RNA–Protein interactions for RNA: ENST00000541589.5

LMO3-226, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 1,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-226ENST00000541589 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
LMO3-226ENST00000541589 CHIC1Q5VXU3 224 aa22.41■■□□□ 1.18
LMO3-226ENST00000541589 SENP3Q9H4L4 574 aaPredicted RBP19.79■□□□□ 0.76
LMO3-226ENST00000541589 PHF23Q9BUL5 403 aaPredicted RBP19.7■□□□□ 0.74
LMO3-226ENST00000541589 NISCHQ9Y2I1 1504 aa19.52■□□□□ 0.72
LMO3-226ENST00000541589 POTEDQ86YR6 584 aa19.35■□□□□ 0.69
LMO3-226ENST00000541589 FOXD1Q16676 465 aa18.65■□□□□ 0.58
LMO3-226ENST00000541589 ABCC9O60706 1549 aa18.13■□□□□ 0.49
LMO3-226ENST00000541589 PLPPR3Q6T4P5 718 aa18.01■□□□□ 0.47
LMO3-226ENST00000541589 MSH5O43196 834 aa17.8■□□□□ 0.44
LMO3-226ENST00000541589 CCDC180Q9P1Z9 1646 aa17.67■□□□□ 0.42
LMO3-226ENST00000541589 PPP6R1Q9UPN7 881 aa17.5■□□□□ 0.39
LMO3-226ENST00000541589 DNAJC5BQ9UF47 199 aa17.49■□□□□ 0.39
LMO3-226ENST00000541589 ADRA2BP18089 450 aa17.44■□□□□ 0.38
LMO3-226ENST00000541589 PIAS4Q8N2W9 510 aaPredicted RBP17.25■□□□□ 0.35
LMO3-226ENST00000541589 RB1CC1Q8TDY2 1594 aa17.05■□□□□ 0.32
LMO3-226ENST00000541589 NACADO15069 1562 aa16.84■□□□□ 0.29
LMO3-226ENST00000541589 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
LMO3-226ENST00000541589 UNC13AQ9UPW8 1703 aa16.64■□□□□ 0.25
LMO3-226ENST00000541589 BICRAQ9NZM4 1560 aa16.62■□□□□ 0.25
LMO3-226ENST00000541589 DCAF8L2P0C7V8 631 aa16.59■□□□□ 0.25
LMO3-226ENST00000541589 MYO15BQ96JP2 1530 aa16.51■□□□□ 0.23
LMO3-226ENST00000541589 CECR2Q9BXF3 1484 aa16.39■□□□□ 0.21
LMO3-226ENST00000541589 DNAJC5Q9H3Z4 198 aa16.38■□□□□ 0.21
LMO3-226ENST00000541589 CC2D2AQ9P2K1 1620 aa16.35■□□□□ 0.21
LMO3-226ENST00000541589 SHROOM4Q9ULL8 1493 aa16.35■□□□□ 0.21
LMO3-226ENST00000541589 EIF4G1Q04637 1599 aaKnown RBP16.22■□□□□ 0.19
LMO3-226ENST00000541589 DCAF1Q9Y4B6 1507 aa16.12■□□□□ 0.17
LMO3-226ENST00000541589 ZCCHC6Q5VYS8 1495 aaKnown RBP16.08■□□□□ 0.16
LMO3-226ENST00000541589 SCRIBQ14160 1630 aa16.05■□□□□ 0.16
LMO3-226ENST00000541589 CACNB1Q02641 598 aaPredicted RBP15.97■□□□□ 0.15
LMO3-226ENST00000541589 MAPK8IP2Q13387 824 aaPredicted RBP15.93■□□□□ 0.14
LMO3-226ENST00000541589 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
LMO3-226ENST00000541589 PPP4R3CPQ6ZMV5 832 aa15.84■□□□□ 0.13
LMO3-226ENST00000541589 CUX2O14529 1486 aa15.84■□□□□ 0.13
LMO3-226ENST00000541589 DMRT2Q9Y5R5 561 aa15.76■□□□□ 0.11
LMO3-226ENST00000541589 ERCC6Q03468 1493 aa15.65■□□□□ 0.1
LMO3-226ENST00000541589 NCAPD3P42695 1498 aa15.59■□□□□ 0.09
LMO3-226ENST00000541589 CNKSR2Q8WXI2 1034 aa15.47■□□□□ 0.07
LMO3-226ENST00000541589 ATAD2BQ9ULI0 1458 aa15.47■□□□□ 0.07
LMO3-226ENST00000541589 NESP48681 1621 aa15.46■□□□□ 0.06
LMO3-226ENST00000541589 HMGXB3Q12766 1538 aa15.41■□□□□ 0.06
LMO3-226ENST00000541589 THOC2Q8NI27 1593 aaKnown RBP15.39■□□□□ 0.05
LMO3-226ENST00000541589 TRIM41Q8WV44 630 aa15.39■□□□□ 0.05
LMO3-226ENST00000541589 SMARCA2P51531 1590 aa15.36■□□□□ 0.05
LMO3-226ENST00000541589 HOXD11P31277 338 aaPredicted RBP15.31■□□□□ 0.04
LMO3-226ENST00000541589 SMARCA4P51532 1647 aa15.29■□□□□ 0.04
LMO3-226ENST00000541589 NCBP3Q53F19 620 aaKnown RBP15.29■□□□□ 0.04
LMO3-226ENST00000541589 LAMC3Q9Y6N6 1575 aa15.27■□□□□ 0.03
LMO3-226ENST00000541589 RNF216Q9NWF9 866 aaPredicted RBP15.27■□□□□ 0.03
LMO3-226ENST00000541589 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
LMO3-226ENST00000541589 PDS5BQ9NTI5 1447 aa15.21■□□□□ 0.02
LMO3-226ENST00000541589 PEG3Q9GZU2 1588 aa15.2■□□□□ 0.02
LMO3-226ENST00000541589 KIF21AQ7Z4S6 1674 aa15.19■□□□□ 0.02
LMO3-226ENST00000541589 BAZ1AQ9NRL2 1556 aaPredicted RBP15.16■□□□□ 0.02
LMO3-226ENST00000541589 RNF39Q9H2S5 420 aa15.14■□□□□ 0.01
LMO3-226ENST00000541589 NPM3O75607 178 aaKnown RBP15.12■□□□□ 0.01
LMO3-226ENST00000541589 KCNA4P22459 653 aa15.1■□□□□ 0.01
LMO3-226ENST00000541589 MRC2Q9UBG0 1479 aa15.09■□□□□ 0.01
LMO3-226ENST00000541589 WDR62O43379 1518 aa15.09■□□□□ 0.01
LMO3-226ENST00000541589 CADPSQ9ULU8 1353 aa15.09■□□□□ 0.01
LMO3-226ENST00000541589 OSCARQ8IYS5 282 aa15.03■□□□□ -0
LMO3-226ENST00000541589 MROH2BQ7Z745 1585 aa15.03■□□□□ -0
LMO3-226ENST00000541589 DCAF8L1A6NGE4 600 aa15.02■□□□□ -0
LMO3-226ENST00000541589 CEP164Q9UPV0 1460 aa14.93□□□□□ -0.02
LMO3-226ENST00000541589 POTEHQ6S545 545 aa14.91□□□□□ -0.02
LMO3-226ENST00000541589 FANCD2Q9BXW9 1451 aa14.88□□□□□ -0.03
LMO3-226ENST00000541589 RIMBP3CA6NJZ7 1639 aa14.87□□□□□ -0.03
LMO3-226ENST00000541589 RIMBP3BA6NNM3 1639 aa14.87□□□□□ -0.03
LMO3-226ENST00000541589 RIMBP3Q9UFD9 1639 aa14.87□□□□□ -0.03
LMO3-226ENST00000541589 CFTRP13569 1480 aa14.82□□□□□ -0.04
LMO3-226ENST00000541589 URB2Q14146 1524 aaKnown RBP14.81□□□□□ -0.04
LMO3-226ENST00000541589 C1QBPQ07021 282 aaKnown RBP14.8□□□□□ -0.04
LMO3-226ENST00000541589 WIZO95785 1651 aa14.79□□□□□ -0.04
LMO3-226ENST00000541589 ARHGEF11O15085 1522 aa14.79□□□□□ -0.04
LMO3-226ENST00000541589 ZNF608Q9ULD9 1512 aaPredicted RBP14.7□□□□□ -0.06
LMO3-226ENST00000541589 CYB5RLQ6IPT4 315 aa14.69□□□□□ -0.06
LMO3-226ENST00000541589 IFT140Q96RY7 1462 aa14.67□□□□□ -0.06
LMO3-226ENST00000541589 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
LMO3-226ENST00000541589 ARAP1Q96P48 1450 aa14.62□□□□□ -0.07
LMO3-226ENST00000541589 TOP2AP11388 1531 aaKnown RBP14.59□□□□□ -0.07
LMO3-226ENST00000541589 RSF1Q96T23 1441 aaPredicted RBP14.56□□□□□ -0.08
LMO3-226ENST00000541589 EIF4G3O43432 1585 aaKnown RBP14.56□□□□□ -0.08
LMO3-226ENST00000541589 TOPBP1Q92547 1522 aa14.56□□□□□ -0.08
LMO3-226ENST00000541589 PRDM2Q13029 1718 aa14.54□□□□□ -0.08
LMO3-226ENST00000541589 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.53□□□□□ -0.08
LMO3-226ENST00000541589 CHD1O14646 1710 aa14.51□□□□□ -0.09
LMO3-226ENST00000541589 AQRO60306 1485 aaKnown RBP eCLIP14.5□□□□□ -0.09
LMO3-226ENST00000541589 ABCC8Q09428 1581 aa14.49□□□□□ -0.09
LMO3-226ENST00000541589 TARBP1Q13395 1621 aaKnown RBP14.47□□□□□ -0.09
LMO3-226ENST00000541589 CCDC88BA6NC98 1476 aa14.45□□□□□ -0.1
LMO3-226ENST00000541589 DNMBPQ6XZF7 1577 aa14.45□□□□□ -0.1
LMO3-226ENST00000541589 FBLN2P98095 1184 aa14.44□□□□□ -0.1
LMO3-226ENST00000541589 CLASP1Q7Z460 1538 aa14.4□□□□□ -0.1
LMO3-226ENST00000541589 SLC4A2P04920 1241 aa14.38□□□□□ -0.11
LMO3-226ENST00000541589 POLA1P09884 1462 aaPredicted RBP14.38□□□□□ -0.11
LMO3-226ENST00000541589 TDRD9Q8NDG6 1382 aaKnown RBP14.33□□□□□ -0.12
LMO3-226ENST00000541589 RAD54L2Q9Y4B4 1467 aa14.33□□□□□ -0.12
LMO3-226ENST00000541589 SNAPC4Q5SXM2 1469 aa14.32□□□□□ -0.12
LMO3-226ENST00000541589 SYNJ1O43426 1573 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms