RNA–Protein interactions for RNA: ENST00000551320.1

PRPF40B-214, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-214ENST00000551320 AEBP2Q6ZN18 517 aaPredicted RBP18.99■□□□□ 0.63
PRPF40B-214ENST00000551320 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
PRPF40B-214ENST00000551320 NISCHQ9Y2I1 1504 aa17.18■□□□□ 0.34
PRPF40B-214ENST00000551320 PHF23Q9BUL5 403 aaPredicted RBP16.5■□□□□ 0.23
PRPF40B-214ENST00000551320 SENP3Q9H4L4 574 aaPredicted RBP16.05■□□□□ 0.16
PRPF40B-214ENST00000551320 ABCC9O60706 1549 aa15.68■□□□□ 0.1
PRPF40B-214ENST00000551320 CCDC180Q9P1Z9 1646 aa15.32■□□□□ 0.04
PRPF40B-214ENST00000551320 PLPPR3Q6T4P5 718 aa15.29■□□□□ 0.04
PRPF40B-214ENST00000551320 FOXD1Q16676 465 aa14.89□□□□□ -0.03
PRPF40B-214ENST00000551320 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
PRPF40B-214ENST00000551320 DCAF8L2P0C7V8 631 aa14.8□□□□□ -0.04
PRPF40B-214ENST00000551320 RB1CC1Q8TDY2 1594 aa14.68□□□□□ -0.06
PRPF40B-214ENST00000551320 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
PRPF40B-214ENST00000551320 NACADO15069 1562 aa14.52□□□□□ -0.08
PRPF40B-214ENST00000551320 ADRA2BP18089 450 aa14.5□□□□□ -0.09
PRPF40B-214ENST00000551320 PPP6R1Q9UPN7 881 aa14.5□□□□□ -0.09
PRPF40B-214ENST00000551320 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
PRPF40B-214ENST00000551320 BICRAQ9NZM4 1560 aa14.37□□□□□ -0.11
PRPF40B-214ENST00000551320 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
PRPF40B-214ENST00000551320 MYO15BQ96JP2 1530 aa14.2□□□□□ -0.14
PRPF40B-214ENST00000551320 SCRIBQ14160 1630 aa14.19□□□□□ -0.14
PRPF40B-214ENST00000551320 PIAS4Q8N2W9 510 aaPredicted RBP14.09□□□□□ -0.15
PRPF40B-214ENST00000551320 CC2D2AQ9P2K1 1620 aa14.07□□□□□ -0.16
PRPF40B-214ENST00000551320 CECR2Q9BXF3 1484 aa14.05□□□□□ -0.16
PRPF40B-214ENST00000551320 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
PRPF40B-214ENST00000551320 EIF4G1Q04637 1599 aaKnown RBP13.98□□□□□ -0.17
PRPF40B-214ENST00000551320 SHROOM4Q9ULL8 1493 aa13.88□□□□□ -0.19
PRPF40B-214ENST00000551320 MSH5O43196 834 aa13.63□□□□□ -0.23
PRPF40B-214ENST00000551320 DNAJC5Q9H3Z4 198 aa13.56□□□□□ -0.24
PRPF40B-214ENST00000551320 PPP4R3CPQ6ZMV5 832 aa13.51□□□□□ -0.25
PRPF40B-214ENST00000551320 NESP48681 1621 aa13.48□□□□□ -0.25
PRPF40B-214ENST00000551320 ATAD2BQ9ULI0 1458 aa13.48□□□□□ -0.25
PRPF40B-214ENST00000551320 NCAPD3P42695 1498 aa13.46□□□□□ -0.25
PRPF40B-214ENST00000551320 ERCC6Q03468 1493 aa13.46□□□□□ -0.25
PRPF40B-214ENST00000551320 KCNA4P22459 653 aa13.45□□□□□ -0.26
PRPF40B-214ENST00000551320 SMARCA4P51532 1647 aa13.42□□□□□ -0.26
PRPF40B-214ENST00000551320 SMARCA2P51531 1590 aa13.34□□□□□ -0.27
PRPF40B-214ENST00000551320 CUX2O14529 1486 aa13.34□□□□□ -0.27
PRPF40B-214ENST00000551320 MROH2BQ7Z745 1585 aa13.33□□□□□ -0.28
PRPF40B-214ENST00000551320 BAZ1BQ9UIG0 1483 aaKnown RBP13.33□□□□□ -0.28
PRPF40B-214ENST00000551320 HMGXB3Q12766 1538 aa13.31□□□□□ -0.28
PRPF40B-214ENST00000551320 BAZ1AQ9NRL2 1556 aaPredicted RBP13.28□□□□□ -0.28
PRPF40B-214ENST00000551320 SCAF1Q9H7N4 1312 aaKnown RBP13.23□□□□□ -0.29
PRPF40B-214ENST00000551320 THOC2Q8NI27 1593 aaKnown RBP13.2□□□□□ -0.3
PRPF40B-214ENST00000551320 NCBP3Q53F19 620 aaKnown RBP13.2□□□□□ -0.3
PRPF40B-214ENST00000551320 KIF21AQ7Z4S6 1674 aa13.2□□□□□ -0.3
PRPF40B-214ENST00000551320 PEG3Q9GZU2 1588 aa13.18□□□□□ -0.3
PRPF40B-214ENST00000551320 WIZO95785 1651 aa13.18□□□□□ -0.3
PRPF40B-214ENST00000551320 LAMC3Q9Y6N6 1575 aa13.14□□□□□ -0.31
PRPF40B-214ENST00000551320 CADPSQ9ULU8 1353 aa13.1□□□□□ -0.31
PRPF40B-214ENST00000551320 MAPK8IP2Q13387 824 aaPredicted RBP13.1□□□□□ -0.31
PRPF40B-214ENST00000551320 TRIM41Q8WV44 630 aa13.1□□□□□ -0.31
PRPF40B-214ENST00000551320 PDS5BQ9NTI5 1447 aa13.1□□□□□ -0.31
PRPF40B-214ENST00000551320 CNKSR2Q8WXI2 1034 aa13.07□□□□□ -0.32
PRPF40B-214ENST00000551320 NPM3O75607 178 aaKnown RBP13.03□□□□□ -0.32
PRPF40B-214ENST00000551320 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
PRPF40B-214ENST00000551320 RSF1Q96T23 1441 aaPredicted RBP13□□□□□ -0.33
PRPF40B-214ENST00000551320 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
PRPF40B-214ENST00000551320 WDR62O43379 1518 aa12.97□□□□□ -0.33
PRPF40B-214ENST00000551320 CEP164Q9UPV0 1460 aa12.97□□□□□ -0.33
PRPF40B-214ENST00000551320 URB2Q14146 1524 aaKnown RBP12.92□□□□□ -0.34
PRPF40B-214ENST00000551320 CFTRP13569 1480 aa12.91□□□□□ -0.34
PRPF40B-214ENST00000551320 TOP2AP11388 1531 aaKnown RBP12.89□□□□□ -0.35
PRPF40B-214ENST00000551320 DMRT2Q9Y5R5 561 aa12.84□□□□□ -0.35
PRPF40B-214ENST00000551320 CCDC88BA6NC98 1476 aa12.84□□□□□ -0.35
PRPF40B-214ENST00000551320 OSCARQ8IYS5 282 aa12.83□□□□□ -0.36
PRPF40B-214ENST00000551320 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
PRPF40B-214ENST00000551320 ZNF608Q9ULD9 1512 aaPredicted RBP12.82□□□□□ -0.36
PRPF40B-214ENST00000551320 RNF216Q9NWF9 866 aaPredicted RBP12.76□□□□□ -0.37
PRPF40B-214ENST00000551320 EHMT2Q96KQ7 1210 aa12.74□□□□□ -0.37
PRPF40B-214ENST00000551320 TOPBP1Q92547 1522 aa12.72□□□□□ -0.37
PRPF40B-214ENST00000551320 AQRO60306 1485 aaKnown RBP eCLIP12.71□□□□□ -0.38
PRPF40B-214ENST00000551320 FBLN2P98095 1184 aa12.69□□□□□ -0.38
PRPF40B-214ENST00000551320 RIMBP3CA6NJZ7 1639 aa12.69□□□□□ -0.38
PRPF40B-214ENST00000551320 RIMBP3BA6NNM3 1639 aa12.69□□□□□ -0.38
PRPF40B-214ENST00000551320 RIMBP3Q9UFD9 1639 aa12.69□□□□□ -0.38
PRPF40B-214ENST00000551320 PRDM2Q13029 1718 aa12.68□□□□□ -0.38
PRPF40B-214ENST00000551320 IFT140Q96RY7 1462 aa12.67□□□□□ -0.38
PRPF40B-214ENST00000551320 HOXD11P31277 338 aaPredicted RBP12.66□□□□□ -0.38
PRPF40B-214ENST00000551320 CYB5RLQ6IPT4 315 aa12.65□□□□□ -0.38
PRPF40B-214ENST00000551320 RAD54L2Q9Y4B4 1467 aa12.65□□□□□ -0.38
PRPF40B-214ENST00000551320 EIF4G3O43432 1585 aaKnown RBP12.64□□□□□ -0.39
PRPF40B-214ENST00000551320 TDRD9Q8NDG6 1382 aaKnown RBP12.62□□□□□ -0.39
PRPF40B-214ENST00000551320 ARHGEF11O15085 1522 aa12.62□□□□□ -0.39
PRPF40B-214ENST00000551320 DNMBPQ6XZF7 1577 aa12.61□□□□□ -0.39
PRPF40B-214ENST00000551320 POLA1P09884 1462 aaPredicted RBP12.59□□□□□ -0.39
PRPF40B-214ENST00000551320 TARBP1Q13395 1621 aaKnown RBP12.59□□□□□ -0.39
PRPF40B-214ENST00000551320 CHD1O14646 1710 aa12.59□□□□□ -0.39
PRPF40B-214ENST00000551320 SOGA1O94964 1423 aa12.55□□□□□ -0.4
PRPF40B-214ENST00000551320 SUPT5HO00267 1087 aaKnown RBP12.55□□□□□ -0.4
PRPF40B-214ENST00000551320 TRHP20396 242 aaPredicted RBP12.54□□□□□ -0.4
PRPF40B-214ENST00000551320 ARAP1Q96P48 1450 aa12.53□□□□□ -0.4
PRPF40B-214ENST00000551320 ABCC8Q09428 1581 aa12.52□□□□□ -0.4
PRPF40B-214ENST00000551320 FGD5Q6ZNL6 1462 aa12.52□□□□□ -0.41
PRPF40B-214ENST00000551320 CUX1P39880 1505 aa12.52□□□□□ -0.41
PRPF40B-214ENST00000551320 SNAPC4Q5SXM2 1469 aa12.51□□□□□ -0.41
PRPF40B-214ENST00000551320 CHMP7Q8WUX9 453 aaPredicted RBP12.47□□□□□ -0.41
PRPF40B-214ENST00000551320 CSRNP3Q8WYN3 585 aa12.47□□□□□ -0.41
PRPF40B-214ENST00000551320 CLASP1Q7Z460 1538 aa12.4□□□□□ -0.42
PRPF40B-214ENST00000551320 ZBTB22O15209 634 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms