RNA–Protein interactions for RNA: ENST00000548570.1

APP-217, Transcript of amyloid beta precursor protein, humanhuman

TSL 2

Gene APP, Length 361 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-217ENST00000548570 AEBP2Q6ZN18 517 aaPredicted RBP15.39■□□□□ 0.05
APP-217ENST00000548570 CHIC1Q5VXU3 224 aa14.59□□□□□ -0.07
APP-217ENST00000548570 SENP3Q9H4L4 574 aaPredicted RBP13.35□□□□□ -0.27
APP-217ENST00000548570 PHF23Q9BUL5 403 aaPredicted RBP13.07□□□□□ -0.32
APP-217ENST00000548570 FOXD1Q16676 465 aa12.34□□□□□ -0.43
APP-217ENST00000548570 NISCHQ9Y2I1 1504 aa11.97□□□□□ -0.49
APP-217ENST00000548570 MSH5O43196 834 aa11.79□□□□□ -0.52
APP-217ENST00000548570 POTEDQ86YR6 584 aa11.76□□□□□ -0.53
APP-217ENST00000548570 PLPPR3Q6T4P5 718 aa11.57□□□□□ -0.56
APP-217ENST00000548570 PIAS4Q8N2W9 510 aaPredicted RBP11.57□□□□□ -0.56
APP-217ENST00000548570 ADRA2BP18089 450 aa11.31□□□□□ -0.6
APP-217ENST00000548570 PPP6R1Q9UPN7 881 aa11.31□□□□□ -0.6
APP-217ENST00000548570 SCAF1Q9H7N4 1312 aaKnown RBP10.57□□□□□ -0.72
APP-217ENST00000548570 DMRT2Q9Y5R5 561 aa10.5□□□□□ -0.73
APP-217ENST00000548570 CCDC180Q9P1Z9 1646 aa10.45□□□□□ -0.74
APP-217ENST00000548570 MAPK8IP2Q13387 824 aaPredicted RBP10.42□□□□□ -0.74
APP-217ENST00000548570 CACNB1Q02641 598 aaPredicted RBP10.23□□□□□ -0.77
APP-217ENST00000548570 ABCC9O60706 1549 aa10.19□□□□□ -0.78
APP-217ENST00000548570 DCAF8L1A6NGE4 600 aa10.16□□□□□ -0.78
APP-217ENST00000548570 PPP4R3CPQ6ZMV5 832 aa10.05□□□□□ -0.8
APP-217ENST00000548570 ZCCHC6Q5VYS8 1495 aaKnown RBP10.02□□□□□ -0.81
APP-217ENST00000548570 HOXD11P31277 338 aaPredicted RBP10.01□□□□□ -0.81
APP-217ENST00000548570 CNKSR2Q8WXI2 1034 aa9.96□□□□□ -0.82
APP-217ENST00000548570 RNF39Q9H2S5 420 aa9.95□□□□□ -0.82
APP-217ENST00000548570 RNF216Q9NWF9 866 aaPredicted RBP9.92□□□□□ -0.82
APP-217ENST00000548570 DCAF8L2P0C7V8 631 aa9.91□□□□□ -0.82
APP-217ENST00000548570 DCAF1Q9Y4B6 1507 aa9.89□□□□□ -0.83
APP-217ENST00000548570 C1QBPQ07021 282 aaKnown RBP9.88□□□□□ -0.83
APP-217ENST00000548570 MYO15BQ96JP2 1530 aa9.87□□□□□ -0.83
APP-217ENST00000548570 NACADO15069 1562 aa9.84□□□□□ -0.83
APP-217ENST00000548570 DNAJC5BQ9UF47 199 aa9.79□□□□□ -0.84
APP-217ENST00000548570 RB1CC1Q8TDY2 1594 aa9.79□□□□□ -0.84
APP-217ENST00000548570 NCBP3Q53F19 620 aaKnown RBP9.73□□□□□ -0.85
APP-217ENST00000548570 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.63□□□□□ -0.877e-8■■□□□ 12.8
APP-217ENST00000548570 SCRIBQ14160 1630 aa9.62□□□□□ -0.87
APP-217ENST00000548570 PABPN1Q86U42 306 aaKnown RBP eCLIP9.6□□□□□ -0.87
APP-217ENST00000548570 SHROOM4Q9ULL8 1493 aa9.59□□□□□ -0.87
APP-217ENST00000548570 BICRAQ9NZM4 1560 aa9.58□□□□□ -0.88
APP-217ENST00000548570 UNC13AQ9UPW8 1703 aa9.51□□□□□ -0.89
APP-217ENST00000548570 NPM3O75607 178 aaKnown RBP9.43□□□□□ -0.9
APP-217ENST00000548570 CECR2Q9BXF3 1484 aa9.37□□□□□ -0.91
APP-217ENST00000548570 CAPN15O75808 1086 aa9.31□□□□□ -0.92
APP-217ENST00000548570 U3KPZ7 1027 aaPredicted RBP9.28□□□□□ -0.92
APP-217ENST00000548570 EIF4G1Q04637 1599 aaKnown RBP9.28□□□□□ -0.92
APP-217ENST00000548570 MROH2BQ7Z745 1585 aa9.26□□□□□ -0.93
APP-217ENST00000548570 APLP2Q06481 763 aa9.25□□□□□ -0.93
APP-217ENST00000548570 RSF1Q96T23 1441 aaPredicted RBP9.23□□□□□ -0.93
APP-217ENST00000548570 DSG3P32926 999 aa9.23□□□□□ -0.93
APP-217ENST00000548570 POTEHQ6S545 545 aa9.22□□□□□ -0.93
APP-217ENST00000548570 BAZ1AQ9NRL2 1556 aaPredicted RBP9.21□□□□□ -0.93
APP-217ENST00000548570 SMARCA4P51532 1647 aa9.21□□□□□ -0.93
APP-217ENST00000548570 SPINK5Q9NQ38 1064 aaPredicted RBP9.2□□□□□ -0.94
APP-217ENST00000548570 ATAD2BQ9ULI0 1458 aa9.19□□□□□ -0.94
APP-217ENST00000548570 CC2D2AQ9P2K1 1620 aa9.18□□□□□ -0.94
APP-217ENST00000548570 NCAPD3P42695 1498 aa9.15□□□□□ -0.94
APP-217ENST00000548570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.15□□□□□ -0.94
APP-217ENST00000548570 HNRNPUL2Q1KMD3 747 aaKnown RBP9.15□□□□□ -0.94
APP-217ENST00000548570 PEG3Q9GZU2 1588 aa9.14□□□□□ -0.95
APP-217ENST00000548570 ZNF219Q9P2Y4 722 aaPredicted RBP9.13□□□□□ -0.95
APP-217ENST00000548570 WIZO95785 1651 aa9.1□□□□□ -0.95
APP-217ENST00000548570 SMARCA2P51531 1590 aa9.09□□□□□ -0.95
APP-217ENST00000548570 TRHP20396 242 aaPredicted RBP9.09□□□□□ -0.95
APP-217ENST00000548570 SUPT5HO00267 1087 aaKnown RBP9.08□□□□□ -0.96
APP-217ENST00000548570 HMGXB3Q12766 1538 aa9.06□□□□□ -0.96
APP-217ENST00000548570 BAZ1BQ9UIG0 1483 aaKnown RBP9.06□□□□□ -0.96
APP-217ENST00000548570 SAMD1Q6SPF0 538 aaPredicted RBP9.03□□□□□ -0.96
APP-217ENST00000548570 TOP2AP11388 1531 aaKnown RBP9.02□□□□□ -0.97
APP-217ENST00000548570 KCNA4P22459 653 aa9.02□□□□□ -0.97
APP-217ENST00000548570 SLC4A2P04920 1241 aa9.01□□□□□ -0.97
APP-217ENST00000548570 ABCB7O75027 752 aa9□□□□□ -0.97
APP-217ENST00000548570 CCDC88BA6NC98 1476 aa8.97□□□□□ -0.97
APP-217ENST00000548570 RBM42Q9BTD8 480 aaKnown RBP8.96□□□□□ -0.98
APP-217ENST00000548570 CADPSQ9ULU8 1353 aa8.89□□□□□ -0.99
APP-217ENST00000548570 NESP48681 1621 aa8.89□□□□□ -0.99
APP-217ENST00000548570 CFTRP13569 1480 aa8.87□□□□□ -0.99
APP-217ENST00000548570 MYCNP04198 464 aaPredicted RBP8.81□□□□□ -1
APP-217ENST00000548570 LAMC3Q9Y6N6 1575 aa8.8□□□□□ -1
APP-217ENST00000548570 POLA2Q14181 598 aa8.78□□□□□ -1
APP-217ENST00000548570 CHRDL2Q6WN34 429 aa8.76□□□□□ -1.01
APP-217ENST00000548570 PDS5BQ9NTI5 1447 aa8.76□□□□□ -1.01
APP-217ENST00000548570 FANCD2Q9BXW9 1451 aa8.76□□□□□ -1.01
APP-217ENST00000548570 ZBTB12Q9Y330 459 aaPredicted RBP8.71□□□□□ -1.02
APP-217ENST00000548570 ERCC6Q03468 1493 aa8.7□□□□□ -1.02
APP-217ENST00000548570 CEP164Q9UPV0 1460 aa8.7□□□□□ -1.02
APP-217ENST00000548570 URB2Q14146 1524 aaKnown RBP8.7□□□□□ -1.02
APP-217ENST00000548570 MRC2Q9UBG0 1479 aa8.68□□□□□ -1.02
APP-217ENST00000548570 ABCC8Q09428 1581 aa8.67□□□□□ -1.02
APP-217ENST00000548570 KIF21AQ7Z4S6 1674 aa8.67□□□□□ -1.02
APP-217ENST00000548570 THOC2Q8NI27 1593 aaKnown RBP8.66□□□□□ -1.02
APP-217ENST00000548570 CUX1P39880 1505 aa8.66□□□□□ -1.02
APP-217ENST00000548570 WDR62O43379 1518 aa8.64□□□□□ -1.03
APP-217ENST00000548570 TOPBP1Q92547 1522 aa8.64□□□□□ -1.03
APP-217ENST00000548570 WRNQ14191 1432 aaPredicted RBP eCLIP8.64□□□□□ -1.03
APP-217ENST00000548570 AKT1S1Q96B36 256 aa8.64□□□□□ -1.03
APP-217ENST00000548570 SYNJ1O43426 1573 aa8.62□□□□□ -1.03
APP-217ENST00000548570 CUX2O14529 1486 aa8.62□□□□□ -1.03
APP-217ENST00000548570 DNMBPQ6XZF7 1577 aa8.61□□□□□ -1.03
APP-217ENST00000548570 PRDM2Q13029 1718 aa8.6□□□□□ -1.03
APP-217ENST00000548570 POLA1P09884 1462 aaPredicted RBP8.59□□□□□ -1.03
APP-217ENST00000548570 FGD5Q6ZNL6 1462 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms