RNA–Protein interactions for RNA: ENST00000547018.5

SCAF11-209, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 5

Gene SCAF11, Length 3,271 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-209ENST00000547018 NISCHQ9Y2I1 1504 aa26.51■■□□□ 1.84
SCAF11-209ENST00000547018 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
SCAF11-209ENST00000547018 SHROOM4Q9ULL8 1493 aa23.26■■□□□ 1.31
SCAF11-209ENST00000547018 SUPT5HO00267 1087 aaKnown RBP22.71■■□□□ 1.23
SCAF11-209ENST00000547018 CCDC180Q9P1Z9 1646 aa22.31■■□□□ 1.16
SCAF11-209ENST00000547018 ZCCHC6Q5VYS8 1495 aaKnown RBP22.24■■□□□ 1.15
SCAF11-209ENST00000547018 ABCC9O60706 1549 aa21.87■■□□□ 1.09
SCAF11-209ENST00000547018 SCRIBQ14160 1630 aa21.49■■□□□ 1.03
SCAF11-209ENST00000547018 CHIC1Q5VXU3 224 aa21.46■■□□□ 1.03
SCAF11-209ENST00000547018 DCAF1Q9Y4B6 1507 aa21.35■■□□□ 1.01
SCAF11-209ENST00000547018 EHMT2Q96KQ7 1210 aa21.31■■□□□ 1
SCAF11-209ENST00000547018 LOC105371045A0A1W2PR82 267 aa21.15■□□□□ 0.98
SCAF11-209ENST00000547018 FAM9AQ8IZU1 332 aaPredicted RBP21.15■□□□□ 0.98
SCAF11-209ENST00000547018 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.97
SCAF11-209ENST00000547018 PABPN1Q86U42 306 aaKnown RBP eCLIP21.13■□□□□ 0.97
SCAF11-209ENST00000547018 RSF1Q96T23 1441 aaPredicted RBP21■□□□□ 0.95
SCAF11-209ENST00000547018 CECR2Q9BXF3 1484 aa21■□□□□ 0.95
SCAF11-209ENST00000547018 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
SCAF11-209ENST00000547018 NACADO15069 1562 aa20.92■□□□□ 0.94
SCAF11-209ENST00000547018 PCGF6Q9BYE7 350 aa20.8■□□□□ 0.92
SCAF11-209ENST00000547018 RB1CC1Q8TDY2 1594 aa20.78■□□□□ 0.92
SCAF11-209ENST00000547018 MROH2BQ7Z745 1585 aa20.76■□□□□ 0.91
SCAF11-209ENST00000547018 WIZO95785 1651 aa20.61■□□□□ 0.89
SCAF11-209ENST00000547018 PPARGC1BQ86YN6 1023 aaKnown RBP20.55■□□□□ 0.88
SCAF11-209ENST00000547018 TTBK1Q5TCY1 1321 aaPredicted RBP20.45■□□□□ 0.86
SCAF11-209ENST00000547018 BAZ1AQ9NRL2 1556 aaPredicted RBP20.36■□□□□ 0.85
SCAF11-209ENST00000547018 UNC13AQ9UPW8 1703 aa20.32■□□□□ 0.84
SCAF11-209ENST00000547018 RANGAP1P46060 587 aaPredicted RBP20.28■□□□□ 0.84
SCAF11-209ENST00000547018 CCDC88BA6NC98 1476 aa20.23■□□□□ 0.83
SCAF11-209ENST00000547018 SMARCA4P51532 1647 aa20.22■□□□□ 0.83
SCAF11-209ENST00000547018 ABCC8Q09428 1581 aa20.2■□□□□ 0.83
SCAF11-209ENST00000547018 BICRAQ9NZM4 1560 aa20.18■□□□□ 0.82
SCAF11-209ENST00000547018 UBTFP17480 764 aaKnown RBP20.15■□□□□ 0.82
SCAF11-209ENST00000547018 HRCP23327 699 aa20.14■□□□□ 0.81
SCAF11-209ENST00000547018 TRIM26Q12899 539 aaPredicted RBP20.11■□□□□ 0.81
SCAF11-209ENST00000547018 TOP2AP11388 1531 aaKnown RBP20.07■□□□□ 0.8
SCAF11-209ENST00000547018 SMARCA2P51531 1590 aa20.01■□□□□ 0.79
SCAF11-209ENST00000547018 SOGA1O94964 1423 aa20■□□□□ 0.79
SCAF11-209ENST00000547018 BAZ1BQ9UIG0 1483 aaKnown RBP19.96■□□□□ 0.79
SCAF11-209ENST00000547018 ATAD2BQ9ULI0 1458 aa19.93■□□□□ 0.78
SCAF11-209ENST00000547018 RUSC2Q8N2Y8 1516 aa19.92■□□□□ 0.78
SCAF11-209ENST00000547018 CSRNP3Q8WYN3 585 aa19.92■□□□□ 0.78
SCAF11-209ENST00000547018 WRNQ14191 1432 aaPredicted RBP eCLIP19.83■□□□□ 0.76
SCAF11-209ENST00000547018 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.75■□□□□ 0.75
SCAF11-209ENST00000547018 EIF4G1Q04637 1599 aaKnown RBP19.72■□□□□ 0.75
SCAF11-209ENST00000547018 CEP162Q5TB80 1403 aa19.65■□□□□ 0.74
SCAF11-209ENST00000547018 CCER1Q8TC90 406 aaPredicted RBP19.63■□□□□ 0.73
SCAF11-209ENST00000547018 SYNJ1O43426 1573 aa19.6■□□□□ 0.73
SCAF11-209ENST00000547018 APLP2Q06481 763 aa19.58■□□□□ 0.73
SCAF11-209ENST00000547018 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
SCAF11-209ENST00000547018 PEG3Q9GZU2 1588 aa19.55■□□□□ 0.72
SCAF11-209ENST00000547018 DNAJC5BQ9UF47 199 aa19.54■□□□□ 0.72
SCAF11-209ENST00000547018 TNIKQ9UKE5 1360 aa19.5■□□□□ 0.71
SCAF11-209ENST00000547018 ATP1B4Q9UN42 357 aaPredicted RBP19.49■□□□□ 0.71
SCAF11-209ENST00000547018 NCAPD3P42695 1498 aa19.47■□□□□ 0.71
SCAF11-209ENST00000547018 GOLGA3Q08378 1498 aa19.47■□□□□ 0.71
SCAF11-209ENST00000547018 RAPGEF2Q9Y4G8 1499 aa19.44■□□□□ 0.7
SCAF11-209ENST00000547018 P3H3Q8IVL6 736 aa19.42■□□□□ 0.7
SCAF11-209ENST00000547018 EEA1Q15075 1411 aa19.42■□□□□ 0.7
SCAF11-209ENST00000547018 CLIP1P30622 1438 aa19.41■□□□□ 0.7
SCAF11-209ENST00000547018 ITGAEP38570 1179 aa19.37■□□□□ 0.69
SCAF11-209ENST00000547018 CEP164Q9UPV0 1460 aa19.37■□□□□ 0.69
SCAF11-209ENST00000547018 ZEB1P37275 1124 aaPredicted RBP19.36■□□□□ 0.69
SCAF11-209ENST00000547018 CC2D2AQ9P2K1 1620 aa19.33■□□□□ 0.68
SCAF11-209ENST00000547018 CADPSQ9ULU8 1353 aa19.3■□□□□ 0.68
SCAF11-209ENST00000547018 CUX1P39880 1505 aa19.29■□□□□ 0.68
SCAF11-209ENST00000547018 NESP48681 1621 aa19.29■□□□□ 0.68
SCAF11-209ENST00000547018 HMGXB3Q12766 1538 aa19.28■□□□□ 0.68
SCAF11-209ENST00000547018 CFTRP13569 1480 aa19.26■□□□□ 0.67
SCAF11-209ENST00000547018 CUX2O14529 1486 aa19.25■□□□□ 0.67
SCAF11-209ENST00000547018 KIF27Q86VH2 1401 aa19.24■□□□□ 0.67
SCAF11-209ENST00000547018 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
SCAF11-209ENST00000547018 KANK4Q5T7N3 995 aaPredicted RBP19.2■□□□□ 0.66
SCAF11-209ENST00000547018 RAD54L2Q9Y4B4 1467 aa19.13■□□□□ 0.65
SCAF11-209ENST00000547018 FANCD2Q9BXW9 1451 aa19.13■□□□□ 0.65
SCAF11-209ENST00000547018 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
SCAF11-209ENST00000547018 VPS8Q8N3P4 1428 aa19.11■□□□□ 0.65
SCAF11-209ENST00000547018 ARID3CA6NKF2 412 aa19.1■□□□□ 0.65
SCAF11-209ENST00000547018 CARMIL1Q5VZK9 1371 aa19.09■□□□□ 0.65
SCAF11-209ENST00000547018 IGF1RP08069 1367 aa19.08■□□□□ 0.65
SCAF11-209ENST00000547018 TDRD9Q8NDG6 1382 aaKnown RBP19.08■□□□□ 0.65
SCAF11-209ENST00000547018 KIF21BO75037 1637 aa19.08■□□□□ 0.64
SCAF11-209ENST00000547018 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
SCAF11-209ENST00000547018 BIVM-ERCC5R4GMW8 1640 aa19.02■□□□□ 0.64
SCAF11-209ENST00000547018 FAM50AQ14320 339 aaKnown RBP19■□□□□ 0.63
SCAF11-209ENST00000547018 ARAP1Q96P48 1450 aa19■□□□□ 0.63
SCAF11-209ENST00000547018 FBLN2P98095 1184 aa18.91■□□□□ 0.62
SCAF11-209ENST00000547018 DIEXFQ68CQ4 756 aaKnown RBP18.89■□□□□ 0.62
SCAF11-209ENST00000547018 POLA1P09884 1462 aaPredicted RBP18.89■□□□□ 0.61
SCAF11-209ENST00000547018 ARHGAP35Q9NRY4 1499 aa18.88■□□□□ 0.61
SCAF11-209ENST00000547018 TOPBP1Q92547 1522 aa18.88■□□□□ 0.61
SCAF11-209ENST00000547018 FHOD3Q2V2M9 1422 aa18.86■□□□□ 0.61
SCAF11-209ENST00000547018 YTHDC1Q96MU7 727 aaKnown RBP18.84■□□□□ 0.61
SCAF11-209ENST00000547018 ERICH3Q5RHP9 1530 aa18.84■□□□□ 0.61
SCAF11-209ENST00000547018 PDS5BQ9NTI5 1447 aa18.81■□□□□ 0.6
SCAF11-209ENST00000547018 URB2Q14146 1524 aaKnown RBP18.8■□□□□ 0.6
SCAF11-209ENST00000547018 NEUROD1Q13562 356 aa18.76■□□□□ 0.59
SCAF11-209ENST00000547018 AQRO60306 1485 aaKnown RBP eCLIP18.75■□□□□ 0.598e-11■□□□□ 11.3
SCAF11-209ENST00000547018 DNMBPQ6XZF7 1577 aa18.74■□□□□ 0.59
SCAF11-209ENST00000547018 ZNF316A6NFI3 1004 aaPredicted RBP18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms