RNA–Protein interactions for RNA: ENST00000537934.5

SEMA4D-221, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-221ENST00000537934 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
SEMA4D-221ENST00000537934 CCDC180Q9P1Z9 1646 aa20.62■□□□□ 0.89
SEMA4D-221ENST00000537934 ZCCHC6Q5VYS8 1495 aaKnown RBP19.92■□□□□ 0.78
SEMA4D-221ENST00000537934 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
SEMA4D-221ENST00000537934 ABCC9O60706 1549 aa19.67■□□□□ 0.74
SEMA4D-221ENST00000537934 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
SEMA4D-221ENST00000537934 SHROOM4Q9ULL8 1493 aa19.49■□□□□ 0.71
SEMA4D-221ENST00000537934 MYO15BQ96JP2 1530 aa19.28■□□□□ 0.68
SEMA4D-221ENST00000537934 HRCP23327 699 aa19.23■□□□□ 0.67
SEMA4D-221ENST00000537934 NACADO15069 1562 aa19.22■□□□□ 0.67
SEMA4D-221ENST00000537934 PELP1Q8IZL8 1130 aaKnown RBP19.16■□□□□ 0.66
SEMA4D-221ENST00000537934 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
SEMA4D-221ENST00000537934 RB1CC1Q8TDY2 1594 aa19.08■□□□□ 0.64
SEMA4D-221ENST00000537934 UNC13AQ9UPW8 1703 aa18.76■□□□□ 0.59
SEMA4D-221ENST00000537934 SUPT5HO00267 1087 aaKnown RBP18.72■□□□□ 0.59
SEMA4D-221ENST00000537934 PPARGC1BQ86YN6 1023 aaKnown RBP18.66■□□□□ 0.58
SEMA4D-221ENST00000537934 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.56
SEMA4D-221ENST00000537934 MYT1Q01538 1121 aa18.57■□□□□ 0.56
SEMA4D-221ENST00000537934 PCGF6Q9BYE7 350 aa18.57■□□□□ 0.56
SEMA4D-221ENST00000537934 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
SEMA4D-221ENST00000537934 CECR2Q9BXF3 1484 aa18.51■□□□□ 0.55
SEMA4D-221ENST00000537934 RSF1Q96T23 1441 aaPredicted RBP18.42■□□□□ 0.54
SEMA4D-221ENST00000537934 MROH2BQ7Z745 1585 aa18.37■□□□□ 0.53
SEMA4D-221ENST00000537934 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
SEMA4D-221ENST00000537934 BAZ1AQ9NRL2 1556 aaPredicted RBP18.29■□□□□ 0.52
SEMA4D-221ENST00000537934 SMARCA4P51532 1647 aa18.24■□□□□ 0.51
SEMA4D-221ENST00000537934 WIZO95785 1651 aa18.23■□□□□ 0.51
SEMA4D-221ENST00000537934 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
SEMA4D-221ENST00000537934 ZEB1P37275 1124 aaPredicted RBP18.03■□□□□ 0.48
SEMA4D-221ENST00000537934 TRIM26Q12899 539 aaPredicted RBP18■□□□□ 0.47
SEMA4D-221ENST00000537934 EIF4G1Q04637 1599 aaKnown RBP18■□□□□ 0.47
SEMA4D-221ENST00000537934 TOP2AP11388 1531 aaKnown RBP17.97■□□□□ 0.47
SEMA4D-221ENST00000537934 PEG3Q9GZU2 1588 aa17.97■□□□□ 0.47
SEMA4D-221ENST00000537934 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
SEMA4D-221ENST00000537934 SMARCA2P51531 1590 aa17.89■□□□□ 0.45
SEMA4D-221ENST00000537934 BAZ1BQ9UIG0 1483 aaKnown RBP17.85■□□□□ 0.45
SEMA4D-221ENST00000537934 CCDC88BA6NC98 1476 aa17.83■□□□□ 0.45
SEMA4D-221ENST00000537934 ACIN1Q9UKV3 1341 aaKnown RBP17.82■□□□□ 0.44
SEMA4D-221ENST00000537934 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
SEMA4D-221ENST00000537934 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
SEMA4D-221ENST00000537934 HMGXB3Q12766 1538 aa17.72■□□□□ 0.43
SEMA4D-221ENST00000537934 NEUROD1Q13562 356 aa17.7■□□□□ 0.42
SEMA4D-221ENST00000537934 LOC105371045A0A1W2PR82 267 aa17.69■□□□□ 0.42
SEMA4D-221ENST00000537934 GTF3C3Q9Y5Q9 886 aa17.63■□□□□ 0.41
SEMA4D-221ENST00000537934 CENPBP07199 599 aaPredicted RBP17.56■□□□□ 0.4
SEMA4D-221ENST00000537934 TTBK1Q5TCY1 1321 aaPredicted RBP17.54■□□□□ 0.4
SEMA4D-221ENST00000537934 TRIM41Q8WV44 630 aa17.54■□□□□ 0.4
SEMA4D-221ENST00000537934 ABCC8Q09428 1581 aa17.51■□□□□ 0.39
SEMA4D-221ENST00000537934 DNAJC5BQ9UF47 199 aa17.45■□□□□ 0.38
SEMA4D-221ENST00000537934 CFTRP13569 1480 aa17.38■□□□□ 0.37
SEMA4D-221ENST00000537934 CADPSQ9ULU8 1353 aa17.33■□□□□ 0.37
SEMA4D-221ENST00000537934 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.37
SEMA4D-221ENST00000537934 DIEXFQ68CQ4 756 aaKnown RBP17.31■□□□□ 0.36
SEMA4D-221ENST00000537934 FAM9AQ8IZU1 332 aaPredicted RBP17.31■□□□□ 0.36
SEMA4D-221ENST00000537934 SYNJ1O43426 1573 aa17.29■□□□□ 0.36
SEMA4D-221ENST00000537934 NESP48681 1621 aa17.27■□□□□ 0.36
SEMA4D-221ENST00000537934 PRDM2Q13029 1718 aa17.25■□□□□ 0.35
SEMA4D-221ENST00000537934 CUX1P39880 1505 aa17.17■□□□□ 0.34
SEMA4D-221ENST00000537934 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
SEMA4D-221ENST00000537934 FANCD2Q9BXW9 1451 aa17.16■□□□□ 0.34
SEMA4D-221ENST00000537934 SOGA1O94964 1423 aa17.16■□□□□ 0.34
SEMA4D-221ENST00000537934 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
SEMA4D-221ENST00000537934 BCL11AQ9H165 835 aa17.14■□□□□ 0.33
SEMA4D-221ENST00000537934 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
SEMA4D-221ENST00000537934 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
SEMA4D-221ENST00000537934 RUSC2Q8N2Y8 1516 aa17.12■□□□□ 0.33
SEMA4D-221ENST00000537934 CCER1Q8TC90 406 aaPredicted RBP17.1■□□□□ 0.33
SEMA4D-221ENST00000537934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
SEMA4D-221ENST00000537934 CEP164Q9UPV0 1460 aa17.04■□□□□ 0.32
SEMA4D-221ENST00000537934 PDS5BQ9NTI5 1447 aa17.03■□□□□ 0.32
SEMA4D-221ENST00000537934 KIF21AQ7Z4S6 1674 aa17.02■□□□□ 0.31
SEMA4D-221ENST00000537934 ANP32EQ9BTT0 268 aa17■□□□□ 0.31
SEMA4D-221ENST00000537934 EEA1Q15075 1411 aa16.99■□□□□ 0.31
SEMA4D-221ENST00000537934 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
SEMA4D-221ENST00000537934 FGD5Q6ZNL6 1462 aa16.98■□□□□ 0.31
SEMA4D-221ENST00000537934 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
SEMA4D-221ENST00000537934 DNMBPQ6XZF7 1577 aa16.97■□□□□ 0.31
SEMA4D-221ENST00000537934 URB2Q14146 1524 aaKnown RBP16.97■□□□□ 0.31
SEMA4D-221ENST00000537934 YTHDC1Q96MU7 727 aaKnown RBP16.94■□□□□ 0.3
SEMA4D-221ENST00000537934 ZNF316A6NFI3 1004 aaPredicted RBP16.93■□□□□ 0.3
SEMA4D-221ENST00000537934 PRKCSHP14314 528 aaPredicted RBP16.92■□□□□ 0.3
SEMA4D-221ENST00000537934 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
SEMA4D-221ENST00000537934 RAD54L2Q9Y4B4 1467 aa16.89■□□□□ 0.29
SEMA4D-221ENST00000537934 CUX2O14529 1486 aa16.87■□□□□ 0.29
SEMA4D-221ENST00000537934 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
SEMA4D-221ENST00000537934 CLSPNQ9HAW4 1339 aa16.86■□□□□ 0.29
SEMA4D-221ENST00000537934 MRC2Q9UBG0 1479 aa16.83■□□□□ 0.28
SEMA4D-221ENST00000537934 ERCC6Q03468 1493 aa16.83■□□□□ 0.28
SEMA4D-221ENST00000537934 GOLGA3Q08378 1498 aa16.81■□□□□ 0.28
SEMA4D-221ENST00000537934 KIF21BO75037 1637 aa16.81■□□□□ 0.28
SEMA4D-221ENST00000537934 UBTFP17480 764 aaKnown RBP16.81■□□□□ 0.28
SEMA4D-221ENST00000537934 MIER1Q8N108 512 aa16.81■□□□□ 0.28
SEMA4D-221ENST00000537934 RAPGEF2Q9Y4G8 1499 aa16.8■□□□□ 0.28
SEMA4D-221ENST00000537934 ABCA10Q8WWZ4 1543 aa16.79■□□□□ 0.28
SEMA4D-221ENST00000537934 TSHZ2Q9NRE2 1034 aa16.76■□□□□ 0.27
SEMA4D-221ENST00000537934 PRXQ9BXM0 1461 aa16.76■□□□□ 0.27
SEMA4D-221ENST00000537934 IGF1RP08069 1367 aa16.75■□□□□ 0.27
SEMA4D-221ENST00000537934 TNIKQ9UKE5 1360 aa16.75■□□□□ 0.27
SEMA4D-221ENST00000537934 SUPT16HQ9Y5B9 1047 aaKnown RBP16.74■□□□□ 0.27
SEMA4D-221ENST00000537934 WDR62O43379 1518 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms