RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 NISCHQ9Y2I1 1504 aa21.75■■□□□ 1.07
CLIP1-213ENST00000540338 DCAF8L2P0C7V8 631 aa19.13■□□□□ 0.65
CLIP1-213ENST00000540338 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
CLIP1-213ENST00000540338 SUPT5HO00267 1087 aaKnown RBP18.67■□□□□ 0.58
CLIP1-213ENST00000540338 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
CLIP1-213ENST00000540338 ZCCHC6Q5VYS8 1495 aaKnown RBP18.25■□□□□ 0.51
CLIP1-213ENST00000540338 ABCC9O60706 1549 aa17.73■□□□□ 0.43
CLIP1-213ENST00000540338 DCAF1Q9Y4B6 1507 aa17.71■□□□□ 0.43
CLIP1-213ENST00000540338 CHIC1Q5VXU3 224 aa17.67■□□□□ 0.42
CLIP1-213ENST00000540338 SCRIBQ14160 1630 aa17.46■□□□□ 0.39
CLIP1-213ENST00000540338 TRIM41Q8WV44 630 aa17.43■□□□□ 0.38
CLIP1-213ENST00000540338 FAM9AQ8IZU1 332 aaPredicted RBP17.33■□□□□ 0.37
CLIP1-213ENST00000540338 NACADO15069 1562 aa17.32■□□□□ 0.36
CLIP1-213ENST00000540338 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
CLIP1-213ENST00000540338 EHMT2Q96KQ7 1210 aa17.28■□□□□ 0.36
CLIP1-213ENST00000540338 LOC105371045A0A1W2PR82 267 aa17.22■□□□□ 0.35
CLIP1-213ENST00000540338 PCGF6Q9BYE7 350 aa17.21■□□□□ 0.35
CLIP1-213ENST00000540338 RSF1Q96T23 1441 aaPredicted RBP17.2■□□□□ 0.34
CLIP1-213ENST00000540338 RB1CC1Q8TDY2 1594 aa17.16■□□□□ 0.34
CLIP1-213ENST00000540338 PABPN1Q86U42 306 aaKnown RBP eCLIP17.11■□□□□ 0.33
CLIP1-213ENST00000540338 CECR2Q9BXF3 1484 aa16.97■□□□□ 0.31
CLIP1-213ENST00000540338 TRIM26Q12899 539 aaPredicted RBP16.89■□□□□ 0.29
CLIP1-213ENST00000540338 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
CLIP1-213ENST00000540338 HRCP23327 699 aa16.84■□□□□ 0.29
CLIP1-213ENST00000540338 BAZ1AQ9NRL2 1556 aaPredicted RBP16.83■□□□□ 0.29
CLIP1-213ENST00000540338 UBTFP17480 764 aaKnown RBP16.79■□□□□ 0.28
CLIP1-213ENST00000540338 ZEB1P37275 1124 aaPredicted RBP16.67■□□□□ 0.26
CLIP1-213ENST00000540338 APLP2Q06481 763 aa16.67■□□□□ 0.26
CLIP1-213ENST00000540338 WIZO95785 1651 aa16.66■□□□□ 0.26
CLIP1-213ENST00000540338 TTBK1Q5TCY1 1321 aaPredicted RBP16.66■□□□□ 0.26
CLIP1-213ENST00000540338 PPARGC1BQ86YN6 1023 aaKnown RBP16.66■□□□□ 0.26
CLIP1-213ENST00000540338 RANGAP1P46060 587 aaPredicted RBP16.57■□□□□ 0.24
CLIP1-213ENST00000540338 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
CLIP1-213ENST00000540338 TOP2AP11388 1531 aaKnown RBP16.53■□□□□ 0.24
CLIP1-213ENST00000540338 CCDC88BA6NC98 1476 aa16.53■□□□□ 0.24
CLIP1-213ENST00000540338 SMARCA4P51532 1647 aa16.53■□□□□ 0.24
CLIP1-213ENST00000540338 CCER1Q8TC90 406 aaPredicted RBP16.48■□□□□ 0.23
CLIP1-213ENST00000540338 BAZ1BQ9UIG0 1483 aaKnown RBP16.46■□□□□ 0.23
CLIP1-213ENST00000540338 WRNQ14191 1432 aaPredicted RBP eCLIP16.39■□□□□ 0.21
CLIP1-213ENST00000540338 EEA1Q15075 1411 aa16.38■□□□□ 0.21
CLIP1-213ENST00000540338 ABCC8Q09428 1581 aa16.35■□□□□ 0.21
CLIP1-213ENST00000540338 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
CLIP1-213ENST00000540338 ATAD2BQ9ULI0 1458 aa16.32■□□□□ 0.2
CLIP1-213ENST00000540338 SOGA1O94964 1423 aa16.28■□□□□ 0.2
CLIP1-213ENST00000540338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.25■□□□□ 0.19
CLIP1-213ENST00000540338 TNIKQ9UKE5 1360 aa16.25■□□□□ 0.19
CLIP1-213ENST00000540338 BICRAQ9NZM4 1560 aa16.25■□□□□ 0.19
CLIP1-213ENST00000540338 CEP162Q5TB80 1403 aa16.24■□□□□ 0.19
CLIP1-213ENST00000540338 GOLGA3Q08378 1498 aa16.22■□□□□ 0.19
CLIP1-213ENST00000540338 UNC13AQ9UPW8 1703 aa16.21■□□□□ 0.19
CLIP1-213ENST00000540338 HNRNPUL2Q1KMD3 747 aaKnown RBP16.18■□□□□ 0.18
CLIP1-213ENST00000540338 ATP1B4Q9UN42 357 aaPredicted RBP16.17■□□□□ 0.18
CLIP1-213ENST00000540338 CEP164Q9UPV0 1460 aa16.15■□□□□ 0.18
CLIP1-213ENST00000540338 CLIP1P30622 1438 aa16.12■□□□□ 0.17
CLIP1-213ENST00000540338 RUSC2Q8N2Y8 1516 aa16.07■□□□□ 0.16
CLIP1-213ENST00000540338 PEG3Q9GZU2 1588 aa16.04■□□□□ 0.16
CLIP1-213ENST00000540338 NCAPD3P42695 1498 aa16.04■□□□□ 0.16
CLIP1-213ENST00000540338 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
CLIP1-213ENST00000540338 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
CLIP1-213ENST00000540338 ITGAEP38570 1179 aa15.97■□□□□ 0.15
CLIP1-213ENST00000540338 CADPSQ9ULU8 1353 aa15.92■□□□□ 0.14
CLIP1-213ENST00000540338 SYNJ1O43426 1573 aa15.91■□□□□ 0.14
CLIP1-213ENST00000540338 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
CLIP1-213ENST00000540338 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
CLIP1-213ENST00000540338 P3H3Q8IVL6 736 aa15.88■□□□□ 0.13
CLIP1-213ENST00000540338 VPS8Q8N3P4 1428 aa15.88■□□□□ 0.13
CLIP1-213ENST00000540338 CUX2O14529 1486 aa15.85■□□□□ 0.13
CLIP1-213ENST00000540338 CENPBP07199 599 aaPredicted RBP15.85■□□□□ 0.13
CLIP1-213ENST00000540338 DIEXFQ68CQ4 756 aaKnown RBP15.84■□□□□ 0.13
CLIP1-213ENST00000540338 CFTRP13569 1480 aa15.82■□□□□ 0.12
CLIP1-213ENST00000540338 FAM50AQ14320 339 aaKnown RBP15.81■□□□□ 0.12
CLIP1-213ENST00000540338 CARMIL1Q5VZK9 1371 aa15.8■□□□□ 0.12
CLIP1-213ENST00000540338 KIF21BO75037 1637 aa15.78■□□□□ 0.12
CLIP1-213ENST00000540338 TOP2BQ02880 1626 aa15.78■□□□□ 0.12
CLIP1-213ENST00000540338 ZNF316A6NFI3 1004 aaPredicted RBP15.75■□□□□ 0.11
CLIP1-213ENST00000540338 FANCD2Q9BXW9 1451 aa15.7■□□□□ 0.1
CLIP1-213ENST00000540338 CUX1P39880 1505 aa15.7■□□□□ 0.1
CLIP1-213ENST00000540338 IGF1RP08069 1367 aa15.66■□□□□ 0.1
CLIP1-213ENST00000540338 CC2D2AQ9P2K1 1620 aa15.66■□□□□ 0.1
CLIP1-213ENST00000540338 PRXQ9BXM0 1461 aa15.66■□□□□ 0.1
CLIP1-213ENST00000540338 KANK4Q5T7N3 995 aaPredicted RBP15.66■□□□□ 0.1
CLIP1-213ENST00000540338 YTHDC1Q96MU7 727 aaKnown RBP15.65■□□□□ 0.1
CLIP1-213ENST00000540338 ERICH3Q5RHP9 1530 aa15.65■□□□□ 0.1
CLIP1-213ENST00000540338 FGD5Q6ZNL6 1462 aa15.65■□□□□ 0.1
CLIP1-213ENST00000540338 PDS5BQ9NTI5 1447 aa15.65■□□□□ 0.1
CLIP1-213ENST00000540338 FHAD1B1AJZ9 1412 aa15.61■□□□□ 0.09
CLIP1-213ENST00000540338 BIVM-ERCC5R4GMW8 1640 aa15.59■□□□□ 0.09
CLIP1-213ENST00000540338 CCNB3Q8WWL7 1395 aa15.57■□□□□ 0.08
CLIP1-213ENST00000540338 TDRD9Q8NDG6 1382 aaKnown RBP15.57■□□□□ 0.08
CLIP1-213ENST00000540338 NEUROD1Q13562 356 aa15.56■□□□□ 0.08
CLIP1-213ENST00000540338 FBLN2P98095 1184 aa15.55■□□□□ 0.08
CLIP1-213ENST00000540338 MTUS2Q5JR59 1369 aa15.55■□□□□ 0.08
CLIP1-213ENST00000540338 RAD54L2Q9Y4B4 1467 aa15.53■□□□□ 0.08
CLIP1-213ENST00000540338 CLSPNQ9HAW4 1339 aa15.53■□□□□ 0.08
CLIP1-213ENST00000540338 ARAP1Q96P48 1450 aa15.5■□□□□ 0.07
CLIP1-213ENST00000540338 NESP48681 1621 aa15.5■□□□□ 0.07
CLIP1-213ENST00000540338 ARID3CA6NKF2 412 aa15.5■□□□□ 0.07
CLIP1-213ENST00000540338 ARHGAP35Q9NRY4 1499 aa15.47■□□□□ 0.07
CLIP1-213ENST00000540338 TRIM52Q96A61 297 aa15.46■□□□□ 0.07
CLIP1-213ENST00000540338 TOPBP1Q92547 1522 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms