RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 AEBP2Q6ZN18 517 aaPredicted RBP21.3■■□□□ 1
PTCH1-220ENST00000550136 CHIC1Q5VXU3 224 aa20.28■□□□□ 0.84
PTCH1-220ENST00000550136 NISCHQ9Y2I1 1504 aa18.58■□□□□ 0.57
PTCH1-220ENST00000550136 SENP3Q9H4L4 574 aaPredicted RBP18.31■□□□□ 0.52
PTCH1-220ENST00000550136 PHF23Q9BUL5 403 aaPredicted RBP18■□□□□ 0.47
PTCH1-220ENST00000550136 ABCC9O60706 1549 aa17.42■□□□□ 0.38
PTCH1-220ENST00000550136 PELP1Q8IZL8 1130 aaKnown RBP17■□□□□ 0.31
PTCH1-220ENST00000550136 FOXD1Q16676 465 aa16.98■□□□□ 0.31
PTCH1-220ENST00000550136 CCDC180Q9P1Z9 1646 aa16.97■□□□□ 0.31
PTCH1-220ENST00000550136 DNAJC5BQ9UF47 199 aa16.84■□□□□ 0.29
PTCH1-220ENST00000550136 MYT1Q01538 1121 aa16.75■□□□□ 0.27
PTCH1-220ENST00000550136 RB1CC1Q8TDY2 1594 aa16.41■□□□□ 0.22
PTCH1-220ENST00000550136 PLPPR3Q6T4P5 718 aa16.23■□□□□ 0.19
PTCH1-220ENST00000550136 NACADO15069 1562 aa16.17■□□□□ 0.18
PTCH1-220ENST00000550136 TTBK1Q5TCY1 1321 aaPredicted RBP16.15■□□□□ 0.18
PTCH1-220ENST00000550136 PABPN1Q86U42 306 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTCH1-220ENST00000550136 MSH5O43196 834 aa16.01■□□□□ 0.15
PTCH1-220ENST00000550136 UNC13AQ9UPW8 1703 aa15.99■□□□□ 0.15
PTCH1-220ENST00000550136 BICRAQ9NZM4 1560 aa15.94■□□□□ 0.14
PTCH1-220ENST00000550136 DNAJC5Q9H3Z4 198 aa15.93■□□□□ 0.14
PTCH1-220ENST00000550136 PIAS4Q8N2W9 510 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-220ENST00000550136 DCAF8L2P0C7V8 631 aa15.8■□□□□ 0.12
PTCH1-220ENST00000550136 MYO15BQ96JP2 1530 aa15.8■□□□□ 0.12
PTCH1-220ENST00000550136 PPP6R1Q9UPN7 881 aa15.79■□□□□ 0.12
PTCH1-220ENST00000550136 CECR2Q9BXF3 1484 aa15.79■□□□□ 0.12
PTCH1-220ENST00000550136 ADRA2BP18089 450 aa15.78■□□□□ 0.12
PTCH1-220ENST00000550136 SHROOM4Q9ULL8 1493 aa15.75■□□□□ 0.11
PTCH1-220ENST00000550136 CC2D2AQ9P2K1 1620 aa15.74■□□□□ 0.11
PTCH1-220ENST00000550136 HRCP23327 699 aa15.69■□□□□ 0.1
PTCH1-220ENST00000550136 PRKCSHP14314 528 aaPredicted RBP15.63■□□□□ 0.09
PTCH1-220ENST00000550136 POTEDQ86YR6 584 aa15.59■□□□□ 0.09
PTCH1-220ENST00000550136 EIF4G1Q04637 1599 aaKnown RBP15.58■□□□□ 0.08
PTCH1-220ENST00000550136 SCAF1Q9H7N4 1312 aaKnown RBP15.4■□□□□ 0.06
PTCH1-220ENST00000550136 ERICH6Q7L0X2 663 aa15.38■□□□□ 0.05
PTCH1-220ENST00000550136 DCAF1Q9Y4B6 1507 aa15.37■□□□□ 0.05
PTCH1-220ENST00000550136 APLP2Q06481 763 aa15.34■□□□□ 0.05
PTCH1-220ENST00000550136 SCRIBQ14160 1630 aa15.34■□□□□ 0.05
PTCH1-220ENST00000550136 CUX2O14529 1486 aa15.33■□□□□ 0.04
PTCH1-220ENST00000550136 ZCCHC6Q5VYS8 1495 aaKnown RBP15.28■□□□□ 0.04
PTCH1-220ENST00000550136 BCL11AQ9H165 835 aa15.28■□□□□ 0.04
PTCH1-220ENST00000550136 SLC24A1O60721 1099 aa15.15■□□□□ 0.02
PTCH1-220ENST00000550136 PPARGC1BQ86YN6 1023 aaKnown RBP15.1■□□□□ 0.01
PTCH1-220ENST00000550136 ERCC6Q03468 1493 aa15.1■□□□□ 0.01
PTCH1-220ENST00000550136 FAM9AQ8IZU1 332 aaPredicted RBP15.08■□□□□ 0
PTCH1-220ENST00000550136 NCAPD3P42695 1498 aa14.93□□□□□ -0.02
PTCH1-220ENST00000550136 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
PTCH1-220ENST00000550136 CENPBP07199 599 aaPredicted RBP14.88□□□□□ -0.03
PTCH1-220ENST00000550136 THOC2Q8NI27 1593 aaKnown RBP14.82□□□□□ -0.04
PTCH1-220ENST00000550136 NESP48681 1621 aa14.8□□□□□ -0.04
PTCH1-220ENST00000550136 ATAD2BQ9ULI0 1458 aa14.77□□□□□ -0.04
PTCH1-220ENST00000550136 HMGXB3Q12766 1538 aa14.77□□□□□ -0.05
PTCH1-220ENST00000550136 ACIN1Q9UKV3 1341 aaKnown RBP14.73□□□□□ -0.05
PTCH1-220ENST00000550136 SMARCA2P51531 1590 aa14.72□□□□□ -0.05
PTCH1-220ENST00000550136 LAMC3Q9Y6N6 1575 aa14.68□□□□□ -0.06
PTCH1-220ENST00000550136 PCGF6Q9BYE7 350 aa14.64□□□□□ -0.07
PTCH1-220ENST00000550136 SMARCA4P51532 1647 aa14.62□□□□□ -0.07
PTCH1-220ENST00000550136 KIF21AQ7Z4S6 1674 aa14.61□□□□□ -0.07
PTCH1-220ENST00000550136 DAXXQ9UER7 740 aaPredicted RBP14.61□□□□□ -0.07
PTCH1-220ENST00000550136 PDS5BQ9NTI5 1447 aa14.6□□□□□ -0.07
PTCH1-220ENST00000550136 BAZ1BQ9UIG0 1483 aaKnown RBP14.59□□□□□ -0.07
PTCH1-220ENST00000550136 GTF3C3Q9Y5Q9 886 aa14.58□□□□□ -0.08
PTCH1-220ENST00000550136 ANP32EQ9BTT0 268 aa14.55□□□□□ -0.08
PTCH1-220ENST00000550136 NEUROD1Q13562 356 aa14.54□□□□□ -0.08
PTCH1-220ENST00000550136 BAZ1AQ9NRL2 1556 aaPredicted RBP14.54□□□□□ -0.08
PTCH1-220ENST00000550136 PEG3Q9GZU2 1588 aa14.52□□□□□ -0.09
PTCH1-220ENST00000550136 MRC2Q9UBG0 1479 aa14.51□□□□□ -0.09
PTCH1-220ENST00000550136 WDR62O43379 1518 aa14.5□□□□□ -0.09
PTCH1-220ENST00000550136 ZEB1P37275 1124 aaPredicted RBP14.48□□□□□ -0.09
PTCH1-220ENST00000550136 OSCARQ8IYS5 282 aa14.48□□□□□ -0.09
PTCH1-220ENST00000550136 DMRT2Q9Y5R5 561 aa14.48□□□□□ -0.09
PTCH1-220ENST00000550136 MAPK8IP2Q13387 824 aaPredicted RBP14.47□□□□□ -0.09
PTCH1-220ENST00000550136 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
PTCH1-220ENST00000550136 EIF5BO60841 1220 aaKnown RBP14.39□□□□□ -0.11
PTCH1-220ENST00000550136 RIMBP3CA6NJZ7 1639 aa14.37□□□□□ -0.11
PTCH1-220ENST00000550136 RIMBP3BA6NNM3 1639 aa14.37□□□□□ -0.11
PTCH1-220ENST00000550136 RIMBP3Q9UFD9 1639 aa14.37□□□□□ -0.11
PTCH1-220ENST00000550136 CSRNP3Q8WYN3 585 aa14.34□□□□□ -0.11
PTCH1-220ENST00000550136 CEP164Q9UPV0 1460 aa14.32□□□□□ -0.12
PTCH1-220ENST00000550136 MROH2BQ7Z745 1585 aa14.28□□□□□ -0.12
PTCH1-220ENST00000550136 ARHGEF11O15085 1522 aa14.26□□□□□ -0.13
PTCH1-220ENST00000550136 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
PTCH1-220ENST00000550136 UBE2Q2Q8WVN8 375 aa14.23□□□□□ -0.13
PTCH1-220ENST00000550136 PPP4R3CPQ6ZMV5 832 aa14.19□□□□□ -0.14
PTCH1-220ENST00000550136 URB2Q14146 1524 aaKnown RBP14.17□□□□□ -0.14
PTCH1-220ENST00000550136 TRHP20396 242 aaPredicted RBP14.15□□□□□ -0.14
PTCH1-220ENST00000550136 CFTRP13569 1480 aa14.14□□□□□ -0.15
PTCH1-220ENST00000550136 CYB5RLQ6IPT4 315 aa14.14□□□□□ -0.15
PTCH1-220ENST00000550136 ANO8Q9HCE9 1232 aaPredicted RBP14.12□□□□□ -0.15
PTCH1-220ENST00000550136 ARAP1Q96P48 1450 aa14.08□□□□□ -0.16
PTCH1-220ENST00000550136 IFT140Q96RY7 1462 aa14.08□□□□□ -0.16
PTCH1-220ENST00000550136 WIZO95785 1651 aa14.07□□□□□ -0.16
PTCH1-220ENST00000550136 ZNF608Q9ULD9 1512 aaPredicted RBP14.06□□□□□ -0.16
PTCH1-220ENST00000550136 TRIM26Q12899 539 aaPredicted RBP14.03□□□□□ -0.16
PTCH1-220ENST00000550136 RSF1Q96T23 1441 aaPredicted RBP14.03□□□□□ -0.16
PTCH1-220ENST00000550136 PLEKHG5O94827 1062 aa14.01□□□□□ -0.17
PTCH1-220ENST00000550136 EIF4G3O43432 1585 aaKnown RBP13.98□□□□□ -0.17
PTCH1-220ENST00000550136 CHD1O14646 1710 aa13.98□□□□□ -0.17
PTCH1-220ENST00000550136 CNKSR2Q8WXI2 1034 aa13.97□□□□□ -0.17
PTCH1-220ENST00000550136 PRDM2Q13029 1718 aa13.97□□□□□ -0.17
PTCH1-220ENST00000550136 HOXD11P31277 338 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 154.2 ms