RNA–Protein interactions for RNA: ENST00000549499.1

FGD6-205, Transcript of FYVE, RhoGEF and PH domain containing 6, humanhuman

TSL 1 (best) BASIC

Gene FGD6, Length 3,757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FGD6-205ENST00000549499 NISCHQ9Y2I1 1504 aa16.3■□□□□ 0.2
FGD6-205ENST00000549499 DCAF8L2P0C7V8 631 aa15.49■□□□□ 0.07
FGD6-205ENST00000549499 ABCC9O60706 1549 aa15.35■□□□□ 0.05
FGD6-205ENST00000549499 PABPN1Q86U42 306 aaKnown RBP eCLIP14.76□□□□□ -0.05
FGD6-205ENST00000549499 DNAJC5BQ9UF47 199 aa14.61□□□□□ -0.07
FGD6-205ENST00000549499 SHROOM4Q9ULL8 1493 aa14.11□□□□□ -0.15
FGD6-205ENST00000549499 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
FGD6-205ENST00000549499 RB1CC1Q8TDY2 1594 aa13.77□□□□□ -0.2
FGD6-205ENST00000549499 SCRIBQ14160 1630 aa13.73□□□□□ -0.21
FGD6-205ENST00000549499 CECR2Q9BXF3 1484 aa13.53□□□□□ -0.24
FGD6-205ENST00000549499 NACADO15069 1562 aa13.51□□□□□ -0.25
FGD6-205ENST00000549499 BICRAQ9NZM4 1560 aa13.41□□□□□ -0.26
FGD6-205ENST00000549499 UNC13AQ9UPW8 1703 aa13.37□□□□□ -0.27
FGD6-205ENST00000549499 ZCCHC6Q5VYS8 1495 aaKnown RBP13.36□□□□□ -0.27
FGD6-205ENST00000549499 TRIM41Q8WV44 630 aa13.35□□□□□ -0.27
FGD6-205ENST00000549499 CC2D2AQ9P2K1 1620 aa13.33□□□□□ -0.27
FGD6-205ENST00000549499 SUPT5HO00267 1087 aaKnown RBP13.22□□□□□ -0.29
FGD6-205ENST00000549499 EIF4G1Q04637 1599 aaKnown RBP13.22□□□□□ -0.29
FGD6-205ENST00000549499 ERCC6Q03468 1493 aa13.17□□□□□ -0.3
FGD6-205ENST00000549499 NESP48681 1621 aa13.13□□□□□ -0.31
FGD6-205ENST00000549499 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
FGD6-205ENST00000549499 FBLN2P98095 1184 aa13.06□□□□□ -0.32
FGD6-205ENST00000549499 TTBK1Q5TCY1 1321 aaPredicted RBP12.94□□□□□ -0.34
FGD6-205ENST00000549499 SMARCA2P51531 1590 aa12.9□□□□□ -0.34
FGD6-205ENST00000549499 EHMT2Q96KQ7 1210 aa12.89□□□□□ -0.35
FGD6-205ENST00000549499 MYO15BQ96JP2 1530 aa12.86□□□□□ -0.35
FGD6-205ENST00000549499 BAZ1BQ9UIG0 1483 aaKnown RBP12.84□□□□□ -0.35
FGD6-205ENST00000549499 ATAD2BQ9ULI0 1458 aa12.84□□□□□ -0.35
FGD6-205ENST00000549499 MROH2BQ7Z745 1585 aa12.84□□□□□ -0.35
FGD6-205ENST00000549499 TRHP20396 242 aaPredicted RBP12.83□□□□□ -0.36
FGD6-205ENST00000549499 DCAF1Q9Y4B6 1507 aa12.82□□□□□ -0.36
FGD6-205ENST00000549499 CYB5RLQ6IPT4 315 aa12.79□□□□□ -0.36
FGD6-205ENST00000549499 WIZO95785 1651 aa12.67□□□□□ -0.38
FGD6-205ENST00000549499 RANGAP1P46060 587 aaPredicted RBP12.67□□□□□ -0.38
FGD6-205ENST00000549499 NCAPD3P42695 1498 aa12.66□□□□□ -0.38
FGD6-205ENST00000549499 SMARCA4P51532 1647 aa12.64□□□□□ -0.39
FGD6-205ENST00000549499 OSCARQ8IYS5 282 aa12.62□□□□□ -0.39
FGD6-205ENST00000549499 CADPSQ9ULU8 1353 aa12.6□□□□□ -0.39
FGD6-205ENST00000549499 RSF1Q96T23 1441 aaPredicted RBP12.57□□□□□ -0.4
FGD6-205ENST00000549499 BAZ1AQ9NRL2 1556 aaPredicted RBP12.56□□□□□ -0.4
FGD6-205ENST00000549499 PDS5BQ9NTI5 1447 aa12.56□□□□□ -0.4
FGD6-205ENST00000549499 TDRD9Q8NDG6 1382 aaKnown RBP12.55□□□□□ -0.4
FGD6-205ENST00000549499 CHMP7Q8WUX9 453 aaPredicted RBP12.49□□□□□ -0.41
FGD6-205ENST00000549499 FANCD2Q9BXW9 1451 aa12.49□□□□□ -0.41
FGD6-205ENST00000549499 ARID3CA6NKF2 412 aa12.49□□□□□ -0.41
FGD6-205ENST00000549499 FAM9AQ8IZU1 332 aaPredicted RBP12.48□□□□□ -0.41
FGD6-205ENST00000549499 AQRO60306 1485 aaKnown RBP eCLIP12.47□□□□□ -0.41
FGD6-205ENST00000549499 ZNF608Q9ULD9 1512 aaPredicted RBP12.45□□□□□ -0.42
FGD6-205ENST00000549499 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
FGD6-205ENST00000549499 CEP164Q9UPV0 1460 aa12.43□□□□□ -0.42
FGD6-205ENST00000549499 CCDC88BA6NC98 1476 aa12.4□□□□□ -0.42
FGD6-205ENST00000549499 CUX2O14529 1486 aa12.39□□□□□ -0.43
FGD6-205ENST00000549499 RAD54L2Q9Y4B4 1467 aa12.39□□□□□ -0.43
FGD6-205ENST00000549499 PLPPR3Q6T4P5 718 aa12.37□□□□□ -0.43
FGD6-205ENST00000549499 MRC2Q9UBG0 1479 aa12.35□□□□□ -0.43
FGD6-205ENST00000549499 AEBP2Q6ZN18 517 aaPredicted RBP12.34□□□□□ -0.43
FGD6-205ENST00000549499 HMGXB3Q12766 1538 aa12.32□□□□□ -0.44
FGD6-205ENST00000549499 URB2Q14146 1524 aaKnown RBP12.32□□□□□ -0.44
FGD6-205ENST00000549499 P3H3Q8IVL6 736 aa12.27□□□□□ -0.45
FGD6-205ENST00000549499 LAMC3Q9Y6N6 1575 aa12.25□□□□□ -0.45
FGD6-205ENST00000549499 THOC2Q8NI27 1593 aaKnown RBP12.24□□□□□ -0.45
FGD6-205ENST00000549499 SOGA1O94964 1423 aa12.24□□□□□ -0.45
FGD6-205ENST00000549499 CFTRP13569 1480 aa12.22□□□□□ -0.45
FGD6-205ENST00000549499 ATP1B4Q9UN42 357 aaPredicted RBP12.21□□□□□ -0.45
FGD6-205ENST00000549499 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.16□□□□□ -0.46
FGD6-205ENST00000549499 HNRNPUL2Q1KMD3 747 aaKnown RBP12.16□□□□□ -0.46
FGD6-205ENST00000549499 TOPBP1Q92547 1522 aa12.15□□□□□ -0.46
FGD6-205ENST00000549499 TOP2AP11388 1531 aaKnown RBP12.14□□□□□ -0.47
FGD6-205ENST00000549499 ABCC8Q09428 1581 aa12.13□□□□□ -0.47
FGD6-205ENST00000549499 KCNH8Q96L42 1107 aa12.13□□□□□ -0.47
FGD6-205ENST00000549499 POLA1P09884 1462 aaPredicted RBP12.1□□□□□ -0.47
FGD6-205ENST00000549499 FGD5Q6ZNL6 1462 aa12.09□□□□□ -0.47
FGD6-205ENST00000549499 FAM69CQ0P6D2 419 aa12.08□□□□□ -0.47
FGD6-205ENST00000549499 SNAPC4Q5SXM2 1469 aa12.07□□□□□ -0.48
FGD6-205ENST00000549499 PEG3Q9GZU2 1588 aa12.07□□□□□ -0.48
FGD6-205ENST00000549499 WDR62O43379 1518 aa12.07□□□□□ -0.48
FGD6-205ENST00000549499 NPM1P06748 294 aaKnown RBP eCLIP12.06□□□□□ -0.48
FGD6-205ENST00000549499 ARHGEF11O15085 1522 aa12.05□□□□□ -0.48
FGD6-205ENST00000549499 JPH4Q96JJ6 628 aa12.04□□□□□ -0.48
FGD6-205ENST00000549499 IFT140Q96RY7 1462 aa12□□□□□ -0.49
FGD6-205ENST00000549499 RIMBP3CA6NJZ7 1639 aa11.98□□□□□ -0.49
FGD6-205ENST00000549499 RIMBP3BA6NNM3 1639 aa11.98□□□□□ -0.49
FGD6-205ENST00000549499 RIMBP3Q9UFD9 1639 aa11.98□□□□□ -0.49
FGD6-205ENST00000549499 CUX1P39880 1505 aa11.96□□□□□ -0.49
FGD6-205ENST00000549499 EIF4G3O43432 1585 aaKnown RBP11.96□□□□□ -0.5
FGD6-205ENST00000549499 GAPVD1Q14C86 1478 aa11.96□□□□□ -0.5
FGD6-205ENST00000549499 ARAP1Q96P48 1450 aa11.96□□□□□ -0.5
FGD6-205ENST00000549499 CHIC1Q5VXU3 224 aa11.95□□□□□ -0.5
FGD6-205ENST00000549499 WRNQ14191 1432 aaPredicted RBP eCLIP11.94□□□□□ -0.5
FGD6-205ENST00000549499 MYT1LQ9UL68 1186 aa11.94□□□□□ -0.5
FGD6-205ENST00000549499 ERCC6L2Q5T890 1561 aa11.92□□□□□ -0.5
FGD6-205ENST00000549499 SENP3Q9H4L4 574 aaPredicted RBP11.91□□□□□ -0.5
FGD6-205ENST00000549499 UBTFP17480 764 aaKnown RBP11.9□□□□□ -0.51
FGD6-205ENST00000549499 MLECQ14165 292 aa11.89□□□□□ -0.51
FGD6-205ENST00000549499 CHD1O14646 1710 aa11.87□□□□□ -0.51
FGD6-205ENST00000549499 PRG4Q92954 1404 aaPredicted RBP11.87□□□□□ -0.51
FGD6-205ENST00000549499 DNMBPQ6XZF7 1577 aa11.86□□□□□ -0.51
FGD6-205ENST00000549499 SRCAPQ6ZRS2 3230 aa11.86□□□□□ -0.51
FGD6-205ENST00000549499 RUSC2Q8N2Y8 1516 aa11.85□□□□□ -0.51
FGD6-205ENST00000549499 GRIN2BQ13224 1484 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms