RNA–Protein interactions for RNA: ENST00000541990.5

THBS3-211, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 2,928 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-211ENST00000541990 NISCHQ9Y2I1 1504 aa19.32■□□□□ 0.68
THBS3-211ENST00000541990 DCAF8L2P0C7V8 631 aa16.7■□□□□ 0.26
THBS3-211ENST00000541990 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
THBS3-211ENST00000541990 SHROOM4Q9ULL8 1493 aa16.45■□□□□ 0.22
THBS3-211ENST00000541990 ABCC9O60706 1549 aa16.27■□□□□ 0.19
THBS3-211ENST00000541990 ZCCHC6Q5VYS8 1495 aaKnown RBP16.18■□□□□ 0.18
THBS3-211ENST00000541990 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.12
THBS3-211ENST00000541990 SCRIBQ14160 1630 aa15.68■□□□□ 0.1
THBS3-211ENST00000541990 DCAF1Q9Y4B6 1507 aa15.65■□□□□ 0.1
THBS3-211ENST00000541990 PABPN1Q86U42 306 aaKnown RBP eCLIP15.58■□□□□ 0.08
THBS3-211ENST00000541990 NACADO15069 1562 aa15.49■□□□□ 0.07
THBS3-211ENST00000541990 RB1CC1Q8TDY2 1594 aa15.42■□□□□ 0.06
THBS3-211ENST00000541990 MYO15BQ96JP2 1530 aa15.38■□□□□ 0.05
THBS3-211ENST00000541990 HRCP23327 699 aa15.35■□□□□ 0.05
THBS3-211ENST00000541990 CECR2Q9BXF3 1484 aa15.3■□□□□ 0.04
THBS3-211ENST00000541990 PPARGC1BQ86YN6 1023 aaKnown RBP15.2■□□□□ 0.02
THBS3-211ENST00000541990 UNC13AQ9UPW8 1703 aa15.16■□□□□ 0.02
THBS3-211ENST00000541990 PCGF6Q9BYE7 350 aa15.15■□□□□ 0.02
THBS3-211ENST00000541990 RSF1Q96T23 1441 aaPredicted RBP15.15■□□□□ 0.02
THBS3-211ENST00000541990 MROH2BQ7Z745 1585 aa15.1■□□□□ 0.01
THBS3-211ENST00000541990 BICRAQ9NZM4 1560 aa15.09■□□□□ 0.01
THBS3-211ENST00000541990 CHIC1Q5VXU3 224 aa15.07■□□□□ 0
THBS3-211ENST00000541990 WIZO95785 1651 aa14.96□□□□□ -0.01
THBS3-211ENST00000541990 BAZ1AQ9NRL2 1556 aaPredicted RBP14.83□□□□□ -0.03
THBS3-211ENST00000541990 DNAJC5BQ9UF47 199 aa14.83□□□□□ -0.04
THBS3-211ENST00000541990 SMARCA4P51532 1647 aa14.81□□□□□ -0.04
THBS3-211ENST00000541990 LOC105371045A0A1W2PR82 267 aa14.79□□□□□ -0.04
THBS3-211ENST00000541990 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
THBS3-211ENST00000541990 FAM9AQ8IZU1 332 aaPredicted RBP14.73□□□□□ -0.05
THBS3-211ENST00000541990 ATAD2BQ9ULI0 1458 aa14.67□□□□□ -0.06
THBS3-211ENST00000541990 CCDC88BA6NC98 1476 aa14.66□□□□□ -0.06
THBS3-211ENST00000541990 TRIM41Q8WV44 630 aa14.65□□□□□ -0.06
THBS3-211ENST00000541990 EIF4G1Q04637 1599 aaKnown RBP14.64□□□□□ -0.07
THBS3-211ENST00000541990 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
THBS3-211ENST00000541990 TOP2AP11388 1531 aaKnown RBP14.59□□□□□ -0.07
THBS3-211ENST00000541990 TRIM26Q12899 539 aaPredicted RBP14.58□□□□□ -0.08
THBS3-211ENST00000541990 SMARCA2P51531 1590 aa14.54□□□□□ -0.08
THBS3-211ENST00000541990 SCAF1Q9H7N4 1312 aaKnown RBP14.53□□□□□ -0.08
THBS3-211ENST00000541990 ABCC8Q09428 1581 aa14.49□□□□□ -0.09
THBS3-211ENST00000541990 CC2D2AQ9P2K1 1620 aa14.47□□□□□ -0.09
THBS3-211ENST00000541990 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
THBS3-211ENST00000541990 PEG3Q9GZU2 1588 aa14.43□□□□□ -0.1
THBS3-211ENST00000541990 NCAPD3P42695 1498 aa14.42□□□□□ -0.1
THBS3-211ENST00000541990 ZEB1P37275 1124 aaPredicted RBP14.32□□□□□ -0.12
THBS3-211ENST00000541990 NESP48681 1621 aa14.3□□□□□ -0.12
THBS3-211ENST00000541990 HMGXB3Q12766 1538 aa14.27□□□□□ -0.13
THBS3-211ENST00000541990 SOGA1O94964 1423 aa14.27□□□□□ -0.13
THBS3-211ENST00000541990 RUSC2Q8N2Y8 1516 aa14.26□□□□□ -0.13
THBS3-211ENST00000541990 RANGAP1P46060 587 aaPredicted RBP14.24□□□□□ -0.13
THBS3-211ENST00000541990 WRNQ14191 1432 aaPredicted RBP eCLIP14.24□□□□□ -0.13
THBS3-211ENST00000541990 CADPSQ9ULU8 1353 aa14.19□□□□□ -0.14
THBS3-211ENST00000541990 SYNJ1O43426 1573 aa14.17□□□□□ -0.14
THBS3-211ENST00000541990 NEUROD1Q13562 356 aa14.17□□□□□ -0.14
THBS3-211ENST00000541990 CFTRP13569 1480 aa14.16□□□□□ -0.14
THBS3-211ENST00000541990 ACIN1Q9UKV3 1341 aaKnown RBP14.13□□□□□ -0.15
THBS3-211ENST00000541990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.1□□□□□ -0.15
THBS3-211ENST00000541990 UBTFP17480 764 aaKnown RBP14.1□□□□□ -0.15
THBS3-211ENST00000541990 TTBK1Q5TCY1 1321 aaPredicted RBP14.09□□□□□ -0.15
THBS3-211ENST00000541990 CSRNP3Q8WYN3 585 aa14.09□□□□□ -0.15
THBS3-211ENST00000541990 CUX1P39880 1505 aa14.06□□□□□ -0.16
THBS3-211ENST00000541990 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
THBS3-211ENST00000541990 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
THBS3-211ENST00000541990 CCER1Q8TC90 406 aaPredicted RBP13.99□□□□□ -0.17
THBS3-211ENST00000541990 RAD54L2Q9Y4B4 1467 aa13.98□□□□□ -0.17
THBS3-211ENST00000541990 MYT1Q01538 1121 aa13.97□□□□□ -0.17
THBS3-211ENST00000541990 DIEXFQ68CQ4 756 aaKnown RBP13.95□□□□□ -0.18
THBS3-211ENST00000541990 TOP2BQ02880 1626 aa13.93□□□□□ -0.18
THBS3-211ENST00000541990 FGD5Q6ZNL6 1462 aa13.93□□□□□ -0.18
THBS3-211ENST00000541990 TDRD9Q8NDG6 1382 aaKnown RBP13.91□□□□□ -0.18
THBS3-211ENST00000541990 CUX2O14529 1486 aa13.91□□□□□ -0.18
THBS3-211ENST00000541990 CEP164Q9UPV0 1460 aa13.9□□□□□ -0.18
THBS3-211ENST00000541990 URB2Q14146 1524 aaKnown RBP13.89□□□□□ -0.19
THBS3-211ENST00000541990 RAPGEF2Q9Y4G8 1499 aa13.89□□□□□ -0.19
THBS3-211ENST00000541990 PDS5BQ9NTI5 1447 aa13.88□□□□□ -0.19
THBS3-211ENST00000541990 TOPBP1Q92547 1522 aa13.87□□□□□ -0.19
THBS3-211ENST00000541990 CENPBP07199 599 aaPredicted RBP13.87□□□□□ -0.19
THBS3-211ENST00000541990 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
THBS3-211ENST00000541990 KIF21AQ7Z4S6 1674 aa13.84□□□□□ -0.19
THBS3-211ENST00000541990 ERCC6Q03468 1493 aa13.84□□□□□ -0.19
THBS3-211ENST00000541990 LAMC3Q9Y6N6 1575 aa13.83□□□□□ -0.2
THBS3-211ENST00000541990 BIVM-ERCC5R4GMW8 1640 aa13.83□□□□□ -0.2
THBS3-211ENST00000541990 P3H3Q8IVL6 736 aa13.83□□□□□ -0.2
THBS3-211ENST00000541990 KIF27Q86VH2 1401 aa13.82□□□□□ -0.2
THBS3-211ENST00000541990 IGF1RP08069 1367 aa13.81□□□□□ -0.2
THBS3-211ENST00000541990 YTHDC1Q96MU7 727 aaKnown RBP13.81□□□□□ -0.2
THBS3-211ENST00000541990 CEP162Q5TB80 1403 aa13.81□□□□□ -0.2
THBS3-211ENST00000541990 AQRO60306 1485 aaKnown RBP eCLIP13.77□□□□□ -0.2
THBS3-211ENST00000541990 GOLGA3Q08378 1498 aa13.77□□□□□ -0.2
THBS3-211ENST00000541990 EEA1Q15075 1411 aa13.77□□□□□ -0.21
THBS3-211ENST00000541990 DNMBPQ6XZF7 1577 aa13.75□□□□□ -0.21
THBS3-211ENST00000541990 TNIKQ9UKE5 1360 aa13.75□□□□□ -0.21
THBS3-211ENST00000541990 PRDM2Q13029 1718 aa13.75□□□□□ -0.21
THBS3-211ENST00000541990 CARMIL1Q5VZK9 1371 aa13.74□□□□□ -0.21
THBS3-211ENST00000541990 FBLN2P98095 1184 aa13.73□□□□□ -0.21
THBS3-211ENST00000541990 ZNF608Q9ULD9 1512 aaPredicted RBP13.72□□□□□ -0.21
THBS3-211ENST00000541990 ATP1B4Q9UN42 357 aaPredicted RBP13.7□□□□□ -0.22
THBS3-211ENST00000541990 PRXQ9BXM0 1461 aa13.7□□□□□ -0.22
THBS3-211ENST00000541990 MRC2Q9UBG0 1479 aa13.69□□□□□ -0.22
THBS3-211ENST00000541990 CLIP1P30622 1438 aa13.69□□□□□ -0.22
THBS3-211ENST00000541990 ZNF316A6NFI3 1004 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms