RNA–Protein interactions for RNA: ENST00000547861.5

CCDC65-203, Transcript of coiled-coil domain containing 65, humanhuman

TSL 2

Gene CCDC65, Length 1,746 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65-203ENST00000547861 AEBP2Q6ZN18 517 aaPredicted RBP21.97■■□□□ 1.11
CCDC65-203ENST00000547861 CHIC1Q5VXU3 224 aa20.66■□□□□ 0.9
CCDC65-203ENST00000547861 SENP3Q9H4L4 574 aaPredicted RBP18.8■□□□□ 0.6
CCDC65-203ENST00000547861 PHF23Q9BUL5 403 aaPredicted RBP18.49■□□□□ 0.55
CCDC65-203ENST00000547861 NISCHQ9Y2I1 1504 aa18.16■□□□□ 0.5
CCDC65-203ENST00000547861 FOXD1Q16676 465 aa17.52■□□□□ 0.4
CCDC65-203ENST00000547861 MSH5O43196 834 aa16.51■□□□□ 0.23
CCDC65-203ENST00000547861 POTEDQ86YR6 584 aa16.49■□□□□ 0.23
CCDC65-203ENST00000547861 PLPPR3Q6T4P5 718 aa16.39■□□□□ 0.21
CCDC65-203ENST00000547861 ABCC9O60706 1549 aa16.36■□□□□ 0.21
CCDC65-203ENST00000547861 PIAS4Q8N2W9 510 aaPredicted RBP16.31■□□□□ 0.2
CCDC65-203ENST00000547861 CCDC180Q9P1Z9 1646 aa16.29■□□□□ 0.2
CCDC65-203ENST00000547861 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
CCDC65-203ENST00000547861 ADRA2BP18089 450 aa16.12■□□□□ 0.17
CCDC65-203ENST00000547861 RB1CC1Q8TDY2 1594 aa15.53■□□□□ 0.08
CCDC65-203ENST00000547861 NACADO15069 1562 aa15.41■□□□□ 0.06
CCDC65-203ENST00000547861 DCAF8L2P0C7V8 631 aa15.4■□□□□ 0.06
CCDC65-203ENST00000547861 DNAJC5BQ9UF47 199 aa15.38■□□□□ 0.05
CCDC65-203ENST00000547861 PABPN1Q86U42 306 aaKnown RBP eCLIP15.25■□□□□ 0.03
CCDC65-203ENST00000547861 ZCCHC6Q5VYS8 1495 aaKnown RBP15.22■□□□□ 0.03
CCDC65-203ENST00000547861 UNC13AQ9UPW8 1703 aa15.19■□□□□ 0.02
CCDC65-203ENST00000547861 MYO15BQ96JP2 1530 aa15.17■□□□□ 0.02
CCDC65-203ENST00000547861 BICRAQ9NZM4 1560 aa15.09■□□□□ 0.01
CCDC65-203ENST00000547861 DCAF1Q9Y4B6 1507 aa14.98□□□□□ -0.01
CCDC65-203ENST00000547861 SCRIBQ14160 1630 aa14.88□□□□□ -0.03
CCDC65-203ENST00000547861 MAPK8IP2Q13387 824 aaPredicted RBP14.87□□□□□ -0.03
CCDC65-203ENST00000547861 DMRT2Q9Y5R5 561 aa14.87□□□□□ -0.03
CCDC65-203ENST00000547861 SHROOM4Q9ULL8 1493 aa14.84□□□□□ -0.03
CCDC65-203ENST00000547861 SCAF1Q9H7N4 1312 aaKnown RBP14.79□□□□□ -0.04
CCDC65-203ENST00000547861 CC2D2AQ9P2K1 1620 aa14.76□□□□□ -0.05
CCDC65-203ENST00000547861 CECR2Q9BXF3 1484 aa14.73□□□□□ -0.05
CCDC65-203ENST00000547861 EIF4G1Q04637 1599 aaKnown RBP14.72□□□□□ -0.05
CCDC65-203ENST00000547861 PPP4R3CPQ6ZMV5 832 aa14.33□□□□□ -0.12
CCDC65-203ENST00000547861 CACNB1Q02641 598 aaPredicted RBP14.28□□□□□ -0.12
CCDC65-203ENST00000547861 SUPT5HO00267 1087 aaKnown RBP14.26□□□□□ -0.13
CCDC65-203ENST00000547861 HOXD11P31277 338 aaPredicted RBP14.24□□□□□ -0.13
CCDC65-203ENST00000547861 NCAPD3P42695 1498 aa14.23□□□□□ -0.13
CCDC65-203ENST00000547861 DCAF8L1A6NGE4 600 aa14.21□□□□□ -0.14
CCDC65-203ENST00000547861 ATAD2BQ9ULI0 1458 aa14.2□□□□□ -0.14
CCDC65-203ENST00000547861 SMARCA4P51532 1647 aa14.17□□□□□ -0.14
CCDC65-203ENST00000547861 SMARCA2P51531 1590 aa14.14□□□□□ -0.15
CCDC65-203ENST00000547861 DNAJC5Q9H3Z4 198 aa14.13□□□□□ -0.15
CCDC65-203ENST00000547861 CNKSR2Q8WXI2 1034 aa14.12□□□□□ -0.15
CCDC65-203ENST00000547861 ERCC6Q03468 1493 aa14.12□□□□□ -0.15
CCDC65-203ENST00000547861 HMGXB3Q12766 1538 aa14.11□□□□□ -0.15
CCDC65-203ENST00000547861 BAZ1AQ9NRL2 1556 aaPredicted RBP14.09□□□□□ -0.15
CCDC65-203ENST00000547861 CUX2O14529 1486 aa14.08□□□□□ -0.16
CCDC65-203ENST00000547861 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
CCDC65-203ENST00000547861 RNF216Q9NWF9 866 aaPredicted RBP14.07□□□□□ -0.16
CCDC65-203ENST00000547861 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
CCDC65-203ENST00000547861 NESP48681 1621 aa14.05□□□□□ -0.16
CCDC65-203ENST00000547861 PEG3Q9GZU2 1588 aa14.02□□□□□ -0.17
CCDC65-203ENST00000547861 RSF1Q96T23 1441 aaPredicted RBP14.01□□□□□ -0.17
CCDC65-203ENST00000547861 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
CCDC65-203ENST00000547861 WIZO95785 1651 aa13.93□□□□□ -0.18
CCDC65-203ENST00000547861 LAMC3Q9Y6N6 1575 aa13.91□□□□□ -0.18
CCDC65-203ENST00000547861 THOC2Q8NI27 1593 aaKnown RBP13.88□□□□□ -0.19
CCDC65-203ENST00000547861 KIF21AQ7Z4S6 1674 aa13.86□□□□□ -0.19
CCDC65-203ENST00000547861 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
CCDC65-203ENST00000547861 PDS5BQ9NTI5 1447 aa13.84□□□□□ -0.19
CCDC65-203ENST00000547861 CADPSQ9ULU8 1353 aa13.81□□□□□ -0.2
CCDC65-203ENST00000547861 TOP2AP11388 1531 aaKnown RBP13.74□□□□□ -0.21
CCDC65-203ENST00000547861 MRC2Q9UBG0 1479 aa13.73□□□□□ -0.21
CCDC65-203ENST00000547861 NCBP3Q53F19 620 aaKnown RBP13.72□□□□□ -0.21
CCDC65-203ENST00000547861 WDR62O43379 1518 aa13.68□□□□□ -0.22
CCDC65-203ENST00000547861 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
CCDC65-203ENST00000547861 FANCD2Q9BXW9 1451 aa13.66□□□□□ -0.22
CCDC65-203ENST00000547861 CFTRP13569 1480 aa13.64□□□□□ -0.23
CCDC65-203ENST00000547861 URB2Q14146 1524 aaKnown RBP13.55□□□□□ -0.24
CCDC65-203ENST00000547861 CCDC88BA6NC98 1476 aa13.54□□□□□ -0.24
CCDC65-203ENST00000547861 TRIM41Q8WV44 630 aa13.53□□□□□ -0.24
CCDC65-203ENST00000547861 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.53□□□□□ -0.24
CCDC65-203ENST00000547861 NPM3O75607 178 aaKnown RBP13.5□□□□□ -0.25
CCDC65-203ENST00000547861 PRDM2Q13029 1718 aa13.5□□□□□ -0.25
CCDC65-203ENST00000547861 OSCARQ8IYS5 282 aa13.47□□□□□ -0.25
CCDC65-203ENST00000547861 IFT140Q96RY7 1462 aa13.4□□□□□ -0.26
CCDC65-203ENST00000547861 ABCC8Q09428 1581 aa13.4□□□□□ -0.26
CCDC65-203ENST00000547861 TOPBP1Q92547 1522 aa13.39□□□□□ -0.27
CCDC65-203ENST00000547861 ZNF608Q9ULD9 1512 aaPredicted RBP13.39□□□□□ -0.27
CCDC65-203ENST00000547861 DNMBPQ6XZF7 1577 aa13.34□□□□□ -0.27
CCDC65-203ENST00000547861 EIF4G3O43432 1585 aaKnown RBP13.3□□□□□ -0.28
CCDC65-203ENST00000547861 RIMBP3CA6NJZ7 1639 aa13.28□□□□□ -0.28
CCDC65-203ENST00000547861 RIMBP3BA6NNM3 1639 aa13.28□□□□□ -0.28
CCDC65-203ENST00000547861 RIMBP3Q9UFD9 1639 aa13.28□□□□□ -0.28
CCDC65-203ENST00000547861 AQRO60306 1485 aaKnown RBP eCLIP13.28□□□□□ -0.28
CCDC65-203ENST00000547861 TARBP1Q13395 1621 aaKnown RBP13.27□□□□□ -0.28
CCDC65-203ENST00000547861 POLA1P09884 1462 aaPredicted RBP13.26□□□□□ -0.29
CCDC65-203ENST00000547861 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
CCDC65-203ENST00000547861 U3KPZ7 1027 aaPredicted RBP13.24□□□□□ -0.29
CCDC65-203ENST00000547861 ARHGEF11O15085 1522 aa13.23□□□□□ -0.29
CCDC65-203ENST00000547861 RAD54L2Q9Y4B4 1467 aa13.23□□□□□ -0.29
CCDC65-203ENST00000547861 LOC105371045A0A1W2PR82 267 aa13.22□□□□□ -0.29
CCDC65-203ENST00000547861 CHD1O14646 1710 aa13.22□□□□□ -0.29
CCDC65-203ENST00000547861 FBLN2P98095 1184 aa13.22□□□□□ -0.29
CCDC65-203ENST00000547861 SOGA1O94964 1423 aa13.21□□□□□ -0.3
CCDC65-203ENST00000547861 WRNQ14191 1432 aaPredicted RBP eCLIP13.19□□□□□ -0.3
CCDC65-203ENST00000547861 TDRD9Q8NDG6 1382 aaKnown RBP13.19□□□□□ -0.3
CCDC65-203ENST00000547861 BIVM-ERCC5R4GMW8 1640 aa13.19□□□□□ -0.3
CCDC65-203ENST00000547861 FGD5Q6ZNL6 1462 aa13.17□□□□□ -0.3
CCDC65-203ENST00000547861 CYB5RLQ6IPT4 315 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms