47
PCNX1-209ENST00000554879 NEUROD1Q13562 356 aa24.21■■□□□ 1.47
PCNX1-209ENST00000554879 KIF21BO75037 1637 aa24.18■■□□□ 1.46
PCNX1-209ENST00000554879 AQRO60306 1485 aaKnown RBP eCLIP24.17■■□□□ 1.46
PCNX1-209ENST00000554879 PRXQ9BXM0 1461 aa24.17■■□□□ 1.46
PCNX1-209ENST00000554879 GAPVD1Q14C86 1478 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms