RNA–Protein interactions for RNA: ENST00000551179.1

CNOT2-229, Transcript of CCR4-NOT transcription complex subunit 2, humanhuman

TSL 2

Gene CNOT2, Length 355 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT2-229ENST00000551179 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
CNOT2-229ENST00000551179 CHIC1Q5VXU3 224 aa24.15■■□□□ 1.46
CNOT2-229ENST00000551179 NISCHQ9Y2I1 1504 aa22.09■■□□□ 1.13
CNOT2-229ENST00000551179 PHF23Q9BUL5 403 aaPredicted RBP21.21■□□□□ 0.99
CNOT2-229ENST00000551179 SENP3Q9H4L4 574 aaPredicted RBP21.07■□□□□ 0.96
CNOT2-229ENST00000551179 POTEDQ86YR6 584 aa19.62■□□□□ 0.73
CNOT2-229ENST00000551179 PLPPR3Q6T4P5 718 aa19.6■□□□□ 0.73
CNOT2-229ENST00000551179 FOXD1Q16676 465 aa19.55■□□□□ 0.72
CNOT2-229ENST00000551179 CCDC180Q9P1Z9 1646 aa19.21■□□□□ 0.67
CNOT2-229ENST00000551179 ADRA2BP18089 450 aa18.76■□□□□ 0.59
CNOT2-229ENST00000551179 PPP6R1Q9UPN7 881 aa18.75■□□□□ 0.59
CNOT2-229ENST00000551179 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
CNOT2-229ENST00000551179 PIAS4Q8N2W9 510 aaPredicted RBP18.44■□□□□ 0.54
CNOT2-229ENST00000551179 DCAF1Q9Y4B6 1507 aa18.32■□□□□ 0.52
CNOT2-229ENST00000551179 SHROOM4Q9ULL8 1493 aa18.26■□□□□ 0.51
CNOT2-229ENST00000551179 DCAF8L2P0C7V8 631 aa18.19■□□□□ 0.5
CNOT2-229ENST00000551179 MSH5O43196 834 aa18.07■□□□□ 0.48
CNOT2-229ENST00000551179 MYO15BQ96JP2 1530 aa17.98■□□□□ 0.47
CNOT2-229ENST00000551179 NACADO15069 1562 aa17.8■□□□□ 0.44
CNOT2-229ENST00000551179 ABCC9O60706 1549 aa17.79■□□□□ 0.44
CNOT2-229ENST00000551179 SUPT5HO00267 1087 aaKnown RBP17.75■□□□□ 0.43
CNOT2-229ENST00000551179 SCRIBQ14160 1630 aa17.67■□□□□ 0.42
CNOT2-229ENST00000551179 RB1CC1Q8TDY2 1594 aa17.61■□□□□ 0.41
CNOT2-229ENST00000551179 PPP4R3CPQ6ZMV5 832 aa17.27■□□□□ 0.36
CNOT2-229ENST00000551179 SCAF1Q9H7N4 1312 aaKnown RBP17.21■□□□□ 0.35
CNOT2-229ENST00000551179 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
CNOT2-229ENST00000551179 BAZ1AQ9NRL2 1556 aaPredicted RBP17.13■□□□□ 0.33
CNOT2-229ENST00000551179 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
CNOT2-229ENST00000551179 CECR2Q9BXF3 1484 aa17.05■□□□□ 0.32
CNOT2-229ENST00000551179 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
CNOT2-229ENST00000551179 MROH2BQ7Z745 1585 aa17.03■□□□□ 0.32
CNOT2-229ENST00000551179 SMARCA4P51532 1647 aa16.94■□□□□ 0.3
CNOT2-229ENST00000551179 WIZO95785 1651 aa16.92■□□□□ 0.3
CNOT2-229ENST00000551179 TOP2AP11388 1531 aaKnown RBP16.86■□□□□ 0.29
CNOT2-229ENST00000551179 BICRAQ9NZM4 1560 aa16.86■□□□□ 0.29
CNOT2-229ENST00000551179 NCBP3Q53F19 620 aaKnown RBP16.84■□□□□ 0.29
CNOT2-229ENST00000551179 CNKSR2Q8WXI2 1034 aa16.79■□□□□ 0.28
CNOT2-229ENST00000551179 KCNA4P22459 653 aa16.78■□□□□ 0.28
CNOT2-229ENST00000551179 PABPN1Q86U42 306 aaKnown RBP eCLIP16.78■□□□□ 0.28
CNOT2-229ENST00000551179 DMRT2Q9Y5R5 561 aa16.78■□□□□ 0.28
CNOT2-229ENST00000551179 TRIM41Q8WV44 630 aa16.72■□□□□ 0.27
CNOT2-229ENST00000551179 PEG3Q9GZU2 1588 aa16.69■□□□□ 0.26
CNOT2-229ENST00000551179 SMARCA2P51531 1590 aa16.66■□□□□ 0.26
CNOT2-229ENST00000551179 CCDC88BA6NC98 1476 aa16.6■□□□□ 0.25
CNOT2-229ENST00000551179 EIF4G1Q04637 1599 aaKnown RBP16.59■□□□□ 0.25
CNOT2-229ENST00000551179 BAZ1BQ9UIG0 1483 aaKnown RBP16.57■□□□□ 0.24
CNOT2-229ENST00000551179 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
CNOT2-229ENST00000551179 NPM3O75607 178 aaKnown RBP16.52■□□□□ 0.24
CNOT2-229ENST00000551179 RNF216Q9NWF9 866 aaPredicted RBP16.47■□□□□ 0.23
CNOT2-229ENST00000551179 HMGXB3Q12766 1538 aa16.44■□□□□ 0.22
CNOT2-229ENST00000551179 HOXD11P31277 338 aaPredicted RBP16.41■□□□□ 0.22
CNOT2-229ENST00000551179 LOC105371045A0A1W2PR82 267 aa16.38■□□□□ 0.21
CNOT2-229ENST00000551179 EEA1Q15075 1411 aa16.36■□□□□ 0.21
CNOT2-229ENST00000551179 FAM9AQ8IZU1 332 aaPredicted RBP16.36■□□□□ 0.21
CNOT2-229ENST00000551179 ABCC8Q09428 1581 aa16.35■□□□□ 0.21
CNOT2-229ENST00000551179 NCAPD3P42695 1498 aa16.35■□□□□ 0.21
CNOT2-229ENST00000551179 WRNQ14191 1432 aaPredicted RBP eCLIP16.3■□□□□ 0.2
CNOT2-229ENST00000551179 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
CNOT2-229ENST00000551179 SYNJ1O43426 1573 aa16.14■□□□□ 0.17
CNOT2-229ENST00000551179 EHMT2Q96KQ7 1210 aa16.11■□□□□ 0.17
CNOT2-229ENST00000551179 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
CNOT2-229ENST00000551179 TOP2BQ02880 1626 aa16.11■□□□□ 0.17
CNOT2-229ENST00000551179 GOLGA3Q08378 1498 aa16.1■□□□□ 0.17
CNOT2-229ENST00000551179 CC2D2AQ9P2K1 1620 aa16.1■□□□□ 0.17
CNOT2-229ENST00000551179 CACNB1Q02641 598 aaPredicted RBP16.1■□□□□ 0.17
CNOT2-229ENST00000551179 TRIM26Q12899 539 aaPredicted RBP16.1■□□□□ 0.17
CNOT2-229ENST00000551179 PRDM2Q13029 1718 aa16.1■□□□□ 0.17
CNOT2-229ENST00000551179 BIVM-ERCC5R4GMW8 1640 aa16.09■□□□□ 0.17
CNOT2-229ENST00000551179 CSRNP3Q8WYN3 585 aa16.09■□□□□ 0.17
CNOT2-229ENST00000551179 SOGA1O94964 1423 aa16.09■□□□□ 0.17
CNOT2-229ENST00000551179 CFTRP13569 1480 aa16.09■□□□□ 0.17
CNOT2-229ENST00000551179 CEP164Q9UPV0 1460 aa16.07■□□□□ 0.16
CNOT2-229ENST00000551179 TNIKQ9UKE5 1360 aa16.04■□□□□ 0.16
CNOT2-229ENST00000551179 KIF21BO75037 1637 aa16.04■□□□□ 0.16
CNOT2-229ENST00000551179 DNAJC5BQ9UF47 199 aa16■□□□□ 0.15
CNOT2-229ENST00000551179 UBTFP17480 764 aaKnown RBP15.99■□□□□ 0.15
CNOT2-229ENST00000551179 SLC4A1APQ9BWU0 796 aaKnown RBP15.99■□□□□ 0.15
CNOT2-229ENST00000551179 CEP162Q5TB80 1403 aa15.99■□□□□ 0.15
CNOT2-229ENST00000551179 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
CNOT2-229ENST00000551179 RUSC2Q8N2Y8 1516 aa15.94■□□□□ 0.14
CNOT2-229ENST00000551179 HRCP23327 699 aa15.94■□□□□ 0.14
CNOT2-229ENST00000551179 CUX1P39880 1505 aa15.93■□□□□ 0.14
CNOT2-229ENST00000551179 KIF27Q86VH2 1401 aa15.91■□□□□ 0.14
CNOT2-229ENST00000551179 ERICH3Q5RHP9 1530 aa15.89■□□□□ 0.13
CNOT2-229ENST00000551179 FANCD2Q9BXW9 1451 aa15.84■□□□□ 0.13
CNOT2-229ENST00000551179 LAMC3Q9Y6N6 1575 aa15.83■□□□□ 0.12
CNOT2-229ENST00000551179 CLIP1P30622 1438 aa15.82■□□□□ 0.12
CNOT2-229ENST00000551179 RAPGEF2Q9Y4G8 1499 aa15.79■□□□□ 0.12
CNOT2-229ENST00000551179 DNMBPQ6XZF7 1577 aa15.79■□□□□ 0.12
CNOT2-229ENST00000551179 ZEB1P37275 1124 aaPredicted RBP15.78■□□□□ 0.12
CNOT2-229ENST00000551179 FGD5Q6ZNL6 1462 aa15.77■□□□□ 0.11
CNOT2-229ENST00000551179 PRXQ9BXM0 1461 aa15.77■□□□□ 0.11
CNOT2-229ENST00000551179 CUX2O14529 1486 aa15.76■□□□□ 0.11
CNOT2-229ENST00000551179 APLP2Q06481 763 aa15.75■□□□□ 0.11
CNOT2-229ENST00000551179 VPS8Q8N3P4 1428 aa15.73■□□□□ 0.11
CNOT2-229ENST00000551179 PDS5BQ9NTI5 1447 aa15.73■□□□□ 0.11
CNOT2-229ENST00000551179 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.71■□□□□ 0.111e-7■□□□□ 8.2
CNOT2-229ENST00000551179 TOPBP1Q92547 1522 aa15.68■□□□□ 0.1
CNOT2-229ENST00000551179 NESP48681 1621 aa15.65■□□□□ 0.1
CNOT2-229ENST00000551179 ABCA10Q8WWZ4 1543 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms