RNA–Protein interactions for RNA: ENST00000540608.5

NPC1-202, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 2

Gene NPC1, Length 2,790 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-202ENST00000540608 NISCHQ9Y2I1 1504 aa25.29■■□□□ 1.64
NPC1-202ENST00000540608 CCDC180Q9P1Z9 1646 aa21.53■■□□□ 1.04
NPC1-202ENST00000540608 SHROOM4Q9ULL8 1493 aa21.49■■□□□ 1.03
NPC1-202ENST00000540608 ZCCHC6Q5VYS8 1495 aaKnown RBP21.39■■□□□ 1.01
NPC1-202ENST00000540608 SUPT5HO00267 1087 aaKnown RBP21.08■□□□□ 0.97
NPC1-202ENST00000540608 DCAF8L2P0C7V8 631 aa20.93■□□□□ 0.94
NPC1-202ENST00000540608 DCAF1Q9Y4B6 1507 aa20.76■□□□□ 0.91
NPC1-202ENST00000540608 CHIC1Q5VXU3 224 aa20.64■□□□□ 0.9
NPC1-202ENST00000540608 MYO15BQ96JP2 1530 aa20.57■□□□□ 0.88
NPC1-202ENST00000540608 HRCP23327 699 aa20.34■□□□□ 0.85
NPC1-202ENST00000540608 ABCC9O60706 1549 aa20.31■□□□□ 0.84
NPC1-202ENST00000540608 SCRIBQ14160 1630 aa20.17■□□□□ 0.82
NPC1-202ENST00000540608 PCGF6Q9BYE7 350 aa20.16■□□□□ 0.82
NPC1-202ENST00000540608 NACADO15069 1562 aa20.05■□□□□ 0.8
NPC1-202ENST00000540608 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
NPC1-202ENST00000540608 RSF1Q96T23 1441 aaPredicted RBP19.99■□□□□ 0.79
NPC1-202ENST00000540608 RB1CC1Q8TDY2 1594 aa19.89■□□□□ 0.77
NPC1-202ENST00000540608 PPARGC1BQ86YN6 1023 aaKnown RBP19.81■□□□□ 0.76
NPC1-202ENST00000540608 TRIM26Q12899 539 aaPredicted RBP19.79■□□□□ 0.76
NPC1-202ENST00000540608 CECR2Q9BXF3 1484 aa19.73■□□□□ 0.75
NPC1-202ENST00000540608 TRIM41Q8WV44 630 aa19.67■□□□□ 0.74
NPC1-202ENST00000540608 MROH2BQ7Z745 1585 aa19.66■□□□□ 0.74
NPC1-202ENST00000540608 WIZO95785 1651 aa19.56■□□□□ 0.72
NPC1-202ENST00000540608 ZEB1P37275 1124 aaPredicted RBP19.48■□□□□ 0.71
NPC1-202ENST00000540608 UNC13AQ9UPW8 1703 aa19.47■□□□□ 0.71
NPC1-202ENST00000540608 FAM9AQ8IZU1 332 aaPredicted RBP19.45■□□□□ 0.7
NPC1-202ENST00000540608 BAZ1AQ9NRL2 1556 aaPredicted RBP19.43■□□□□ 0.7
NPC1-202ENST00000540608 EIF4G1Q04637 1599 aaKnown RBP19.29■□□□□ 0.68
NPC1-202ENST00000540608 BICRAQ9NZM4 1560 aa19.29■□□□□ 0.68
NPC1-202ENST00000540608 SMARCA4P51532 1647 aa19.28■□□□□ 0.68
NPC1-202ENST00000540608 EHMT2Q96KQ7 1210 aa19.27■□□□□ 0.68
NPC1-202ENST00000540608 TOP2AP11388 1531 aaKnown RBP19.24■□□□□ 0.67
NPC1-202ENST00000540608 CCDC88BA6NC98 1476 aa19.16■□□□□ 0.66
NPC1-202ENST00000540608 SMARCA2P51531 1590 aa19.15■□□□□ 0.66
NPC1-202ENST00000540608 ABCC8Q09428 1581 aa19.1■□□□□ 0.65
NPC1-202ENST00000540608 PABPN1Q86U42 306 aaKnown RBP eCLIP19.09■□□□□ 0.65
NPC1-202ENST00000540608 WRNQ14191 1432 aaPredicted RBP eCLIP18.94■□□□□ 0.62
NPC1-202ENST00000540608 PEG3Q9GZU2 1588 aa18.91■□□□□ 0.62
NPC1-202ENST00000540608 SOGA1O94964 1423 aa18.9■□□□□ 0.62
NPC1-202ENST00000540608 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.9■□□□□ 0.62
NPC1-202ENST00000540608 CCER1Q8TC90 406 aaPredicted RBP18.89■□□□□ 0.61
NPC1-202ENST00000540608 CEP162Q5TB80 1403 aa18.85■□□□□ 0.61
NPC1-202ENST00000540608 TNIKQ9UKE5 1360 aa18.85■□□□□ 0.61
NPC1-202ENST00000540608 EEA1Q15075 1411 aa18.84■□□□□ 0.61
NPC1-202ENST00000540608 RUSC2Q8N2Y8 1516 aa18.82■□□□□ 0.6
NPC1-202ENST00000540608 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
NPC1-202ENST00000540608 CSRNP3Q8WYN3 585 aa18.79■□□□□ 0.6
NPC1-202ENST00000540608 ATAD2BQ9ULI0 1458 aa18.79■□□□□ 0.6
NPC1-202ENST00000540608 PELP1Q8IZL8 1130 aaKnown RBP18.73■□□□□ 0.59
NPC1-202ENST00000540608 BAZ1BQ9UIG0 1483 aaKnown RBP18.73■□□□□ 0.59
NPC1-202ENST00000540608 SYNJ1O43426 1573 aa18.7■□□□□ 0.58
NPC1-202ENST00000540608 UBTFP17480 764 aaKnown RBP18.7■□□□□ 0.58
NPC1-202ENST00000540608 GOLGA3Q08378 1498 aa18.69■□□□□ 0.58
NPC1-202ENST00000540608 TTBK1Q5TCY1 1321 aaPredicted RBP18.66■□□□□ 0.58
NPC1-202ENST00000540608 DIEXFQ68CQ4 756 aaKnown RBP18.64■□□□□ 0.57
NPC1-202ENST00000540608 ACIN1Q9UKV3 1341 aaKnown RBP18.62■□□□□ 0.57
NPC1-202ENST00000540608 CEP164Q9UPV0 1460 aa18.57■□□□□ 0.56
NPC1-202ENST00000540608 KIF21BO75037 1637 aa18.55■□□□□ 0.56
NPC1-202ENST00000540608 NEUROD1Q13562 356 aa18.54■□□□□ 0.56
NPC1-202ENST00000540608 CENPBP07199 599 aaPredicted RBP18.49■□□□□ 0.55
NPC1-202ENST00000540608 NCAPD3P42695 1498 aa18.48■□□□□ 0.55
NPC1-202ENST00000540608 ZNF316A6NFI3 1004 aaPredicted RBP18.47■□□□□ 0.55
NPC1-202ENST00000540608 TOP2BQ02880 1626 aa18.47■□□□□ 0.55
NPC1-202ENST00000540608 CLIP1P30622 1438 aa18.47■□□□□ 0.55
NPC1-202ENST00000540608 HMGXB3Q12766 1538 aa18.47■□□□□ 0.55
NPC1-202ENST00000540608 CC2D2AQ9P2K1 1620 aa18.46■□□□□ 0.55
NPC1-202ENST00000540608 RAPGEF2Q9Y4G8 1499 aa18.45■□□□□ 0.54
NPC1-202ENST00000540608 VPS8Q8N3P4 1428 aa18.43■□□□□ 0.54
NPC1-202ENST00000540608 BIVM-ERCC5R4GMW8 1640 aa18.41■□□□□ 0.54
NPC1-202ENST00000540608 GTF3C3Q9Y5Q9 886 aa18.38■□□□□ 0.53
NPC1-202ENST00000540608 HNRNPUL2Q1KMD3 747 aaKnown RBP18.37■□□□□ 0.53
NPC1-202ENST00000540608 APLP2Q06481 763 aa18.34■□□□□ 0.53
NPC1-202ENST00000540608 RANGAP1P46060 587 aaPredicted RBP18.32■□□□□ 0.52
NPC1-202ENST00000540608 CUX1P39880 1505 aa18.31■□□□□ 0.52
NPC1-202ENST00000540608 CFTRP13569 1480 aa18.27■□□□□ 0.52
NPC1-202ENST00000540608 PRXQ9BXM0 1461 aa18.27■□□□□ 0.52
NPC1-202ENST00000540608 ERICH3Q5RHP9 1530 aa18.25■□□□□ 0.51
NPC1-202ENST00000540608 MIER1Q8N108 512 aa18.2■□□□□ 0.5
NPC1-202ENST00000540608 KIF27Q86VH2 1401 aa18.19■□□□□ 0.5
NPC1-202ENST00000540608 ARAP1Q96P48 1450 aa18.17■□□□□ 0.5
NPC1-202ENST00000540608 CLSPNQ9HAW4 1339 aa18.17■□□□□ 0.5
NPC1-202ENST00000540608 YTHDC1Q96MU7 727 aaKnown RBP18.13■□□□□ 0.49
NPC1-202ENST00000540608 PRDM2Q13029 1718 aa18.13■□□□□ 0.49
NPC1-202ENST00000540608 DHX57Q6P158 1386 aaKnown RBP18.09■□□□□ 0.49
NPC1-202ENST00000540608 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
NPC1-202ENST00000540608 CADPSQ9ULU8 1353 aa18.07■□□□□ 0.48
NPC1-202ENST00000540608 DNAJC5BQ9UF47 199 aa18.07■□□□□ 0.48
NPC1-202ENST00000540608 RRBP1Q9P2E9 1410 aaKnown RBP18.04■□□□□ 0.48
NPC1-202ENST00000540608 CUX2O14529 1486 aa18.03■□□□□ 0.48
NPC1-202ENST00000540608 ARHGAP35Q9NRY4 1499 aa18.02■□□□□ 0.48
NPC1-202ENST00000540608 IGF1RP08069 1367 aa18.01■□□□□ 0.47
NPC1-202ENST00000540608 FGD5Q6ZNL6 1462 aa17.98■□□□□ 0.47
NPC1-202ENST00000540608 CCNB3Q8WWL7 1395 aa17.94■□□□□ 0.46
NPC1-202ENST00000540608 CARMIL1Q5VZK9 1371 aa17.92■□□□□ 0.46
NPC1-202ENST00000540608 FANCD2Q9BXW9 1451 aa17.9■□□□□ 0.46
NPC1-202ENST00000540608 LAMC3Q9Y6N6 1575 aa17.89■□□□□ 0.46
NPC1-202ENST00000540608 MAP3K1Q13233 1512 aa17.86■□□□□ 0.45
NPC1-202ENST00000540608 MYT1Q01538 1121 aa17.84■□□□□ 0.45
NPC1-202ENST00000540608 RAD54L2Q9Y4B4 1467 aa17.81■□□□□ 0.44
NPC1-202ENST00000540608 TIAM1Q13009 1591 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms