RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 AEBP2Q6ZN18 517 aaPredicted RBP26.07■■□□□ 1.76
CLIP1-210ENST00000538120 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.67
CLIP1-210ENST00000538120 NISCHQ9Y2I1 1504 aa23.56■■□□□ 1.36
CLIP1-210ENST00000538120 PHF23Q9BUL5 403 aaPredicted RBP22.47■■□□□ 1.19
CLIP1-210ENST00000538120 SENP3Q9H4L4 574 aaPredicted RBP21.99■■□□□ 1.11
CLIP1-210ENST00000538120 PLPPR3Q6T4P5 718 aa20.66■□□□□ 0.9
CLIP1-210ENST00000538120 FOXD1Q16676 465 aa20.47■□□□□ 0.87
CLIP1-210ENST00000538120 CCDC180Q9P1Z9 1646 aa20.31■□□□□ 0.84
CLIP1-210ENST00000538120 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
CLIP1-210ENST00000538120 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
CLIP1-210ENST00000538120 ADRA2BP18089 450 aa19.76■□□□□ 0.75
CLIP1-210ENST00000538120 SHROOM4Q9ULL8 1493 aa19.52■□□□□ 0.71
CLIP1-210ENST00000538120 DCAF1Q9Y4B6 1507 aa19.44■□□□□ 0.7
CLIP1-210ENST00000538120 DCAF8L2P0C7V8 631 aa19.42■□□□□ 0.7
CLIP1-210ENST00000538120 PIAS4Q8N2W9 510 aaPredicted RBP19.29■□□□□ 0.68
CLIP1-210ENST00000538120 MYO15BQ96JP2 1530 aa19.08■□□□□ 0.64
CLIP1-210ENST00000538120 ABCC9O60706 1549 aa19.07■□□□□ 0.64
CLIP1-210ENST00000538120 SUPT5HO00267 1087 aaKnown RBP18.92■□□□□ 0.62
CLIP1-210ENST00000538120 NACADO15069 1562 aa18.88■□□□□ 0.61
CLIP1-210ENST00000538120 SCRIBQ14160 1630 aa18.82■□□□□ 0.6
CLIP1-210ENST00000538120 MSH5O43196 834 aa18.75■□□□□ 0.59
CLIP1-210ENST00000538120 RB1CC1Q8TDY2 1594 aa18.64■□□□□ 0.57
CLIP1-210ENST00000538120 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
CLIP1-210ENST00000538120 CECR2Q9BXF3 1484 aa18.36■□□□□ 0.53
CLIP1-210ENST00000538120 UNC13AQ9UPW8 1703 aa18.31■□□□□ 0.52
CLIP1-210ENST00000538120 MROH2BQ7Z745 1585 aa18.26■□□□□ 0.51
CLIP1-210ENST00000538120 PPP4R3CPQ6ZMV5 832 aa18.24■□□□□ 0.51
CLIP1-210ENST00000538120 BICRAQ9NZM4 1560 aa18.16■□□□□ 0.5
CLIP1-210ENST00000538120 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
CLIP1-210ENST00000538120 WIZO95785 1651 aa18.1■□□□□ 0.49
CLIP1-210ENST00000538120 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
CLIP1-210ENST00000538120 SMARCA4P51532 1647 aa18.03■□□□□ 0.48
CLIP1-210ENST00000538120 SLC24A1O60721 1099 aa18■□□□□ 0.47
CLIP1-210ENST00000538120 KCNA4P22459 653 aa17.98■□□□□ 0.47
CLIP1-210ENST00000538120 SCAF1Q9H7N4 1312 aaKnown RBP17.92■□□□□ 0.46
CLIP1-210ENST00000538120 MAPK8IP2Q13387 824 aaPredicted RBP17.92■□□□□ 0.46
CLIP1-210ENST00000538120 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
CLIP1-210ENST00000538120 PEG3Q9GZU2 1588 aa17.79■□□□□ 0.44
CLIP1-210ENST00000538120 CCDC88BA6NC98 1476 aa17.76■□□□□ 0.43
CLIP1-210ENST00000538120 SMARCA2P51531 1590 aa17.75■□□□□ 0.43
CLIP1-210ENST00000538120 EIF4G1Q04637 1599 aaKnown RBP17.74■□□□□ 0.43
CLIP1-210ENST00000538120 TRIM41Q8WV44 630 aa17.72■□□□□ 0.43
CLIP1-210ENST00000538120 ATAD2BQ9ULI0 1458 aa17.7■□□□□ 0.42
CLIP1-210ENST00000538120 NCBP3Q53F19 620 aaKnown RBP17.69■□□□□ 0.42
CLIP1-210ENST00000538120 CNKSR2Q8WXI2 1034 aa17.69■□□□□ 0.42
CLIP1-210ENST00000538120 LOC105371045A0A1W2PR82 267 aa17.63■□□□□ 0.41
CLIP1-210ENST00000538120 DMRT2Q9Y5R5 561 aa17.59■□□□□ 0.41
CLIP1-210ENST00000538120 BAZ1BQ9UIG0 1483 aaKnown RBP17.58■□□□□ 0.4
CLIP1-210ENST00000538120 NPM3O75607 178 aaKnown RBP17.57■□□□□ 0.4
CLIP1-210ENST00000538120 ABCC8Q09428 1581 aa17.49■□□□□ 0.39
CLIP1-210ENST00000538120 NCAPD3P42695 1498 aa17.47■□□□□ 0.39
CLIP1-210ENST00000538120 FAM9AQ8IZU1 332 aaPredicted RBP17.47■□□□□ 0.39
CLIP1-210ENST00000538120 HMGXB3Q12766 1538 aa17.43■□□□□ 0.38
CLIP1-210ENST00000538120 HRCP23327 699 aa17.37■□□□□ 0.37
CLIP1-210ENST00000538120 RNF216Q9NWF9 866 aaPredicted RBP17.33■□□□□ 0.36
CLIP1-210ENST00000538120 WRNQ14191 1432 aaPredicted RBP eCLIP17.31■□□□□ 0.36
CLIP1-210ENST00000538120 HOXD11P31277 338 aaPredicted RBP17.27■□□□□ 0.35
CLIP1-210ENST00000538120 PCGF6Q9BYE7 350 aa17.26■□□□□ 0.35
CLIP1-210ENST00000538120 SOGA1O94964 1423 aa17.26■□□□□ 0.35
CLIP1-210ENST00000538120 SYNJ1O43426 1573 aa17.24■□□□□ 0.35
CLIP1-210ENST00000538120 EHMT2Q96KQ7 1210 aa17.24■□□□□ 0.35
CLIP1-210ENST00000538120 CC2D2AQ9P2K1 1620 aa17.22■□□□□ 0.35
CLIP1-210ENST00000538120 RUSC2Q8N2Y8 1516 aa17.19■□□□□ 0.34
CLIP1-210ENST00000538120 CFTRP13569 1480 aa17.18■□□□□ 0.34
CLIP1-210ENST00000538120 EEA1Q15075 1411 aa17.16■□□□□ 0.34
CLIP1-210ENST00000538120 CSRNP3Q8WYN3 585 aa17.12■□□□□ 0.33
CLIP1-210ENST00000538120 PPARGC1BQ86YN6 1023 aaKnown RBP17.12■□□□□ 0.33
CLIP1-210ENST00000538120 TOP2BQ02880 1626 aa17.11■□□□□ 0.33
CLIP1-210ENST00000538120 BIVM-ERCC5R4GMW8 1640 aa17.07■□□□□ 0.32
CLIP1-210ENST00000538120 SLC4A1APQ9BWU0 796 aaKnown RBP17.06■□□□□ 0.32
CLIP1-210ENST00000538120 CADPSQ9ULU8 1353 aa17.06■□□□□ 0.32
CLIP1-210ENST00000538120 CUX1P39880 1505 aa17.04■□□□□ 0.32
CLIP1-210ENST00000538120 POTEDQ86YR6 584 aa17.02■□□□□ 0.31
CLIP1-210ENST00000538120 DNAJC5BQ9UF47 199 aa17.02■□□□□ 0.31
CLIP1-210ENST00000538120 TNIKQ9UKE5 1360 aa17.01■□□□□ 0.31
CLIP1-210ENST00000538120 PRDM2Q13029 1718 aa16.99■□□□□ 0.31
CLIP1-210ENST00000538120 TRIM26Q12899 539 aaPredicted RBP16.97■□□□□ 0.31
CLIP1-210ENST00000538120 GOLGA3Q08378 1498 aa16.97■□□□□ 0.31
CLIP1-210ENST00000538120 CEP162Q5TB80 1403 aa16.94■□□□□ 0.3
CLIP1-210ENST00000538120 KIF21BO75037 1637 aa16.94■□□□□ 0.3
CLIP1-210ENST00000538120 CEP164Q9UPV0 1460 aa16.93■□□□□ 0.3
CLIP1-210ENST00000538120 UBTFP17480 764 aaKnown RBP16.92■□□□□ 0.3
CLIP1-210ENST00000538120 FANCD2Q9BXW9 1451 aa16.86■□□□□ 0.29
CLIP1-210ENST00000538120 RAPGEF2Q9Y4G8 1499 aa16.86■□□□□ 0.29
CLIP1-210ENST00000538120 NESP48681 1621 aa16.86■□□□□ 0.29
CLIP1-210ENST00000538120 PRXQ9BXM0 1461 aa16.82■□□□□ 0.28
CLIP1-210ENST00000538120 KIF27Q86VH2 1401 aa16.82■□□□□ 0.28
CLIP1-210ENST00000538120 DCAF8L1A6NGE4 600 aa16.79■□□□□ 0.28
CLIP1-210ENST00000538120 FGD5Q6ZNL6 1462 aa16.79■□□□□ 0.28
CLIP1-210ENST00000538120 LAMC3Q9Y6N6 1575 aa16.78■□□□□ 0.28
CLIP1-210ENST00000538120 ERICH3Q5RHP9 1530 aa16.77■□□□□ 0.27
CLIP1-210ENST00000538120 CUX2O14529 1486 aa16.74■□□□□ 0.27
CLIP1-210ENST00000538120 CLIP1P30622 1438 aa16.74■□□□□ 0.27
CLIP1-210ENST00000538120 DNMBPQ6XZF7 1577 aa16.74■□□□□ 0.27
CLIP1-210ENST00000538120 TOPBP1Q92547 1522 aa16.72■□□□□ 0.27
CLIP1-210ENST00000538120 IGF1RP08069 1367 aa16.71■□□□□ 0.27
CLIP1-210ENST00000538120 POLA1P09884 1462 aaPredicted RBP16.67■□□□□ 0.26
CLIP1-210ENST00000538120 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
CLIP1-210ENST00000538120 RAD54L2Q9Y4B4 1467 aa16.66■□□□□ 0.26
CLIP1-210ENST00000538120 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms