RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
USP28-208ENST00000540438 SHROOM4Q9ULL8 1493 aa30.77■■■□□ 2.52
USP28-208ENST00000540438 DCAF8L2P0C7V8 631 aa30.35■■■□□ 2.45
USP28-208ENST00000540438 SUPT5HO00267 1087 aaKnown RBP30.08■■■□□ 2.41
USP28-208ENST00000540438 ZCCHC6Q5VYS8 1495 aaKnown RBP29.43■■■□□ 2.3
USP28-208ENST00000540438 CCDC180Q9P1Z9 1646 aa29.3■■■□□ 2.28
USP28-208ENST00000540438 CHIC1Q5VXU3 224 aa28.67■■■□□ 2.18
USP28-208ENST00000540438 MYO15BQ96JP2 1530 aa28.52■■■□□ 2.16
USP28-208ENST00000540438 ABCC9O60706 1549 aa28.39■■■□□ 2.14
USP28-208ENST00000540438 LOC105371045A0A1W2PR82 267 aa28.27■■■□□ 2.12
USP28-208ENST00000540438 SCRIBQ14160 1630 aa28.26■■■□□ 2.11
USP28-208ENST00000540438 EHMT2Q96KQ7 1210 aa28.19■■■□□ 2.1
USP28-208ENST00000540438 DCAF1Q9Y4B6 1507 aa28.16■■■□□ 2.1
USP28-208ENST00000540438 FAM9AQ8IZU1 332 aaPredicted RBP27.99■■■□□ 2.07
USP28-208ENST00000540438 PCGF6Q9BYE7 350 aa27.99■■■□□ 2.07
USP28-208ENST00000540438 RSF1Q96T23 1441 aaPredicted RBP27.81■■■□□ 2.04
USP28-208ENST00000540438 CECR2Q9BXF3 1484 aa27.71■■■□□ 2.03
USP28-208ENST00000540438 TRIM41Q8WV44 630 aa27.69■■■□□ 2.02
USP28-208ENST00000540438 RB1CC1Q8TDY2 1594 aa27.54■■■□□ 2
USP28-208ENST00000540438 PPARGC1BQ86YN6 1023 aaKnown RBP27.49■■□□□ 1.99
USP28-208ENST00000540438 PABPN1Q86U42 306 aaKnown RBP eCLIP27.46■■□□□ 1.99
USP28-208ENST00000540438 MROH2BQ7Z745 1585 aa27.42■■□□□ 1.98
USP28-208ENST00000540438 HRCP23327 699 aa27.38■■□□□ 1.97
USP28-208ENST00000540438 NACADO15069 1562 aa27.35■■□□□ 1.97
USP28-208ENST00000540438 WIZO95785 1651 aa27.26■■□□□ 1.95
USP28-208ENST00000540438 TTBK1Q5TCY1 1321 aaPredicted RBP27.12■■□□□ 1.93
USP28-208ENST00000540438 TRIM26Q12899 539 aaPredicted RBP27■■□□□ 1.91
USP28-208ENST00000540438 ABCC8Q09428 1581 aa26.8■■□□□ 1.88
USP28-208ENST00000540438 BAZ1AQ9NRL2 1556 aaPredicted RBP26.77■■□□□ 1.88
USP28-208ENST00000540438 CCDC88BA6NC98 1476 aa26.71■■□□□ 1.87
USP28-208ENST00000540438 UNC13AQ9UPW8 1703 aa26.7■■□□□ 1.86
USP28-208ENST00000540438 RANGAP1P46060 587 aaPredicted RBP26.67■■□□□ 1.86
USP28-208ENST00000540438 SMARCA4P51532 1647 aa26.63■■□□□ 1.85
USP28-208ENST00000540438 UBTFP17480 764 aaKnown RBP26.55■■□□□ 1.84
USP28-208ENST00000540438 SOGA1O94964 1423 aa26.55■■□□□ 1.84
USP28-208ENST00000540438 TOP2AP11388 1531 aaKnown RBP26.5■■□□□ 1.83
USP28-208ENST00000540438 RUSC2Q8N2Y8 1516 aa26.49■■□□□ 1.83
USP28-208ENST00000540438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.48■■□□□ 1.83
USP28-208ENST00000540438 SMARCA2P51531 1590 aa26.47■■□□□ 1.83
USP28-208ENST00000540438 BICRAQ9NZM4 1560 aa26.46■■□□□ 1.83
USP28-208ENST00000540438 EIF4G1Q04637 1599 aaKnown RBP26.34■■□□□ 1.81
USP28-208ENST00000540438 CSRNP3Q8WYN3 585 aa26.32■■□□□ 1.8
USP28-208ENST00000540438 CCER1Q8TC90 406 aaPredicted RBP26.22■■□□□ 1.79
USP28-208ENST00000540438 CEP162Q5TB80 1403 aa26.16■■□□□ 1.78
USP28-208ENST00000540438 WRNQ14191 1432 aaPredicted RBP eCLIP26.15■■□□□ 1.78
USP28-208ENST00000540438 ATAD2BQ9ULI0 1458 aa26.13■■□□□ 1.77
USP28-208ENST00000540438 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
USP28-208ENST00000540438 ZEB1P37275 1124 aaPredicted RBP26.01■■□□□ 1.75
USP28-208ENST00000540438 HNRNPUL2Q1KMD3 747 aaKnown RBP26.01■■□□□ 1.75
USP28-208ENST00000540438 SYNJ1O43426 1573 aa25.98■■□□□ 1.75
USP28-208ENST00000540438 TNIKQ9UKE5 1360 aa25.93■■□□□ 1.74
USP28-208ENST00000540438 GOLGA3Q08378 1498 aa25.82■■□□□ 1.72
USP28-208ENST00000540438 RAPGEF2Q9Y4G8 1499 aa25.8■■□□□ 1.72
USP28-208ENST00000540438 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
USP28-208ENST00000540438 APLP2Q06481 763 aa25.74■■□□□ 1.71
USP28-208ENST00000540438 CLIP1P30622 1438 aa25.73■■□□□ 1.71
USP28-208ENST00000540438 EEA1Q15075 1411 aa25.7■■□□□ 1.7
USP28-208ENST00000540438 CEP164Q9UPV0 1460 aa25.65■■□□□ 1.7
USP28-208ENST00000540438 ITGAEP38570 1179 aa25.59■■□□□ 1.69
USP28-208ENST00000540438 KANK4Q5T7N3 995 aaPredicted RBP25.52■■□□□ 1.68
USP28-208ENST00000540438 P3H3Q8IVL6 736 aa25.52■■□□□ 1.68
USP28-208ENST00000540438 ATP1B4Q9UN42 357 aaPredicted RBP25.5■■□□□ 1.67
USP28-208ENST00000540438 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
USP28-208ENST00000540438 DIEXFQ68CQ4 756 aaKnown RBP25.47■■□□□ 1.67
USP28-208ENST00000540438 CUX1P39880 1505 aa25.46■■□□□ 1.67
USP28-208ENST00000540438 DNAJC5BQ9UF47 199 aa25.44■■□□□ 1.66
USP28-208ENST00000540438 TOP2BQ02880 1626 aa25.42■■□□□ 1.66
USP28-208ENST00000540438 VPS8Q8N3P4 1428 aa25.41■■□□□ 1.66
USP28-208ENST00000540438 KIF21BO75037 1637 aa25.37■■□□□ 1.65
USP28-208ENST00000540438 YTHDC1Q96MU7 727 aaKnown RBP25.36■■□□□ 1.65
USP28-208ENST00000540438 SCAF1Q9H7N4 1312 aaKnown RBP25.34■■□□□ 1.65
USP28-208ENST00000540438 KIF27Q86VH2 1401 aa25.3■■□□□ 1.64
USP28-208ENST00000540438 CFTRP13569 1480 aa25.3■■□□□ 1.64
USP28-208ENST00000540438 CUX2O14529 1486 aa25.29■■□□□ 1.64
USP28-208ENST00000540438 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
USP28-208ENST00000540438 ARAP1Q96P48 1450 aa25.25■■□□□ 1.63
USP28-208ENST00000540438 PRXQ9BXM0 1461 aa25.24■■□□□ 1.63
USP28-208ENST00000540438 NEUROD1Q13562 356 aa25.22■■□□□ 1.63
USP28-208ENST00000540438 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
USP28-208ENST00000540438 NESP48681 1621 aa25.21■■□□□ 1.63
USP28-208ENST00000540438 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
USP28-208ENST00000540438 ZNF316A6NFI3 1004 aaPredicted RBP25.18■■□□□ 1.62
USP28-208ENST00000540438 CC2D2AQ9P2K1 1620 aa25.16■■□□□ 1.62
USP28-208ENST00000540438 IGF1RP08069 1367 aa25.16■■□□□ 1.62
USP28-208ENST00000540438 RAD54L2Q9Y4B4 1467 aa25.12■■□□□ 1.61
USP28-208ENST00000540438 FGD5Q6ZNL6 1462 aa25.11■■□□□ 1.61
USP28-208ENST00000540438 CARMIL1Q5VZK9 1371 aa25.09■■□□□ 1.61
USP28-208ENST00000540438 MIER1Q8N108 512 aa25.07■■□□□ 1.6
USP28-208ENST00000540438 FAM50AQ14320 339 aaKnown RBP25.06■■□□□ 1.6
USP28-208ENST00000540438 ARHGAP35Q9NRY4 1499 aa25.06■■□□□ 1.6
USP28-208ENST00000540438 FANCD2Q9BXW9 1451 aa25.02■■□□□ 1.6
USP28-208ENST00000540438 ARID3CA6NKF2 412 aa25■■□□□ 1.59
USP28-208ENST00000540438 ACIN1Q9UKV3 1341 aaKnown RBP24.98■■□□□ 1.59
USP28-208ENST00000540438 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
USP28-208ENST00000540438 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
USP28-208ENST00000540438 GTF3C3Q9Y5Q9 886 aa24.95■■□□□ 1.58
USP28-208ENST00000540438 FHOD3Q2V2M9 1422 aa24.89■■□□□ 1.58
USP28-208ENST00000540438 DHX57Q6P158 1386 aaKnown RBP24.88■■□□□ 1.57
USP28-208ENST00000540438 CCNB3Q8WWL7 1395 aa24.85■■□□□ 1.57
USP28-208ENST00000540438 SIN3AQ96ST3 1273 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms