RNA–Protein interactions for RNA: ENST00000539599.5

UBE3B-210, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best)

Gene UBE3B, Length 2,763 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-210ENST00000539599 NISCHQ9Y2I1 1504 aa29.13■■■□□ 2.25
UBE3B-210ENST00000539599 SHROOM4Q9ULL8 1493 aa25.32■■□□□ 1.64
UBE3B-210ENST00000539599 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
UBE3B-210ENST00000539599 DCAF8L2P0C7V8 631 aa24.64■■□□□ 1.53
UBE3B-210ENST00000539599 ZCCHC6Q5VYS8 1495 aaKnown RBP24.62■■□□□ 1.53
UBE3B-210ENST00000539599 CCDC180Q9P1Z9 1646 aa24.55■■□□□ 1.52
UBE3B-210ENST00000539599 MYO15BQ96JP2 1530 aa23.91■■□□□ 1.42
UBE3B-210ENST00000539599 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
UBE3B-210ENST00000539599 DCAF1Q9Y4B6 1507 aa23.65■■□□□ 1.38
UBE3B-210ENST00000539599 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
UBE3B-210ENST00000539599 LOC105371045A0A1W2PR82 267 aa23.39■■□□□ 1.34
UBE3B-210ENST00000539599 PCGF6Q9BYE7 350 aa23.29■■□□□ 1.32
UBE3B-210ENST00000539599 ABCC9O60706 1549 aa23.22■■□□□ 1.31
UBE3B-210ENST00000539599 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.29
UBE3B-210ENST00000539599 HRCP23327 699 aa23.08■■□□□ 1.29
UBE3B-210ENST00000539599 EHMT2Q96KQ7 1210 aa22.99■■□□□ 1.27
UBE3B-210ENST00000539599 RB1CC1Q8TDY2 1594 aa22.98■■□□□ 1.27
UBE3B-210ENST00000539599 FAM9AQ8IZU1 332 aaPredicted RBP22.97■■□□□ 1.27
UBE3B-210ENST00000539599 PPARGC1BQ86YN6 1023 aaKnown RBP22.95■■□□□ 1.27
UBE3B-210ENST00000539599 CECR2Q9BXF3 1484 aa22.94■■□□□ 1.26
UBE3B-210ENST00000539599 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
UBE3B-210ENST00000539599 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
UBE3B-210ENST00000539599 NACADO15069 1562 aa22.76■■□□□ 1.23
UBE3B-210ENST00000539599 WIZO95785 1651 aa22.68■■□□□ 1.22
UBE3B-210ENST00000539599 TRIM26Q12899 539 aaPredicted RBP22.59■■□□□ 1.21
UBE3B-210ENST00000539599 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
UBE3B-210ENST00000539599 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
UBE3B-210ENST00000539599 ABCC8Q09428 1581 aa22.26■■□□□ 1.15
UBE3B-210ENST00000539599 UNC13AQ9UPW8 1703 aa22.26■■□□□ 1.15
UBE3B-210ENST00000539599 EIF4G1Q04637 1599 aaKnown RBP22.21■■□□□ 1.15
UBE3B-210ENST00000539599 SMARCA4P51532 1647 aa22.2■■□□□ 1.14
UBE3B-210ENST00000539599 TTBK1Q5TCY1 1321 aaPredicted RBP22.19■■□□□ 1.14
UBE3B-210ENST00000539599 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
UBE3B-210ENST00000539599 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.14
UBE3B-210ENST00000539599 SMARCA2P51531 1590 aa22.1■■□□□ 1.13
UBE3B-210ENST00000539599 SOGA1O94964 1423 aa22.04■■□□□ 1.12
UBE3B-210ENST00000539599 RUSC2Q8N2Y8 1516 aa21.99■■□□□ 1.11
UBE3B-210ENST00000539599 BICRAQ9NZM4 1560 aa21.98■■□□□ 1.11
UBE3B-210ENST00000539599 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.97■■□□□ 1.11
UBE3B-210ENST00000539599 ZEB1P37275 1124 aaPredicted RBP21.89■■□□□ 1.1
UBE3B-210ENST00000539599 UBTFP17480 764 aaKnown RBP21.85■■□□□ 1.09
UBE3B-210ENST00000539599 CEP162Q5TB80 1403 aa21.83■■□□□ 1.09
UBE3B-210ENST00000539599 CSRNP3Q8WYN3 585 aa21.8■■□□□ 1.08
UBE3B-210ENST00000539599 CCER1Q8TC90 406 aaPredicted RBP21.77■■□□□ 1.08
UBE3B-210ENST00000539599 RANGAP1P46060 587 aaPredicted RBP21.72■■□□□ 1.07
UBE3B-210ENST00000539599 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
UBE3B-210ENST00000539599 SYNJ1O43426 1573 aa21.67■■□□□ 1.06
UBE3B-210ENST00000539599 TNIKQ9UKE5 1360 aa21.67■■□□□ 1.06
UBE3B-210ENST00000539599 ATAD2BQ9ULI0 1458 aa21.66■■□□□ 1.06
UBE3B-210ENST00000539599 BAZ1BQ9UIG0 1483 aaKnown RBP21.61■■□□□ 1.05
UBE3B-210ENST00000539599 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
UBE3B-210ENST00000539599 GOLGA3Q08378 1498 aa21.57■■□□□ 1.04
UBE3B-210ENST00000539599 EEA1Q15075 1411 aa21.54■■□□□ 1.04
UBE3B-210ENST00000539599 HNRNPUL2Q1KMD3 747 aaKnown RBP21.47■■□□□ 1.03
UBE3B-210ENST00000539599 RAPGEF2Q9Y4G8 1499 aa21.45■■□□□ 1.03
UBE3B-210ENST00000539599 CEP164Q9UPV0 1460 aa21.42■■□□□ 1.02
UBE3B-210ENST00000539599 CLIP1P30622 1438 aa21.41■■□□□ 1.02
UBE3B-210ENST00000539599 SCAF1Q9H7N4 1312 aaKnown RBP21.4■■□□□ 1.02
UBE3B-210ENST00000539599 KIF21BO75037 1637 aa21.33■■□□□ 1.01
UBE3B-210ENST00000539599 DIEXFQ68CQ4 756 aaKnown RBP21.3■■□□□ 1
UBE3B-210ENST00000539599 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
UBE3B-210ENST00000539599 VPS8Q8N3P4 1428 aa21.25■□□□□ 0.99
UBE3B-210ENST00000539599 APLP2Q06481 763 aa21.22■□□□□ 0.99
UBE3B-210ENST00000539599 NEUROD1Q13562 356 aa21.19■□□□□ 0.98
UBE3B-210ENST00000539599 CUX1P39880 1505 aa21.18■□□□□ 0.98
UBE3B-210ENST00000539599 BIVM-ERCC5R4GMW8 1640 aa21.14■□□□□ 0.97
UBE3B-210ENST00000539599 NCAPD3P42695 1498 aa21.13■□□□□ 0.97
UBE3B-210ENST00000539599 KANK4Q5T7N3 995 aaPredicted RBP21.13■□□□□ 0.97
UBE3B-210ENST00000539599 PRXQ9BXM0 1461 aa21.08■□□□□ 0.97
UBE3B-210ENST00000539599 ZNF316A6NFI3 1004 aaPredicted RBP21.08■□□□□ 0.96
UBE3B-210ENST00000539599 ARAP1Q96P48 1450 aa21.07■□□□□ 0.96
UBE3B-210ENST00000539599 HMGXB3Q12766 1538 aa21.07■□□□□ 0.96
UBE3B-210ENST00000539599 ACIN1Q9UKV3 1341 aaKnown RBP21.07■□□□□ 0.96
UBE3B-210ENST00000539599 YTHDC1Q96MU7 727 aaKnown RBP21.04■□□□□ 0.96
UBE3B-210ENST00000539599 CFTRP13569 1480 aa21.01■□□□□ 0.95
UBE3B-210ENST00000539599 KIF27Q86VH2 1401 aa20.99■□□□□ 0.95
UBE3B-210ENST00000539599 ITGAEP38570 1179 aa20.98■□□□□ 0.95
UBE3B-210ENST00000539599 ERICH3Q5RHP9 1530 aa20.97■□□□□ 0.95
UBE3B-210ENST00000539599 GTF3C3Q9Y5Q9 886 aa20.94■□□□□ 0.94
UBE3B-210ENST00000539599 MIER1Q8N108 512 aa20.93■□□□□ 0.94
UBE3B-210ENST00000539599 CUX2O14529 1486 aa20.92■□□□□ 0.94
UBE3B-210ENST00000539599 ARHGAP35Q9NRY4 1499 aa20.89■□□□□ 0.94
UBE3B-210ENST00000539599 P3H3Q8IVL6 736 aa20.87■□□□□ 0.93
UBE3B-210ENST00000539599 IGF1RP08069 1367 aa20.85■□□□□ 0.93
UBE3B-210ENST00000539599 CENPBP07199 599 aaPredicted RBP20.84■□□□□ 0.93
UBE3B-210ENST00000539599 DHX57Q6P158 1386 aaKnown RBP20.83■□□□□ 0.93
UBE3B-210ENST00000539599 CADPSQ9ULU8 1353 aa20.83■□□□□ 0.92
UBE3B-210ENST00000539599 FGD5Q6ZNL6 1462 aa20.81■□□□□ 0.92
UBE3B-210ENST00000539599 ATP1B4Q9UN42 357 aaPredicted RBP20.79■□□□□ 0.92
UBE3B-210ENST00000539599 CC2D2AQ9P2K1 1620 aa20.76■□□□□ 0.91
UBE3B-210ENST00000539599 CARMIL1Q5VZK9 1371 aa20.76■□□□□ 0.91
UBE3B-210ENST00000539599 RAD54L2Q9Y4B4 1467 aa20.72■□□□□ 0.91
UBE3B-210ENST00000539599 NESP48681 1621 aa20.72■□□□□ 0.91
UBE3B-210ENST00000539599 CCNB3Q8WWL7 1395 aa20.71■□□□□ 0.91
UBE3B-210ENST00000539599 RRBP1Q9P2E9 1410 aaKnown RBP20.71■□□□□ 0.91
UBE3B-210ENST00000539599 PRDM2Q13029 1718 aa20.7■□□□□ 0.9
UBE3B-210ENST00000539599 FANCD2Q9BXW9 1451 aa20.67■□□□□ 0.9
UBE3B-210ENST00000539599 DNAJC5BQ9UF47 199 aa20.65■□□□□ 0.9
UBE3B-210ENST00000539599 FAM50AQ14320 339 aaKnown RBP20.63■□□□□ 0.89
UBE3B-210ENST00000539599 PHLDB1Q86UU1 1377 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms